Lib0-TAAGGCGM-GTGTAGAT_R2_001.trim.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	Lib0-TAAGGCGM-GTGTAGAT_R2_001.trim.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10870322
Sequences flagged as poor quality	0
Sequence length	19-76
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCCTAACCCTAACCCTAACCCTAACC	243372	2.238866521157331	No Hit
CCCTAACCCTAACCCTAACC	152156	1.3997377446592658	No Hit
CCCTAACCCTAACCCTAACCCTAACCCTAACC	90895	0.8361757820973472	No Hit
CCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACC	56641	0.5210609216543908	No Hit
CCCTAACCCTAACCCTACCC	37847	0.34816815914008803	No Hit
CCCTAACCCTAACCCTAACCCTAAC	22628	0.20816310685184855	No Hit
CCCTAACCCTAACCCTAACCCAAACC	19435	0.17878955195623458	No Hit
CCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACC	19294	0.17749244226619965	No Hit
CCCTAACCCTACCCCTAACC	15101	0.1389195278667918	No Hit
CCCTAACCCTAACCCTAACCCTTACC	14677	0.1350189994371832	No Hit
CCCTAACCCTAACCCTAAC	14111	0.12981216195803583	No Hit
ACCCTAACCCTAACCCTAACCCTAACC	11582	0.10654698177294103	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGATCA	490	0.0	64.081924	70
GCCGTAT	1270	0.0	50.624203	69
GTCGCCA	695	0.0	49.771633	68
TAGTCGC	390	0.0	48.941196	66
GGAAGTC	35	0.009522556	48.48526	64
CTGAAGT	35	5.6358613E-4	47.072235	43
TGATCAC	235	0.0	46.763927	66
GGTATCG	50	6.1328826E-4	46.271675	66
TGGTCAC	200	0.0	46.271675	66
AGTCGCC	420	0.0	46.152096	67
TCGCAGT	225	0.0	45.82711	69
AAGACGT	50	6.482515E-4	45.753983	65
CGCCGTA	2255	0.0	45.05042	70
AGTGATC	165	0.0	44.567257	64
TGGTCGC	2865	0.0	43.808697	66
GATGATC	155	0.0	43.793137	64
GGTCGCC	2710	0.0	43.78334	67
GTGATCA	185	0.0	43.280796	65
TGATCGC	350	0.0	42.966557	66
GCAGTAT	130	7.6033757E-10	41.990902	69