/srv/scratch/marinovg/spades-cloudspades-paper/assembler/bin/spades.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/bin/dipspades.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/bin/metaspades.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/bin/plasmidspades.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/bin/rnaspades.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/bin/truspades.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/bin/spades_init.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/VERSION /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/test_dataset/genes_1K.txt /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/test_dataset/reference_1K.fa.gz /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/test_dataset/genes_1K.gff /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/test_dataset/ecoli_1K_2.fq.gz /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/test_dataset/ecoli_1K_1.fq.gz /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/test_dataset/operons_1K.gff /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/test_dataset/operons_1K.txt /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/test_dataset_truspades/A_R2.fastq.gz /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/test_dataset_truspades/B_R1.fastq.gz /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/test_dataset_truspades/A_R1.fastq.gz /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/test_dataset_truspades/B_R2.fastq.gz /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/test_dataset_plasmid/pl2.fq.gz /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/test_dataset_plasmid/pl1.fq.gz /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/manual.html /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/dipspades_manual.html /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/truspades_manual.html /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/rnaspades_manual.html /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/LICENSE /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/GPLv2.txt /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib2/__init__.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib2/disk.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib2/format_stack.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib2/func_inspect.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib2/functools.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib2/hashing.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib2/logger.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib2/memory.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib2/my_exceptions.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib2/numpy_pickle.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib2/parallel.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib2/testing.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib3/__init__.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib3/disk.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib3/format_stack.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib3/func_inspect.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib3/_compat.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib3/hashing.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib3/logger.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib3/memory.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib3/my_exceptions.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib3/numpy_pickle.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib3/parallel.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib3/testing.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib3/_memory_helpers.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib3/_multiprocessing_helpers.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/joblib3/pool.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml2/__init__.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml2/composer.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml2/constructor.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml2/cyaml.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml2/dumper.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml2/emitter.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml2/error.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml2/events.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml2/loader.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml2/nodes.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml2/parser.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml2/reader.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml2/representer.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml2/resolver.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml2/scanner.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml2/serializer.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml2/tokens.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml3/__init__.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml3/composer.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml3/constructor.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml3/cyaml.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml3/dumper.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml3/emitter.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml3/error.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml3/events.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml3/loader.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml3/nodes.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml3/parser.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml3/reader.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml3/representer.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml3/resolver.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml3/scanner.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml3/serializer.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/pyyaml3/tokens.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/bin/spades-bwa /srv/scratch/marinovg/spades-cloudspades-paper/assembler/bin/spades-core /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/configs/debruijn/tslr_resolver.info /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/configs/debruijn/careful_mda_mode.info /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/configs/debruijn/construction.info /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/configs/debruijn/rna_fast_mode.info /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/configs/debruijn/mda_mode.info /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/configs/debruijn/tsa.info /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/configs/debruijn/pe_params.info /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/configs/debruijn/simplification.info /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/configs/debruijn/meta_mode.info /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/configs/debruijn/config.info /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/configs/debruijn/careful_mode.info /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/configs/debruijn/distance_estimation.info /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/configs/debruijn/detail_info_printer.info /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/configs/debruijn/diploid_mode.info /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/configs/debruijn/rna_mode.info /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/configs/debruijn/plasmid_mode.info /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/configs/debruijn/large_genome_mode.info /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/configs/debruijn/toy.info /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/configs/debruijn/moleculo_mode.info /srv/scratch/marinovg/spades-cloudspades-paper/assembler/bin/spades-hammer /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/configs/hammer/config.info /srv/scratch/marinovg/spades-cloudspades-paper/assembler/bin/spades-ionhammer /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/configs/ionhammer/ionhammer.cfg /srv/scratch/marinovg/spades-cloudspades-paper/assembler/bin/spades-dipspades-core /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/configs/dipspades/config.info /srv/scratch/marinovg/spades-cloudspades-paper/assembler/bin/spades-corrector-core /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/configs/corrector/corrector.info /srv/scratch/marinovg/spades-cloudspades-paper/assembler/bin/spades-truseq-scfcorrection /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/spades_pipeline/hammer_logic.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/spades_pipeline/process_cfg.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/spades_pipeline/spades_logic.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/spades_pipeline/dipspades_logic.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/spades_pipeline/corrector_logic.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/spades_pipeline/support.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/spades_pipeline/options_storage.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/spades_pipeline/lucigen_nxmate.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/spades_pipeline/truspades/reference_construction.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/spades_pipeline/truspades/moleculo_filter_contigs.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/spades_pipeline/truspades/break_by_coverage.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/spades_pipeline/truspades/moleculo_postprocessing.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/spades_pipeline/truspades/barcode_extraction.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/spades_pipeline/truspades/generate_quality.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/spades_pipeline/truspades/id_generation.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/spades_pipeline/truspades/launch_options.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/spades_pipeline/truspades/string_dist_utils.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/spades_pipeline/common/alignment.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/spades_pipeline/common/parallel_launcher.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/spades_pipeline/common/sam_parser.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/spades_pipeline/common/SeqIO.py /srv/scratch/marinovg/spades-cloudspades-paper/assembler/share/spades/spades_pipeline/common/__init__.py