In [1]:
# Parameters
data_name = "ES;F1216;A;GEO"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_100-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_100-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"
In [2]:
from matlas.reports import display_metadata
load data from labcluster
Using TensorFlow backend.
2019-08-30 19:02:26,076 [WARNING] git-lfs not installed
In [3]:
display_metadata(data_name, perf_file, reportfile, sheetname)
    Sample Information
    MetaData NameDescription
    Cell typemouse embryonic stem cells (F1216)
    Cell GroupES cells and embryonic tissues
    Experiment NameATAC
    Experiment GroupGEO
    Pipeline Output
    replicateNaïve overlap peaksIDR peaksTSS enrichment (< 8 is very poor <10 is low)Final number of unique mapping, dup-filtered, chrM filtered readsNumber of reads in called peak regionsFraction of reads in called peak regionsNumber of reads in promoter regionsFraction of reads in promoter regionsNumber of reads in enhancer regionsFraction of reads in enhancer regions
    rep1148115952729.187175743004101881920.134574269440.0981281332600.3715
    Modelling Metadata
    MetricValue
    auPRC0.6992
    Calibrated Recall at 50% FDR0.144
    Number of Positive Examples in Test Data86037
    Number of Negative Examples in Test Data7984814
    Imbalance Ratio in Test Data0.0107
    Test Chromosomeschr2, chr3, chr19
In [4]:
from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns
In [5]:
display_denovo_patterns(data_name, modisco_root=modisco_root)
TF-MoDISco is using the TensorFlow backend.
The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco
Click here for Denovo Patterns by TF-MoDISco: #21
Pattern NameTF Name(s)Modisco
metacluster_0/pattern_0 # seqlets: 2145 SequenceContrib ScoresHyp_Contrib Scores
Ctcf, Ctcfl
metacluster_0/pattern_1 # seqlets: 2144 SequenceContrib ScoresHyp_Contrib Scores
Sp1, Sp2, Sp3, Klf3, Sp4, Sp5, Wt1, Maz, Klf6, Zbtb17,

Klf1, Egr1, Klf15, Klf5, Zfp281, Klf4, Klf7, E2f4, Klf8, Klf12, Zfx,

Egr2, Rela, Mxi1, Fli1, E2f1, Sall4, Srebf2, Usf2
metacluster_0/pattern_2 # seqlets: 2004 SequenceContrib ScoresHyp_Contrib Scores
Myc, Max, Tfap2c
metacluster_0/pattern_3 # seqlets: 1093 SequenceContrib ScoresHyp_Contrib Scores
Zfp740, Bcl6, Zscan10
metacluster_0/pattern_4 # seqlets: 922 SequenceContrib ScoresHyp_Contrib Scores
Nfyb, Nfyc, Nfya, Foxi1, Pbx3
metacluster_0/pattern_5 # seqlets: 646 SequenceContrib ScoresHyp_Contrib Scores
Gabpa, Elf1, Elk1, Elk4, Elk3, Ets1, Erg, Fev, Elf5, Etv5,

Etv1, Etv4, Elf2, Elf4, Ehf, Etv6, XP_911724.4, Etv3, Spi1, Elf3, Etv2,

Spdef
metacluster_0/pattern_6 # seqlets: 622 SequenceContrib ScoresHyp_Contrib Scores
Pou5f1, Nanog, Sox2, Pou2f2, Lef1
metacluster_0/pattern_7 # seqlets: 582 SequenceContrib ScoresHyp_Contrib Scores
Sox4, Sox3, Sox6, Sox17, Sox12, Sry, Sox14, Sox7, Sox9, Sox5,

Sox11, Sox8, Sox18, Tcf7, Sox21, Sox30, Cux2, Sox15, Sox10, Tcf7l2, Tcf7l1
metacluster_0/pattern_8 # seqlets: 496 SequenceContrib ScoresHyp_Contrib Scores
Creb1, Atf1, Creb5, Atf7, Jdp2, Atf2, Crem, Tfe3, Srebf1, Tfec,

Rxrb, Mlx, Tfeb, Usf1, Bhlhe40, Mitf, Arntl, Nfil3, Xbp1, Tef, Atf3,

Jun, Clock, Mafb, Creb3l2, Dbp, Hlf
metacluster_0/pattern_9 # seqlets: 477 SequenceContrib ScoresHyp_Contrib Scores
Nrf1
metacluster_0/pattern_10 # seqlets: 384 SequenceContrib ScoresHyp_Contrib Scores
Tead4, Tead2, Tead1
metacluster_0/pattern_11 # seqlets: 373 SequenceContrib ScoresHyp_Contrib Scores
Fosl2, Fosb, Junb, Fosl1, Jund, Fos, Batf, Bach2, Nfe2l2, Bach1,

Nfe2, Mafk, Mafa, Mafg, Maff, Nr1d2, Maf, Nfatc1
metacluster_0/pattern_12 # seqlets: 335 SequenceContrib ScoresHyp_Contrib Scores
Rfx3, Rfx2, Rfx1, Rfx4, Rfx7, Rfx6
metacluster_0/pattern_13 # seqlets: 294 SequenceContrib ScoresHyp_Contrib Scores
Six2, Six4, Six1
metacluster_0/pattern_14 # seqlets: 255 SequenceContrib ScoresHyp_Contrib Scores
Taf1, Yy1, Zfp42
metacluster_0/pattern_15 # seqlets: 231 SequenceContrib ScoresHyp_Contrib Scores
Zfp143, Thap11, Tbx2
metacluster_0/pattern_16 # seqlets: 123 SequenceContrib ScoresHyp_Contrib Scores
Zbtb33
metacluster_0/pattern_17 # seqlets: 116 SequenceContrib ScoresHyp_Contrib Scores
Rest
metacluster_0/pattern_18 # seqlets: 81 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_19 # seqlets: 77 SequenceContrib ScoresHyp_Contrib Scores
Grhl2
metacluster_0/pattern_20 # seqlets: 49 SequenceContrib ScoresHyp_Contrib Scores
Click here for Motifs by TF-MoDISco: #157
TF NamePattern(s)
Ctcf
Pattern NameModiscoSignificance
metacluster_0/pattern_03.5598400000000003e-10
Ctcfl
Pattern NameModiscoSignificance
metacluster_0/pattern_02.45923e-11
metacluster_0/pattern_10.0105174
metacluster_0/pattern_20.0352774
Sp1
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00034280599999999997
metacluster_0/pattern_20.0110871
metacluster_0/pattern_30.028064699999999998
metacluster_0/pattern_90.0446543
metacluster_0/pattern_140.00014477
Sp2
Pattern NameModiscoSignificance
metacluster_0/pattern_11.3808499999999999e-13
metacluster_0/pattern_20.00217147
metacluster_0/pattern_30.00116881
metacluster_0/pattern_90.010059299999999998
metacluster_0/pattern_141.73266e-05
Sp3
Pattern NameModiscoSignificance
metacluster_0/pattern_11.3808499999999999e-13
metacluster_0/pattern_20.00353545
metacluster_0/pattern_30.000314461
metacluster_0/pattern_140.000423841
Klf3
Pattern NameModiscoSignificance
metacluster_0/pattern_12.8256e-10
metacluster_0/pattern_20.044632599999999995
metacluster_0/pattern_30.00299524
metacluster_0/pattern_140.036338
Sp4
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00176817
metacluster_0/pattern_30.0537172
Sp5
Pattern NameModiscoSignificance
metacluster_0/pattern_11.3253e-07
metacluster_0/pattern_30.00013711299999999999
Wt1
Pattern NameModiscoSignificance
metacluster_0/pattern_15.723980000000001e-07
metacluster_0/pattern_30.00117129
metacluster_0/pattern_140.0251019
Maz
Pattern NameModiscoSignificance
metacluster_0/pattern_13.5530300000000005e-06
metacluster_0/pattern_30.000864318
metacluster_0/pattern_140.029062
Klf6
Pattern NameModiscoSignificance
metacluster_0/pattern_15.7005799999999996e-06
metacluster_0/pattern_30.012040100000000001
Zbtb17
Pattern NameModiscoSignificance
metacluster_0/pattern_18.98213e-06
metacluster_0/pattern_20.044632599999999995
metacluster_0/pattern_34.06828e-07
metacluster_0/pattern_140.0154405
Klf1
Pattern NameModiscoSignificance
metacluster_0/pattern_10.048208600000000004
Egr1
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00540035
metacluster_0/pattern_20.0372048
metacluster_0/pattern_30.0535538
Klf15
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00012880000000000001
metacluster_0/pattern_30.00424073
Klf5
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00020025099999999998
metacluster_0/pattern_30.00367573
Zfp281
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00039950900000000004
metacluster_0/pattern_30.00299524
Klf4
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00169078
metacluster_0/pattern_30.00299524
Klf7
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00107803
metacluster_0/pattern_30.0569773
E2f4
Pattern NameModiscoSignificance
metacluster_0/pattern_10.0014564
metacluster_0/pattern_30.046734899999999996
Klf8
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00218895
metacluster_0/pattern_30.059622
Klf12
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00234315
Zfx
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00587542
metacluster_0/pattern_20.017853900000000002
metacluster_0/pattern_90.0269877
metacluster_0/pattern_140.00545325
Egr2
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00772106
metacluster_0/pattern_30.00367573
metacluster_0/pattern_140.039236
Rela
Pattern NameModiscoSignificance
metacluster_0/pattern_10.012332
metacluster_0/pattern_30.047544800000000005
Mxi1
Pattern NameModiscoSignificance
metacluster_0/pattern_10.012332
metacluster_0/pattern_20.00217147
metacluster_0/pattern_140.029062
Fli1
Pattern NameModiscoSignificance
metacluster_0/pattern_10.0175012
metacluster_0/pattern_50.00682374
E2f1
Pattern NameModiscoSignificance
metacluster_0/pattern_10.0175012
metacluster_0/pattern_30.041782599999999996
Sall4
Pattern NameModiscoSignificance
metacluster_0/pattern_10.030896499999999997
metacluster_0/pattern_30.0391673
Srebf2
Pattern NameModiscoSignificance
metacluster_0/pattern_10.039174
metacluster_0/pattern_30.0535538
metacluster_0/pattern_80.0229575
Usf2
Pattern NameModiscoSignificance
metacluster_0/pattern_10.058625300000000005
metacluster_0/pattern_20.00217147
metacluster_0/pattern_80.0551837
Myc
Pattern NameModiscoSignificance
metacluster_0/pattern_20.0185508
Max
Pattern NameModiscoSignificance
metacluster_0/pattern_20.044632599999999995
Tfap2c
Pattern NameModiscoSignificance
metacluster_0/pattern_20.0506718
Zfp740
Pattern NameModiscoSignificance
metacluster_0/pattern_30.012040100000000001
Bcl6
Pattern NameModiscoSignificance
metacluster_0/pattern_30.041782599999999996
Zscan10
Pattern NameModiscoSignificance
metacluster_0/pattern_30.0537047
Nfyb
Pattern NameModiscoSignificance
metacluster_0/pattern_41.13751e-12
Nfyc
Pattern NameModiscoSignificance
metacluster_0/pattern_42.2580799999999997e-09
Nfya
Pattern NameModiscoSignificance
metacluster_0/pattern_41.4500899999999998e-08
Foxi1
Pattern NameModiscoSignificance
metacluster_0/pattern_48.28403e-06
Pbx3
Pattern NameModiscoSignificance
metacluster_0/pattern_41.01196e-05
Gabpa
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00414435
Elf1
Pattern NameModiscoSignificance
metacluster_0/pattern_54.49065e-08
Elk1
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00404956
Elk4
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00599407
Elk3
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00404956
Ets1
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00720106
Erg
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00677743
Fev
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0032012
Elf5
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0114584
Etv5
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0032012
Etv1
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00414435
Etv4
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00599407
Elf2
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00936138
Elf4
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00507723
Ehf
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0071232
Etv6
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00550503
XP_911724.4
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00720106
Etv3
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00868099
Spi1
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0160847
Elf3
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0242261
Etv2
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0222773
Spdef
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0351514
Pou5f1
Pattern NameModiscoSignificance
metacluster_0/pattern_62.8354400000000002e-06
metacluster_0/pattern_70.024292400000000002
metacluster_0/pattern_120.050787
Nanog
Pattern NameModiscoSignificance
metacluster_0/pattern_63.01034e-09
metacluster_0/pattern_70.000166635
Sox2
Pattern NameModiscoSignificance
metacluster_0/pattern_62.8354400000000002e-06
metacluster_0/pattern_70.00903534
metacluster_0/pattern_120.033305400000000006
Pou2f2
Pattern NameModiscoSignificance
metacluster_0/pattern_60.0534078
Lef1
Pattern NameModiscoSignificance
metacluster_0/pattern_60.0406816
metacluster_0/pattern_70.00275747
Sox4
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00203124
Sox3
Pattern NameModiscoSignificance
metacluster_0/pattern_73.91971e-05
Sox6
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0232785
Sox17
Pattern NameModiscoSignificance
metacluster_0/pattern_70.000759563
Sox12
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00212072
Sry
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0572765
Sox14
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00789618
Sox7
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00821045
Sox9
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00821045
Sox5
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00852115
Sox11
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00854717
Sox8
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00935203
Sox18
Pattern NameModiscoSignificance
metacluster_0/pattern_70.013053700000000001
Tcf7
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0572765
Sox21
Pattern NameModiscoSignificance
metacluster_0/pattern_70.019726900000000002
Sox30
Pattern NameModiscoSignificance
metacluster_0/pattern_70.04008780000000001
Cux2
Pattern NameModiscoSignificance
metacluster_0/pattern_70.040179400000000004
Sox15
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0402483
Sox10
Pattern NameModiscoSignificance
metacluster_0/pattern_70.056690599999999994
Tcf7l2
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0594091
Tcf7l1
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0594091
Creb1
Pattern NameModiscoSignificance
metacluster_0/pattern_80.00166903
Atf1
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0229575
Creb5
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0008943930000000001
Atf7
Pattern NameModiscoSignificance
metacluster_0/pattern_80.00222004
Jdp2
Pattern NameModiscoSignificance
metacluster_0/pattern_80.00775978
metacluster_0/pattern_110.000861143
Atf2
Pattern NameModiscoSignificance
metacluster_0/pattern_80.00245673
Crem
Pattern NameModiscoSignificance
metacluster_0/pattern_80.00751819
Tfe3
Pattern NameModiscoSignificance
metacluster_0/pattern_80.045507900000000004
Srebf1
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0419957
Tfec
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0419957
Rxrb
Pattern NameModiscoSignificance
metacluster_0/pattern_80.00939067
Mlx
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0169207
Tfeb
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0275523
Usf1
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0275523
Bhlhe40
Pattern NameModiscoSignificance
metacluster_0/pattern_80.041774599999999995
Mitf
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0315233
Arntl
Pattern NameModiscoSignificance
metacluster_0/pattern_80.045507900000000004
Nfil3
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0229575
Xbp1
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0229575
Tef
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0229575
Atf3
Pattern NameModiscoSignificance
metacluster_0/pattern_80.047148
metacluster_0/pattern_111.0390799999999999e-05
Jun
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0275523
metacluster_0/pattern_111.0390799999999999e-05
Clock
Pattern NameModiscoSignificance
metacluster_0/pattern_80.028611200000000003
Mafb
Pattern NameModiscoSignificance
metacluster_0/pattern_80.035289999999999995
metacluster_0/pattern_110.018416099999999998
Creb3l2
Pattern NameModiscoSignificance
metacluster_0/pattern_80.047148
Dbp
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0554933
Hlf
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0554933
Nrf1
Pattern NameModiscoSignificance
metacluster_0/pattern_91.26584e-06
Tead4
Pattern NameModiscoSignificance
metacluster_0/pattern_100.000392339
Tead2
Pattern NameModiscoSignificance
metacluster_0/pattern_100.00130259
Tead1
Pattern NameModiscoSignificance
metacluster_0/pattern_100.00241992
Fosl2
Pattern NameModiscoSignificance
metacluster_0/pattern_111.52205e-05
Fosb
Pattern NameModiscoSignificance
metacluster_0/pattern_111.9415e-05
Junb
Pattern NameModiscoSignificance
metacluster_0/pattern_112.49467e-05
Fosl1
Pattern NameModiscoSignificance
metacluster_0/pattern_112.49467e-05
Jund
Pattern NameModiscoSignificance
metacluster_0/pattern_110.022572799999999997
Fos
Pattern NameModiscoSignificance
metacluster_0/pattern_115.2278400000000004e-05
Batf
Pattern NameModiscoSignificance
metacluster_0/pattern_110.00998947
Bach2
Pattern NameModiscoSignificance
metacluster_0/pattern_110.000672935
Nfe2l2
Pattern NameModiscoSignificance
metacluster_0/pattern_110.00425319
Bach1
Pattern NameModiscoSignificance
metacluster_0/pattern_110.00338771
Nfe2
Pattern NameModiscoSignificance
metacluster_0/pattern_110.00380204
Mafk
Pattern NameModiscoSignificance
metacluster_0/pattern_110.00998947
Mafa
Pattern NameModiscoSignificance
metacluster_0/pattern_110.00998947
Mafg
Pattern NameModiscoSignificance
metacluster_0/pattern_110.014095600000000002
Maff
Pattern NameModiscoSignificance
metacluster_0/pattern_110.0190632
Nr1d2
Pattern NameModiscoSignificance
metacluster_0/pattern_110.0379755
Maf
Pattern NameModiscoSignificance
metacluster_0/pattern_110.0379755
Nfatc1
Pattern NameModiscoSignificance
metacluster_0/pattern_110.0394626
Rfx3
Pattern NameModiscoSignificance
metacluster_0/pattern_120.000527924
Rfx2
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00748652
Rfx1
Pattern NameModiscoSignificance
metacluster_0/pattern_129.39822e-09
metacluster_0/pattern_140.0117312
Rfx4
Pattern NameModiscoSignificance
metacluster_0/pattern_121.06493e-05
Rfx7
Pattern NameModiscoSignificance
metacluster_0/pattern_120.0002108
Rfx6
Pattern NameModiscoSignificance
metacluster_0/pattern_120.000136207
Six2
Pattern NameModiscoSignificance
metacluster_0/pattern_132.26928e-06
Six4
Pattern NameModiscoSignificance
metacluster_0/pattern_138.54052e-06
Six1
Pattern NameModiscoSignificance
metacluster_0/pattern_130.00016411
Taf1
Pattern NameModiscoSignificance
metacluster_0/pattern_142.84938e-06
Yy1
Pattern NameModiscoSignificance
metacluster_0/pattern_141.73266e-05
Zfp42
Pattern NameModiscoSignificance
metacluster_0/pattern_140.0117793
Zfp143
Pattern NameModiscoSignificance
metacluster_0/pattern_154.513240000000001e-22
Thap11
Pattern NameModiscoSignificance
metacluster_0/pattern_151.09261e-20
Tbx2
Pattern NameModiscoSignificance
metacluster_0/pattern_155.67631e-14
Zbtb33
Pattern NameModiscoSignificance
metacluster_0/pattern_160.00021241400000000002
Rest
Pattern NameModiscoSignificance
metacluster_0/pattern_170.00411179
metacluster_0/pattern_181.87764e-18
Grhl2
Pattern NameModiscoSignificance
metacluster_0/pattern_190.000669125
In [6]:
display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)
Number of CISBP TFs obtained by TF-MoDISco and Homer
Shared TFs between TF-MoDISco and Homer: #78
TF NameModiscoHomer
Nfya
Pattern NameModiscoSignificance
metacluster_0/pattern_41.4500899999999998e-08
Pattern NameHomerSignificance
motif4.motif4.85173e-08
Creb1
Pattern NameModiscoSignificance
metacluster_0/pattern_80.00166903
Pattern NameHomerSignificance
motif12.motif0.011071899999999999
Etv1
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00414435
Pattern NameHomerSignificance
motif9.motif0.021432299999999998
Atf2
Pattern NameModiscoSignificance
metacluster_0/pattern_80.00245673
Pattern NameHomerSignificance
motif12.motif0.0009296039999999999
Gabpa
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00414435
Pattern NameHomerSignificance
motif9.motif0.0200197
Jdp2
Pattern NameModiscoSignificance
metacluster_0/pattern_80.00775978
metacluster_0/pattern_110.000861143
Pattern NameHomerSignificance
motif12.motif0.00632821
Pbx3
Pattern NameModiscoSignificance
metacluster_0/pattern_41.01196e-05
Pattern NameHomerSignificance
motif4.motif0.000160364
Etv3
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00868099
Pattern NameHomerSignificance
motif9.motif0.0379237
Tfec
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0419957
Pattern NameHomerSignificance
motif19.motif0.00173992
Tfe3
Pattern NameModiscoSignificance
metacluster_0/pattern_80.045507900000000004
Pattern NameHomerSignificance
motif19.motif0.00164564
Srebf2
Pattern NameModiscoSignificance
metacluster_0/pattern_10.039174
metacluster_0/pattern_30.0535538
metacluster_0/pattern_80.0229575
Pattern NameHomerSignificance
motif19.motif0.0174092
Zfp143
Pattern NameModiscoSignificance
metacluster_0/pattern_154.513240000000001e-22
Pattern NameHomerSignificance
motif3.motif5.3201e-08
Creb3l2
Pattern NameModiscoSignificance
metacluster_0/pattern_80.047148
Pattern NameHomerSignificance
motif19.motif0.014668700000000002
Zbtb17
Pattern NameModiscoSignificance
metacluster_0/pattern_18.98213e-06
metacluster_0/pattern_20.044632599999999995
metacluster_0/pattern_34.06828e-07
metacluster_0/pattern_140.0154405
Pattern NameHomerSignificance
motif2.motif0.0484759
Egr2
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00772106
metacluster_0/pattern_30.00367573
metacluster_0/pattern_140.039236
Pattern NameHomerSignificance
motif2.motif0.05670650000000001
Ctcf
Pattern NameModiscoSignificance
metacluster_0/pattern_03.5598400000000003e-10
Pattern NameHomerSignificance
motif1.motif5.54631e-07
Thap11
Pattern NameModiscoSignificance
metacluster_0/pattern_151.09261e-20
Pattern NameHomerSignificance
motif3.motif3.03915e-08
Pou5f1
Pattern NameModiscoSignificance
metacluster_0/pattern_62.8354400000000002e-06
metacluster_0/pattern_70.024292400000000002
metacluster_0/pattern_120.050787
Pattern NameHomerSignificance
motif7.motif5.26145e-08
Klf6
Pattern NameModiscoSignificance
metacluster_0/pattern_15.7005799999999996e-06
metacluster_0/pattern_30.012040100000000001
Pattern NameHomerSignificance
motif2.motif0.000937773
Klf5
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00020025099999999998
metacluster_0/pattern_30.00367573
Pattern NameHomerSignificance
motif2.motif0.0259488
Klf7
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00107803
metacluster_0/pattern_30.0569773
Pattern NameHomerSignificance
motif2.motif0.000619111
Elk4
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00599407
Pattern NameHomerSignificance
motif9.motif0.027423700000000002
Nfyb
Pattern NameModiscoSignificance
metacluster_0/pattern_41.13751e-12
Pattern NameHomerSignificance
motif4.motif4.85173e-08
Zbtb33
Pattern NameModiscoSignificance
metacluster_0/pattern_160.00021241400000000002
Pattern NameHomerSignificance
motif14.motif0.00156834
Erg
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00677743
Pattern NameHomerSignificance
motif9.motif0.031036599999999998
Elf2
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00936138
Pattern NameHomerSignificance
motif9.motif0.0220491
Etv5
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0032012
Pattern NameHomerSignificance
motif9.motif0.010929799999999998
Fev
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0032012
Pattern NameHomerSignificance
motif9.motif0.0148159
Usf1
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0275523
Pattern NameHomerSignificance
motif19.motif0.00416974
Klf12
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00234315
Pattern NameHomerSignificance
motif2.motif0.0144329
Elk3
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00404956
Pattern NameHomerSignificance
motif9.motif0.0198995
Creb5
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0008943930000000001
Pattern NameHomerSignificance
motif12.motif0.00109776
Atf7
Pattern NameModiscoSignificance
metacluster_0/pattern_80.00222004
Pattern NameHomerSignificance
motif12.motif0.000765645
Xbp1
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0229575
Pattern NameHomerSignificance
motif19.motif0.014121200000000002
Clock
Pattern NameModiscoSignificance
metacluster_0/pattern_80.028611200000000003
Pattern NameHomerSignificance
motif19.motif0.0305443
E2f1
Pattern NameModiscoSignificance
metacluster_0/pattern_10.0175012
metacluster_0/pattern_30.041782599999999996
Pattern NameHomerSignificance
motif2.motif0.0463466
Klf1
Pattern NameModiscoSignificance
metacluster_0/pattern_10.048208600000000004
Pattern NameHomerSignificance
motif2.motif0.0484759
Rest
Pattern NameModiscoSignificance
metacluster_0/pattern_170.00411179
metacluster_0/pattern_181.87764e-18
Pattern NameHomerSignificance
motif24.motif0.013324
Max
Pattern NameModiscoSignificance
metacluster_0/pattern_20.044632599999999995
Pattern NameHomerSignificance
motif19.motif0.052728199999999996
Ctcfl
Pattern NameModiscoSignificance
metacluster_0/pattern_02.45923e-11
metacluster_0/pattern_10.0105174
metacluster_0/pattern_20.0352774
Pattern NameHomerSignificance
motif1.motif8.506639999999999e-05
Zfx
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00587542
metacluster_0/pattern_20.017853900000000002
metacluster_0/pattern_90.0269877
metacluster_0/pattern_140.00545325
Pattern NameHomerSignificance
motif2.motif0.0259488
Tbx2
Pattern NameModiscoSignificance
metacluster_0/pattern_155.67631e-14
Pattern NameHomerSignificance
motif3.motif2.12825e-05
Atf1
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0229575
Pattern NameHomerSignificance
motif12.motif0.000787719
Bhlhe40
Pattern NameModiscoSignificance
metacluster_0/pattern_80.041774599999999995
Pattern NameHomerSignificance
motif19.motif0.0113352
Elf1
Pattern NameModiscoSignificance
metacluster_0/pattern_54.49065e-08
Pattern NameHomerSignificance
motif9.motif0.00931741
Elf5
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0114584
Pattern NameHomerSignificance
motif9.motif0.0198995
E2f4
Pattern NameModiscoSignificance
metacluster_0/pattern_10.0014564
metacluster_0/pattern_30.046734899999999996
Pattern NameHomerSignificance
motif2.motif0.0005947130000000001
Mlx
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0169207
Pattern NameHomerSignificance
motif19.motif0.00387469
Etv4
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00599407
Pattern NameHomerSignificance
motif9.motif0.0220491
Nrf1
Pattern NameModiscoSignificance
metacluster_0/pattern_91.26584e-06
Pattern NameHomerSignificance
motif11.motif0.000295421
Sp2
Pattern NameModiscoSignificance
metacluster_0/pattern_11.3808499999999999e-13
metacluster_0/pattern_20.00217147
metacluster_0/pattern_30.00116881
metacluster_0/pattern_90.010059299999999998
metacluster_0/pattern_141.73266e-05
Pattern NameHomerSignificance
motif2.motif8.623959999999999e-05
Klf3
Pattern NameModiscoSignificance
metacluster_0/pattern_12.8256e-10
metacluster_0/pattern_20.044632599999999995
metacluster_0/pattern_30.00299524
metacluster_0/pattern_140.036338
Pattern NameHomerSignificance
motif2.motif0.000169083
Foxi1
Pattern NameModiscoSignificance
metacluster_0/pattern_48.28403e-06
Pattern NameHomerSignificance
motif4.motif0.000155313
Srebf1
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0419957
Pattern NameHomerSignificance
motif19.motif0.014332399999999999
Sp4
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00176817
metacluster_0/pattern_30.0537172
Pattern NameHomerSignificance
motif2.motif0.0259488
Sox2
Pattern NameModiscoSignificance
metacluster_0/pattern_62.8354400000000002e-06
metacluster_0/pattern_70.00903534
metacluster_0/pattern_120.033305400000000006
Pattern NameHomerSignificance
motif7.motif9.77417e-06
Tfeb
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0275523
Pattern NameHomerSignificance
motif19.motif0.000144149
Ets1
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00720106
Pattern NameHomerSignificance
motif9.motif0.0379237
Myc
Pattern NameModiscoSignificance
metacluster_0/pattern_20.0185508
Pattern NameHomerSignificance
motif19.motif0.047089400000000003
Elf4
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00507723
Pattern NameHomerSignificance
motif9.motif0.027423700000000002
Elk1
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00404956
Pattern NameHomerSignificance
motif9.motif0.0198995
Atf3
Pattern NameModiscoSignificance
metacluster_0/pattern_80.047148
metacluster_0/pattern_111.0390799999999999e-05
Pattern NameHomerSignificance
motif12.motif0.041679
Egr1
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00540035
metacluster_0/pattern_20.0372048
metacluster_0/pattern_30.0535538
Pattern NameHomerSignificance
motif2.motif0.019259900000000003
Usf2
Pattern NameModiscoSignificance
metacluster_0/pattern_10.058625300000000005
metacluster_0/pattern_20.00217147
metacluster_0/pattern_80.0551837
Pattern NameHomerSignificance
motif19.motif0.00130582
Sp1
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00034280599999999997
metacluster_0/pattern_20.0110871
metacluster_0/pattern_30.028064699999999998
metacluster_0/pattern_90.0446543
metacluster_0/pattern_140.00014477
Pattern NameHomerSignificance
motif2.motif0.00686697
Pou2f2
Pattern NameModiscoSignificance
metacluster_0/pattern_60.0534078
Pattern NameHomerSignificance
motif7.motif0.0150155
Etv6
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00550503
Pattern NameHomerSignificance
motif9.motif0.031036599999999998
Fli1
Pattern NameModiscoSignificance
metacluster_0/pattern_10.0175012
metacluster_0/pattern_50.00682374
Pattern NameHomerSignificance
motif9.motif0.031036599999999998
Arntl
Pattern NameModiscoSignificance
metacluster_0/pattern_80.045507900000000004
Pattern NameHomerSignificance
motif19.motif0.00130582
Sp3
Pattern NameModiscoSignificance
metacluster_0/pattern_11.3808499999999999e-13
metacluster_0/pattern_20.00353545
metacluster_0/pattern_30.000314461
metacluster_0/pattern_140.000423841
Pattern NameHomerSignificance
motif2.motif8.623959999999999e-05
Nanog
Pattern NameModiscoSignificance
metacluster_0/pattern_63.01034e-09
metacluster_0/pattern_70.000166635
Pattern NameHomerSignificance
motif7.motif3.2758199999999997e-06
Ehf
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0071232
Pattern NameHomerSignificance
motif9.motif0.0379237
Klf4
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00169078
metacluster_0/pattern_30.00299524
Pattern NameHomerSignificance
motif2.motif0.0005947130000000001
Klf8
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00218895
metacluster_0/pattern_30.059622
Pattern NameHomerSignificance
motif2.motif0.00122736
Nfyc
Pattern NameModiscoSignificance
metacluster_0/pattern_42.2580799999999997e-09
Pattern NameHomerSignificance
motif4.motif1.83402e-07
Mitf
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0315233
Pattern NameHomerSignificance
motif19.motif0.00389806
Crem
Pattern NameModiscoSignificance
metacluster_0/pattern_80.00751819
Pattern NameHomerSignificance
motif12.motif0.0327346
XP_911724.4
Pattern NameModiscoSignificance
metacluster_0/pattern_50.00720106
Pattern NameHomerSignificance
motif9.motif0.0379237
Unique TF-MoDISco TFs: #79
TF NameModiscoHomer
Rfx7
Pattern NameModiscoSignificance
metacluster_0/pattern_120.0002108
Absent
Rela
Pattern NameModiscoSignificance
metacluster_0/pattern_10.012332
metacluster_0/pattern_30.047544800000000005
Absent
Rfx1
Pattern NameModiscoSignificance
metacluster_0/pattern_129.39822e-09
metacluster_0/pattern_140.0117312
Absent
Wt1
Pattern NameModiscoSignificance
metacluster_0/pattern_15.723980000000001e-07
metacluster_0/pattern_30.00117129
metacluster_0/pattern_140.0251019
Absent
Rfx3
Pattern NameModiscoSignificance
metacluster_0/pattern_120.000527924
Absent
Tead4
Pattern NameModiscoSignificance
metacluster_0/pattern_100.000392339
Absent
Etv2
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0222773
Absent
Maz
Pattern NameModiscoSignificance
metacluster_0/pattern_13.5530300000000005e-06
metacluster_0/pattern_30.000864318
metacluster_0/pattern_140.029062
Absent
Tead1
Pattern NameModiscoSignificance
metacluster_0/pattern_100.00241992
Absent
Sox5
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00852115
Absent
Tef
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0229575
Absent
Jund
Pattern NameModiscoSignificance
metacluster_0/pattern_110.022572799999999997
Absent
Nr1d2
Pattern NameModiscoSignificance
metacluster_0/pattern_110.0379755
Absent
Fosb
Pattern NameModiscoSignificance
metacluster_0/pattern_111.9415e-05
Absent
Klf15
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00012880000000000001
metacluster_0/pattern_30.00424073
Absent
Spi1
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0160847
Absent
Sox15
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0402483
Absent
Spdef
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0351514
Absent
Nfatc1
Pattern NameModiscoSignificance
metacluster_0/pattern_110.0394626
Absent
Sox21
Pattern NameModiscoSignificance
metacluster_0/pattern_70.019726900000000002
Absent
Sox4
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00203124
Absent
Nfe2
Pattern NameModiscoSignificance
metacluster_0/pattern_110.00380204
Absent
Sox11
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00854717
Absent
Yy1
Pattern NameModiscoSignificance
metacluster_0/pattern_141.73266e-05
Absent
Mafg
Pattern NameModiscoSignificance
metacluster_0/pattern_110.014095600000000002
Absent
Tfap2c
Pattern NameModiscoSignificance
metacluster_0/pattern_20.0506718
Absent
Taf1
Pattern NameModiscoSignificance
metacluster_0/pattern_142.84938e-06
Absent
Hlf
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0554933
Absent
Rxrb
Pattern NameModiscoSignificance
metacluster_0/pattern_80.00939067
Absent
Tcf7l1
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0594091
Absent
Sox17
Pattern NameModiscoSignificance
metacluster_0/pattern_70.000759563
Absent
Mxi1
Pattern NameModiscoSignificance
metacluster_0/pattern_10.012332
metacluster_0/pattern_20.00217147
metacluster_0/pattern_140.029062
Absent
Zfp281
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00039950900000000004
metacluster_0/pattern_30.00299524
Absent
Bach1
Pattern NameModiscoSignificance
metacluster_0/pattern_110.00338771
Absent
Sox30
Pattern NameModiscoSignificance
metacluster_0/pattern_70.04008780000000001
Absent
Six4
Pattern NameModiscoSignificance
metacluster_0/pattern_138.54052e-06
Absent
Sox3
Pattern NameModiscoSignificance
metacluster_0/pattern_73.91971e-05
Absent
Tead2
Pattern NameModiscoSignificance
metacluster_0/pattern_100.00130259
Absent
Maf
Pattern NameModiscoSignificance
metacluster_0/pattern_110.0379755
Absent
Sox18
Pattern NameModiscoSignificance
metacluster_0/pattern_70.013053700000000001
Absent
Rfx6
Pattern NameModiscoSignificance
metacluster_0/pattern_120.000136207
Absent
Fosl1
Pattern NameModiscoSignificance
metacluster_0/pattern_112.49467e-05
Absent
Tcf7
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0572765
Absent
Sry
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0572765
Absent
Zscan10
Pattern NameModiscoSignificance
metacluster_0/pattern_30.0537047
Absent
Maff
Pattern NameModiscoSignificance
metacluster_0/pattern_110.0190632
Absent
Sox9
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00821045
Absent
Sox7
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00821045
Absent
Mafk
Pattern NameModiscoSignificance
metacluster_0/pattern_110.00998947
Absent
Jun
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0275523
metacluster_0/pattern_111.0390799999999999e-05
Absent
Cux2
Pattern NameModiscoSignificance
metacluster_0/pattern_70.040179400000000004
Absent
Six1
Pattern NameModiscoSignificance
metacluster_0/pattern_130.00016411
Absent
Sox10
Pattern NameModiscoSignificance
metacluster_0/pattern_70.056690599999999994
Absent
Zfp42
Pattern NameModiscoSignificance
metacluster_0/pattern_140.0117793
Absent
Sox8
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00935203
Absent
Six2
Pattern NameModiscoSignificance
metacluster_0/pattern_132.26928e-06
Absent
Dbp
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0554933
Absent
Fosl2
Pattern NameModiscoSignificance
metacluster_0/pattern_111.52205e-05
Absent
Zfp740
Pattern NameModiscoSignificance
metacluster_0/pattern_30.012040100000000001
Absent
Mafa
Pattern NameModiscoSignificance
metacluster_0/pattern_110.00998947
Absent
Batf
Pattern NameModiscoSignificance
metacluster_0/pattern_110.00998947
Absent
Nfe2l2
Pattern NameModiscoSignificance
metacluster_0/pattern_110.00425319
Absent
Rfx2
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00748652
Absent
Sall4
Pattern NameModiscoSignificance
metacluster_0/pattern_10.030896499999999997
metacluster_0/pattern_30.0391673
Absent
Bach2
Pattern NameModiscoSignificance
metacluster_0/pattern_110.000672935
Absent
Sp5
Pattern NameModiscoSignificance
metacluster_0/pattern_11.3253e-07
metacluster_0/pattern_30.00013711299999999999
Absent
Sox6
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0232785
Absent
Elf3
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0242261
Absent
Grhl2
Pattern NameModiscoSignificance
metacluster_0/pattern_190.000669125
Absent
Tcf7l2
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0594091
Absent
Bcl6
Pattern NameModiscoSignificance
metacluster_0/pattern_30.041782599999999996
Absent
Mafb
Pattern NameModiscoSignificance
metacluster_0/pattern_80.035289999999999995
metacluster_0/pattern_110.018416099999999998
Absent
Fos
Pattern NameModiscoSignificance
metacluster_0/pattern_115.2278400000000004e-05
Absent
Rfx4
Pattern NameModiscoSignificance
metacluster_0/pattern_121.06493e-05
Absent
Lef1
Pattern NameModiscoSignificance
metacluster_0/pattern_60.0406816
metacluster_0/pattern_70.00275747
Absent
Sox12
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00212072
Absent
Sox14
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00789618
Absent
Nfil3
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0229575
Absent
Junb
Pattern NameModiscoSignificance
metacluster_0/pattern_112.49467e-05
Absent
Unique Homer TFs: #18
TF NameModiscoHomer
Npas2Absent
Pattern NameHomerSignificance
motif19.motif0.048338900000000004
ArntAbsent
Pattern NameHomerSignificance
motif19.motif0.0239713
Snai1Absent
Pattern NameHomerSignificance
motif1.motif0.043979199999999996
E2f7Absent
Pattern NameHomerSignificance
motif2.motif0.0463466
Hes2Absent
Pattern NameHomerSignificance
motif19.motif0.0458671
Hes1Absent
Pattern NameHomerSignificance
motif19.motif0.0458671
MlxipAbsent
Pattern NameHomerSignificance
motif19.motif0.0369668
Zic3Absent
Pattern NameHomerSignificance
motif1.motif0.043979199999999996
Pax2Absent
Pattern NameHomerSignificance
motif19.motif0.054432299999999996
Zbtb1Absent
Pattern NameHomerSignificance
motif2.motif0.0458251
Epas1Absent
Pattern NameHomerSignificance
motif19.motif0.053848
Hes5Absent
Pattern NameHomerSignificance
motif19.motif0.0458671
Zic2Absent
Pattern NameHomerSignificance
motif1.motif0.043979199999999996
Hey2Absent
Pattern NameHomerSignificance
motif19.motif0.014121200000000002
Arnt2Absent
Pattern NameHomerSignificance
motif19.motif0.047089400000000003
Tcfl5Absent
Pattern NameHomerSignificance
motif19.motif0.0177923
Bhlhe41Absent
Pattern NameHomerSignificance
motif19.motif0.00316771
MycnAbsent
Pattern NameHomerSignificance
motif19.motif0.0423537