SMRT Link (smrtlink-release_9.0.0.92188) +-- SMRT Tools (smrttools-release_9.0.0.92188) | | +-- PacBio Repos | | | +-- bam2fastx (bam2fastx,f67baacccb827ec5738585053666b0a6510a431c) | | | +-- barcoding (barcoding,ec618c97f111444663a45942037d7a338b5fac99) | | | +-- blasr (blasr,e33235ce33b56b5fe6c253bbf94803a8aa8338ad) | | | +-- dagger (dagger,ad2bade56378c5dd4d206d29b72e4d318dda48a1) | | | +-- daligner (daligner,624f85f07617c1bdca2a7ab3f3ddaaab31b365a6) | | | +-- damasker (damasker,e07b6992b65224f684beba6062e6f23ad209152b) | | | +-- dazzdb (dazz_db,c623796ec88cab1a8ea0875f525a7e14a0ed5ed7) | | | +-- dextractor (dextractor,dc9cb20c67b643e8abda8779bb9b496479eff7d4) | | | +-- falcon3 (falcon3,c091dd0b1f1e5a4f0a7719d2a7c77066b0b99e00) | | | +-- falconc (falconc,1f14a10e9830207db2cb6707fb1a6c5f434cfd7f) | | | +-- falconcpp (falconcpp,bd4b05f0750d8430d55fe67533ced5791e4e40f0) | | | +-- falcon-pbsmrtpipe3 (falcon-pbsmrtpipe3,9b3b6a4775ee2a972809d852de99f440c382ce14) | | | +-- falcon_unzip3 (falcon_unzip3,e2a7d291747f607ae126477ed9ae997f8a988f90) | | | +-- gcpp (gcpp,7acc745457074d9b8923e9edf3b68a28fe9d0a79) | | | +-- hpolish (hpolish,e57a12129a681d441f3bfbbe45a8955c3478fb49) | | | +-- ipa (ipa,6998211fef33aa0f5d34fb3f07f9f6fbbb7a9785) | | | +-- isoseqs (isoseqs,ddba0c8864393d8217f142e11d0d641865c60443) | | | +-- julietflow (minorseq,260f955dac5563cdf148a9754ccf64cf33fcae88) | | | +-- kineticstools-py3 (kineticstools-py3,) | | | +-- libblasr (blasr_libcpp,908033e2f0d56750c0fd0f0e2a24f876161c5bdf) | | | +-- minorseq (minorseq,260f955dac5563cdf148a9754ccf64cf33fcae88) | | | +-- motifmaker (motifmaker,fda3389be0d9cd4517a0a11d62f7aea254ab20a0) | | | +-- pbbam (pbbam,76a4c9cc3318708615bc0e348ee88cf5b64c0404) | | | +-- pbcommand (pbcommand-py3,) | | | +-- pbcopper (pbcopper,1f4d3e0090f7b2cd9192b5a0ad4efed773b02129) | | | +-- pbcore-py3 (pbcore-py3,) | | | +-- pbcoretools-py3 (pbcoretools-py3,) | | | +-- pbcromwell-py3 (pbcromwell-py3,) | | | +-- pblaa (pblaa,63acfcb8a98446a4b1234a46dd5943ec50fa03f5) | | | +-- pbmarkdup (pbmarkdup,8489159192c65d73bf9452f92f4c9f0a91505bb4) | | | +-- pbmer (pbmer,c782825f6217944691a6ff1679289e39612e0f50) | | | +-- pbmm2 (pbmm2,31b4be05d87b22d720d7ca7261f76d0526b6b6d8) | | | +-- pbpipelineresources (pbpipeline-resources,b92dc21104850e9553763b2b979183d857a79f41) | | | +-- pbreports-py3 (pbreports-py3,) | | | +-- pbscala (smrtflow,8419ba98693eaab3d9c3f25b9ad0d30a10afe329) | | | +-- pbsv2 (pbsv2,d707f797a6eeb8af53889ed248c05b79bcae702c) | | | +-- pbsvtools-py3 (pbsvtools-py3,) | | | +-- pypeflow3 (pypeflow3,03eda6364441793b24845ef5b8d1ef8c58ce1cf4) | | | +-- raptor (raptor,b12eb9db4d10e055877024204d75fa5f6cb8e5dc) | | | +-- unanimity (unanimity,450908e4d9bbdfc360bbd2e00be32695f25d1d24) | +-- Thirdparty Packages | | +-- Native Packages | | | +-- bzip2 (bzip2_1.0.6) | | | +-- curl (curl_7.64.1) | | | +-- expat (expat_2.1.0) | | | +-- freetype (freetype_2.6) | | | +-- gcc (gcc_8.3.0) | | | +-- hdf5 (hdf5_1.8.19) | | | +-- htslib (htslib_1.9) | | | +-- libffi (libffi_3.2.1) | | | +-- libpng (libpng_1.6.18) | | | +-- minimap2 (minimap2_2.15-pacbio1) | | | +-- mummer (mummer_4.0.0beta2) | | | +-- ncurses (ncurses_6.1) | | | +-- openblas (openblas_0.3.6) | | | +-- openssl (openssl_1.1.1b) | | | +-- parasail (parasail_2.1.3) | | | +-- pcre (pcre_8.37) | | | +-- perl (perl_5.24.0) | | | +-- python3 (python3_3.7.3) | | | +-- samtools (samtools_1.9) | | | +-- zlib (zlib_1.2.11) | | +-- Python3 Packages | | | +-- attrs-py3 (attrs-py3_19.3.0) | | | +-- avro-python3-py3 (avro-python3-py3_1.9.1) | | | +-- biopython-py3 (biopython-py3_1.74) | | | +-- certifi-py3 (certifi-py3_2019.9.11) | | | +-- chardet-py3 (chardet-py3_3.0.4) | | | +-- cycler-py3 (cycler-py3_0.10.0) | | | +-- decorator-py3 (decorator-py3_4.4.1) | | | +-- edlib-py3 (edlib-py3_1.3.4) | | | +-- h5py-py3 (h5py-py3_2.7.0) | | | +-- idna-py3 (idna-py3_2.8) | | | +-- importlib-metadata-py3 (importlib-metadata-py3_0.23) | | | +-- intervaltree-py3 (intervaltree-py3_3.0.2) | | | +-- iso8601-py3 (iso8601-py3_0.1.12) | | | +-- jsonschema-py3 (jsonschema-py3_3.1.1) | | | +-- kiwisolver-py3 (kiwisolver-py3_1.1.0) | | | +-- matplotlib-py3 (matplotlib-py3_3.1.1) | | | +-- more-itertools-py3 (more-itertools-py3_7.2.0) | | | +-- msgpack-py3 (msgpack-py3_0.6.2) | | | +-- networkx-py3 (networkx-py3_2.4) | | | +-- numpy-py3 (numpy-py3_1.17.3) | | | +-- plotly-py3 (plotly-py3_4.2.1) | | | +-- pyBigWig-py3 (pyBigWig-py3_0.3.17) | | | +-- pyparsing-py3 (pyparsing-py3_2.4.2) | | | +-- pyrsistent-py3 (pyrsistent-py3_0.15.5) | | | +-- pysam-py3 (pysam-py3_0.15.3) | | | +-- python-dateutil-py3 (python-dateutil-py3_2.8.0) | | | +-- pytz-py3 (pytz-py3_2019.3) | | | +-- requests-py3 (requests-py3_2.22.0) | | | +-- retrying-py3 (retrying-py3_1.3.3) | | | +-- scipy-py3 (scipy-py3_1.3.1) | | | +-- six-py3 (six-py3_1.12.0) | | | +-- sortedcontainers-py3 (sortedcontainers-py3_2.1.0) | | | +-- urllib3-py3 (urllib3-py3_1.25.6) | | | +-- wdl-parser-py3 (wdl-parser-py3_0.0.3) | | | +-- zipp-py3 (zipp-py3_0.6.0) | | +-- Java Packages | | | +-- cromwell (cromwell_47-pacbio1) | | | +-- jre (jre_8u192b12-hotspot) +-- SMRT Link Analysis Services and GUI (smrtlink-analysisservices-gui-release_9.0.0.92188) | +-- smrtlink_ui (161557be) | | +-- smrtlink_services (2.0.0+92188.8419ba9) | +-- chemistry-pb (9.0.0.92017) | | +-- PacBio Repos | | | +-- pbcommand (pbcommand,b8a21075df81029f4fd8cd2006497614ed99dcaa) | | | +-- pbcore (pbcore,2dee73b80e3dd9c8b6bf13738366a2b9674b54fa) | | | +-- pbpipeline-resources (pbpipeline-resources,b92dc21104850e9553763b2b979183d857a79f41) | | | +-- sl-helps (sl-helps,02f9289fabf84abd3d58c107224c95d1ce7b32d8) | | | +-- smrtflow (smrtflow,8419ba98693eaab3d9c3f25b9ad0d30a10afe329) | | | +-- smrtlink-build (smrtlink-build,3676645ba103c57d6e00d825734bd5853f5cabf6) | | | +-- smrtlink-ui (smrtlink-ui,161557be5e0d320ef40b97a2884b7d328eb50962) | | | +-- xsd-datamodels (xsd-datamodels,95515f0006e464115c2f80a09851764ac0476066) | +-- Thirdparty Packages | | +-- Native Packages | | | +-- ncurses (ncurses_6.1) | | | +-- openssl (openssl_1.1.1b) | | | +-- postgresql (postgresql_9.6.1) | | | +-- readline (readline_8.0) | | | +-- zlib (zlib_1.2.11) | | +-- Java Packages | | | +-- jre (jre_8u192b12-hotspot) | | | +-- postgresql-jdbc (postgresql-jdbc_42.1.3) | | | +-- tomcat (tomcat_9.0.14) | | | +-- wso2am (wso2am_2.0.0) +-- SMRT Installer Nub (smrtinub-release_9.0.0.92188) | +-- Thirdparty Packages | | +-- Native Packages | | | +-- bind (bind_9.10.3) | | | +-- openldap (openldap_2.4.44) +-- SMRT Installer Misc (smrtimisc_9.0.0.92188)