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L]! ]! p" ^"  " ^" 4'"9/";7" ^I" _V" R`c" `h" Ur" a" Ba" xa" ":" " a"4:"::# # # +# >8#A# N#CW# d#Bm# 1{# #2`$20   LxpT  @ d223p3$4t9bam_import.o/ 1371478023 1028 1024 100644 100832 ` ELF>H!@@HHH=I1fAWIAVAUATAUHSHHHtDsK HEA9CS#A9'CH{H3@C=?C CAs0K 9HHcA<HDA9uHA9t AA9uDEu)zHcHcHMHEH)H9%HEHcH3H<D+SK HcHUA9HUDsMtHMcB(AHEHAEH[]A\A]A^A_ÐADS 9 H Hcƀ< HDAfDHx AA9u@EDs A9t$t$HAHcHAHE9DQ tHH}HHH HHH HHH HHH HHH HHusDHEHM)HcAt:A)E1HcHcBDvA1ҿ,DDs A9~߉t$t$H8HcHAfDDO t AHE9uH?| 3HHU&HUHEHT$HT$HEf.AWAVAUATUSH(?-Ht$TJH=H$1 HIH$@E1E1IGI3HCH;|8 tkHIHsHHHL$Hھ LA~TE9uEt:EIcHLH;IHC|8 uHWHD8H;fDAI?LH<$H{HHD$(H(L[]A\A]A^A_DH$ffff.AWAVAUATUSHH`?-J @ H=HD$X1H|$X$( IIHD$X@IFID$dHD$(fHT$(HL$|1L,HD$(HxEEHT$(HL$|1LHD$ DD$`HD$( 1HxAU A9UD$0EeroD$`A9AL$ wD; r,AI*LD$PYXL,D9D$`DD$@)I]HD$ 0H@HtH)u1AՉHHDD@AL$1Lt$EMI݉T$ [DIFHt$ H<=l$ D)D9C9IDDD@ tA111WDIUH|$ H4H<HD!‰AEAED$0HcL$`IU H H ȃ|$| H2A~AFt,A9F IHcЃAF A~uA9F I~I6@AF=?AF AFWAFE9LMLt$DDHDD@IUH|$ J4J<HD!‰AEAL$ w; r,AI*LD$PYXL,D9D$`DD$@`AAAILLHHA9SED$uLl$Lt$ht$ fHD$L$LHD$IHt$LD$L^t$MP ILHH IHA(I1LH|$XHD$(HxH|$(A]H=1t$du1HH߉HEHAMHEtM1IUƉɋu(IU I}H HLHH IHA(I=LD$@H|$8LHLCH}HD$ LEHHLD$8DJ)HLCLH}LEALD$H-tHD$ HH1DQt 1EC LHL{ H}L}?*J@CE1LHL;*HMHuDA*ySBHcI~)1ASHH9B|$PDD$XD$(BL L$`L$hL$pD$ L$@$L$8L$HAAD|$|  Dd$ Lt$(Ll$8fDHL$8H|$(HQLmI= HEx:/ x:% AL$;K(DDHPEt$HC0IcHaDDH9A0C'ciIffdHZB H}DŽ$5 H}AAGcHGH$W H$1HDH$HP,u@HMEdD;c(HC0McIAHUIHuLHHHEAD(AD;c(HC0McIAAHE@AF$G|/ t D+D$ Dd$ DT$ C ES$HDH{0D   Ɖ  ƃs(Hc$L$DD$DL$DL$HC0DD$L$$@H{0 ʉ Љ ‰ Љ ƒS(HcHC0fDHM9*uyDHD$8DE H=1f.~@f{AĉCts HHs0A9 DcAD$Dd$(AD;c(HC0Lcd$(1HcILDKEU1HUH) HcA4PH;S| SHHL$Ht$DD$$$HL$Ht$DD$HcH9Z BHcIE 1HM9!AHEH$H91H$1A$H$IHH$HEHEH9rA A AcAFAA H{0DD  Љ ‰ Љ ƒS(HcHC0KHEH$H9yfH$1H$A$IHH$HEHEH9r3HEH$H9fDH$1H$fA$IHH$HEHEH9rA AH{0DD  ȉ  ȉ K(Hc$$HC0AHEH$H9ffDH$1H$fA$IHH$HEHEH9r"1D$@H'H=AiAFDd$@A$AHEH$H9H$1H$A$IHH$HEHEH9rAHD$0Hx0 HT$0HzHL$0HyMDd$|LD$0IxiHD$0HxVHD$0HxCykjH #HL$0HyHD$0HxHT$0Hzs HHs0H|$0DCA1HOH=LD$0IxHD$0HxxH\$Hl$Ld$H?-H=H1HtP(Hÿ HCH+@IHhLcI$HHl$H$Ld$HfHfffff.H\$Hl$HHHtRHoHtH}HH;HCHxH{HHl$H\$H@H\$Hl$H@           Parse error at line %lld: %s rSNSQLNinvalid CIGAR characterinvalid CIGAR operationunmatched CIGAR operationinvalid hex charactertoo few values in aux type Bunrecognized array typeunrecognized typerb=ACMGRSVTWYHKDBN[sam_header_read2] %d sequences loaded. [sam_header_read2] duplicated sequence name: %s realloc failed to alloc %ld bytes append_text FIXME: %ld>=%ld, x=%ld,y=%ld [sam_read1] missing header? Abort! [sam_read1] reference '%s' is recognized as '*'. Parse warning at line %lld: mapped sequence without CIGAR Line %ld, sequence length %i vs %i from CIGAR CIGAR and sequence length are inconsistentsequence and quality are inconsistentmissing colon in auxiliary dataParse warning at line %lld: integer %lld is out of range.length of the hex string not even 5a 0`   0 ` Y0`p= ף??"intV[WzzB ; l s I z- Y 1  I# # # # # #( #0 #8 #@ #H !#P "#X $ #` &#h (I#p ,I#t .#x 2e# 3l# 4# 8&# A# JW# KW# LW# MW# N# PI# R,#   # # I#B&;B<;BB1 I1-2e448; 'l(#m(#s)#*@W X# Y# Z# [W# [W# [W#( \#0 \#4 ]#8^ atid#pos#bin#### # # # # #8ͻ a# I# I#$ I#( л#0l7 (@/fpA#ksBF#strCL# D# EI# j4y5z@< buf# I#endI# I#f#b() @# @# @# @# )# /# 5# 5Vxb/IMWMWMIMP@sP<hR@`I``<v:vv<vppstrL x y1W1W1P1ggg<!;"I #<@ hkeyVret x@$ inc@ k@ i@%@%@$%%I ksF h"* #*<"  #<I% xIIx ksFIstrLI$ iI& '(msg<)* +,% 7 -6 -@ -K -V .a /0m F\ f ksFI ksFIstrL ksF1H3 (fnH<(_nH2J3sJ3nKI4KI3mKI3fpL5ksMF_3strNL6 %L7L/2L3 2LI87 P -H /0Q 8\ Q - - -w -m 9 [- 9 - h@%) j@: t@$ keyV val$ inc@ k@ i@: tmpV$ tmpbpb%dp keK$ ilI;1tp(fnt<4vpV cwI2wI3retwI2wI3fpx5ksyF^3strzL4{] k|K;4%~2~<2~3 2~I=87 w-H /0Q >\ - - -w -m 63s5lenIw03iI8\ $- - -w -m 8E-8 -, -! - /07 8> o-T -K /0_ 0j 60x /0 0 /? @ R0 >I-<06\0 /0 8> Y-T -K /0_ 0j 60x /0 0 /? @ R0 >3-<06F0 /0 /0A ?L 0U 0^ 0i 8-/0<?u ? 8 + )-+8 7- >a-+> - <0 0 <0 9 - 1IS(hp3tmpĘ3iI)-1p(fp5retIP4IL2p3strL8:-G/0]0f>\ 8- - -w -m 8:-G/0]0f>+-9* +9\ - - .w -m I-begend1I (fp'p(b/3retI2I2I2I3zI3c 3strL3ksFAR-l6rBzCsD\  - - -w -m A\ - - -w -m E\ - - -w -m A\ -- - -w -m 6CsCtCi ICop ICx!zE\ #- - -w -m 6GB&AR+-l;B/ID?- -EFv- -FC-+>\ - - -w -m E\ J- - -w -m 6kGKBK/BK3 BKIA\ L- - -w -m A\ N- - -w -m EO -6CiSICpTE\ Uq- - -w -m 6GWBW/BW3 BWIE\ c- - -w -m 6JGeBe/Be3 BeIAR^l-l;GhBh<Bh3 BhIDZ-+E\ n5- - -w -m 6CsoBoCkeyo ARu-l6 CnHYCkBCpA - DR-l6BIAR[-l/CiI/CcI<BIARx-l6IIx|PAR}-lA ~!- F-+ARk-lA - AR-lD - ;2 GB<B3 BIE] -+E -E -FM-a ;J!Kfn<CfpB;!GL<B3 BID7 -H /0Q M"KfpF - 5)";4}>" "NW"p= ף? 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И7!)?!)L! \X! e!)m!)v! ]! d! #! !)! p! @! ! c! !`*!*! !  !z*"*" |*" 6" D" ]" j" w" [" 5" ">" "E" "9 w5 wQ w$ o 0 3)[b ` V 40@l)$`*sam.o/ 1371478023 1028 1024 100644 28536 ` ELF><@@AV1AUATUHSHHEHHEHCHEHCHEHCHE HC HE(HC(HE0HC0Dc0HE8HC(HCHC A|$HC8HC8Hu8LHD+McLHCLIEHC~CE1fLcHCHUBCN$HEJ<I$AEI9H[]A\A]A^ffffff.Hu H1Hffff.H\$Hl$HLd$Lt$Ll$IH8IrHHHD+bHDHqAD+A<$-tKLHHCHHCHHl$H\$Ld$ Ll$(Lt$0H8@A|$uH=fDwHHtLbHCHHLEAt4PЀ HDHH BuAuHH$wA0 Dl$A<$-D$jA|$^H=HHHCHsHfLHHCkHHHCMLHIHC1Lu8Dm0H0Mt ʉ Љ ‰ Љ AD  ‰ Љ ‰ Љ ƒ9;ID$8H<IcLEl$0ID$8El$0B(HHC0 H &fDHL=vH=1YfDDh @H14A<$-LHHCtϾXHHF hHH1IHCLP0H@8AU0IE8HCAE0IE8HKP0Hx8AEHC1E1~=HPH@H{AH hD*1HHCD9 L0DAE1A|$HHS;t~H KI|$8HcAL$0ID$8xHH A0rfff.HSHtWHHtH{u/uH[DH[f.H[f[fffff.Ht3t-uHGHHHfDHfH\$Hl$HLd$HHuaHHHHsHIHs HAD$H$Hl$Ld$Hf.HH$Hl$Ld$HDfAVIAUATIU8SHLLIHI LLHLy1LMtI}0L[]A\A]1A^fDH\$Hl$1Ld$HHHtOHxHHHIHIľHA$.faiAD$tHHl$H$Ld$HfDHtf==HuH (H1fH "H=H1Lrw@SQ SN:%s LN:%d [samopen] no @SQ lines in the header. [samopen] SAM header is present: %d sequences. 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L8 |G V c p { p  T a    p      $f (   \ tPp @pbam_index.o/ 1371478024 1028 1024 100644 152952 ` ELF>@@AW AVAUATIUSH8w94wAI*LD$YXL,E9D$DD$ rH8[]A\A]A^A_AAAILLHHA4$9IT$DCD$DD$H$D$H$L$Hɋ t$M|$MD$ AHH9ITvHHHAHHBHH9wH$LMMLL9IHD$LH9 L9LLHFHL|$$tH|$8tKHX[]A\A]A^A_Ht$0Ht$(HD$@HT$HH9sH HHJHHHHH9wH|$8uH|$HHX[]A\A]A^A_H ffffff.AUL?HHATIJHUH9SHL`v~L^LHH4@MLL9wUHHOHHHHHOIJH9s=LL9tCMBHHMHILIM*M9rL9IvHHHHL`[]A\A]HLMM@ATIUHSHHHHtfDHLHHHu[]A\ATIIUHStEHH\>H HULHE1HMHKHMHHHCHIu[]A\fDU ISH1Iv6MWI*^f.L,ICIHIM)IIL9sNLHE1HHH9 s#LLHLLTLPLLAH HL9rEbZIHH^H,>H9vtIHIIL9sOLI9H)H9|v?MYLKfDJI9|v!L@LL@L@HH< H9L\ rIHIL9w[]\L,I1A LAHL H*Xffff.AWAVAUATUHSHHHHHAv'fDHHH9wHcD$ H<@HH0H}IIIHHfDI9AHIMHL)HHHLH0H9H9H9tHHPHHOHHH7HWHMM] f.IIJIM)ODI9rHBH9@HIBIRHWIRHGHHH)LL)HHHHH9H=~M.MVEfIMj HLLI9@M9MnI~EfIHH9FsHNHVHFHHNHVHNH[]A\A]A^A_HHBH9(H90wH9LROLLLRLQLBLJHH~IR I~EfIIH=LIL(H9HLbHsL)LHHLLHL[HL9,MHMIfDL9sOLI0H)I9tv?MPLKfDJI9tv!HxH8HxHxHH4 H9LT rIHIL9wH[]A\A]A^A_fff.AVHHHL4AUL,>ATL9USLfHM9cLH)HHH?HIUHHHHH9sHHpIUHPIMHIuHMH9v IuHUHuIuHuIMHMIUHH9vHuHHH0HuHpHUHHMHuHHI\$MMH0HuH}HpHUHMILMPLL)L\I9sHHBHL)I9| wI9w/HLHrII1HrIqLZHJH}f.HrHMI9HuHrHuHzHJraLv\L9s3LeM9HEI9EsIMHUHMIMHMIEIUIHD$IFHD$HD$HT$[]A\A]A^LjAVAUATIUS~hHcA1HEuHHIDDL)H*Y,HHLHHPLLCL@H HSHL9u[]A\A]A^ffffff.AWAVAUATUSHH|$XHH" 8H$H$HD$@HߋH$LcLHH$Hh~6IL$1In(HDHL9uLH|$XH$HD$pHDŽ$HDŽ$D$` HBH|$PH|$XHGHH D$PLD$PL$L$ADD$xDDD$HDD$,Ht$@H|$XD$|HD$@H\$p9\$x(DL$xExA9\$x x!HD$@DHD93HD$@@  HT$@B;D$,|$H?H$HcT$`HAL$At$ A9t$A4$rrAT$9~ wD;<r,AI*L$YXL,D9D$I\$D$H1AЉHD:@}It$|$H<H!2AD$AD$HþHI\$ C1HCHCL$HHLLD$PL@K|$,=HT$@DBEDD$`,LD$PD$,D$HL$H|$XO HGHH H9L$PHD$@@ H$HD$@HL$Ph@ۉ\$xD$,HD$@@ H$HcHHXHD$@p HD`Hp0ADkhD9A93H{IcHt$PD)H1H H<uH4HH9u+kfH$,|$`H$LcD$`HBLD$HN$AL$ A9L$A<$rmAT$9a w wfD;4r,AI*LD$0YXL,D9DD$`oI\$AJ1DAЉHD2@It$JH!2AD$AD$HþHI\$ C1HCHCL$HHLLD$PLBH$LD$HKHBN$AD$ A9D$A<$jAD$9Kw w;4r,AI*LD$HYXL,D9DD$0I\$AJ1DAЉHD2@It$JH!2AD$AD$HþHI\$ C1HCHCL$ʃHHDŽ$HLL$HDŽ$LBLD$PKL$D$HN1AD\$HDDRKf.IT$D;DЉ)9HCA9t(‰Hɋ:@;tAA9fDDHɋ:@#DHI\$ K;  H{ΉKHCOD1DAEQAHIT$Ht$0I|$HHt$0I|$ ID$HID$ I|$H|$bt$`H|$XL$Lcd$`Do HGHI I@JC 9CrS9pHp3D$H1LKAADIɋ:@XD$HDF1AADЉDYuKHS|$H9< D؉)9FA9 ‰Iɋ:@ tALD$PH=1HDŽ$#AILL꾪HHA$9"I|$DED$,DD$H|$D$,H|$L$,Hɋ0T$,M\$MD$ AcI~I~HL[]A\A]A^A_H[]A\A]A^A_AWHIAVAUIATUSH(5{AH|$LȉD$AVH$D$ @H$IGL$IGL4PAD$҉D$H|$LD$A$=1fID$ډɋHHIl$ ID$LH|$ȉD$EH|$LȉD$D$UH}tBDBHwHIIf.HHL9HHHHHHHHuT$LD$}toHHH4H9t#1LAD$ IT$HH HC CCHLAxoAD$ IT$HH HC C9EDmD{ E9f}SAEuG91E9DHAyCHD[]A\A]A^A_u HHu0T$T$fDHHHHC(H0f.HH[]A\A]A^A_f.1HEAAjAcDALfff.AWAAVMAUATUSHHHt$8D$Ll$PD$H|$DIDH @LLALHHyH$M$tI|$0L$DH[]A\A]A^A_[bam_index_core] Invalid BAM header.[bam_index_core] the alignment is not sorted (%s): %d-th chr > %d-th chr [bam_index_core] the alignment is not sorted (%s): %u > %u in %d-th chr [bam_index_core] bug in BGZF/RAZF: %llx < %llx [bam_index_core] the alignment is not sorted: reads without coordinates prior to reads with coordinates. [bam_index_core] truncated file? Continue anyway. (%d) [bam_index_load] wrong magic number. [bam_index_load] attempting to download the remote index file. [download_from_remote] fail to open remote file. [download_from_remote] fail to create file in the working directory. [bam_index_load] fail to load BAM index. [bam_index_build2] fail to open the BAM file. [bam_index_build2] fail to index the BAM file. [bam_index_build2] fail to create the index file. Usage: samtools index [out.index] Usage: samtools idxstats iter->curr_off == iter->off[iter->i].vBAIftp://http://rbbamrwb[%s] fail to open BAM. [%s] fail to load the index. %s %d %llu %llu 0 0* 0 0 %llu bam_index.c 5a 0`   0 ` Y0`bam_idxstatsbam_iter_readp= ף??]_L?C6int^^W'W)^1-244;8BBW B 1  W# }# }# }# }# }#( }#0 }#8 }#@ }#H !}#P "}#X $!#` &'#h (W#p ,W#t .e#x 24# 3I# 4-# 8=# Ap# J{# K{# L{# M{# N# PW# RC#  ! !# '# W#= BS B@ ,  -W# -W# -W# .W# /W# /W#  0# 1{# 1{#  2{#(fp 3{#0mt 4{#8 5S 6! @ W X# Y# Z# [{# [{#  [{#( \#0 \#4 ]}#8} ^' wtid #pos #bin # # # #  #  # # # # 8  w# W#  W#$ W#( #0 т  0B CW#tidDW#begDW#endDW# DW#iDW# DW# E# offF#( W BnC#D#E #F # sW{ j; y CVD{#D{#EW#F# iW#fdW##}#}#W# i#$W#4W#8W#<W#@}#H}#P}#X #`!#h$}#p$}#xWy B%a/u0#v0#16m7#n7#8#9; n<#m<#= #>(@ @#@#@#@# @ #@ #@ #  @0   %  v v@J h@J key@ inc@k@i@@P  q idxq t iuWluWmuWkvpz  idx iWjW `W ` ` M{L M{MWM  !{!"__n! { x{#@ ${ x${4 s4t4i4j44\i \ b\\i^Wbeg^Wend^WbW@ h@ g} g}g} }gW g$PW __cPW%,W] "beg,"end,!,] &i.W&k.W%;W "beg;"end;"b;'='>@Jh@ @@ j@( t@key@ val@inc@k@i@(:tmp@ tmp@) * * + + ,+ -+ +-+ ++ ,+.-+;.4d/n404041a24d2a42b434W34W,2p42i42eb4,)2i44-2p42j42k42ea42eb442p42i42eb4t B.4/i45n4T5l4Q2k42tmp4.4 04/l42i4.404/l42i4-2tmp4.4\/n45a4T64\]_L?34W2gap42tmp42i42j47 4* * -+ + + a.4t/n4/a42d4W2top4t34t2rp4342s42t42i42j42k47 4* * -+ + + V84/n4/arr4/kk42low4342k42ll42hh42mid4,62t4,M2t4,d2t4,{2t4,2t4,2t4-2t4.40/n4/a42i4Wj4W42tmp4JhJ binJWbegJendJkLlM retNW@h@ key@ ret@x@inc@k@i@@@8 !/fp2b2h!2iW2retW2idx 333332c!33333339 :0~*\*Q*F*=-;g+p+y7O***-+: @* * -+ + ,*+ -+ +-+ + +,t+.4;;: @G* * -+ + ,+ -+ +-+ + +,,+.4;;-+++++: *1 *( * -+< +E +P 4+\ :0*\*Q*F*=-;g+p+y7O***-+: @,* * -+ + ,+ -+ +-+ + +,;;-+.: @* * -+ + ,+ -+ +-+ + +,;;-+.-+++++:01*\*Q*F*=-;g+p+y7O***-+: @N* * -+ + ,+ -+ +-+ + +,;;;-+.: @* * -+ + ,+ -+ +-+ + +,;;-+.-+++++:0*\*Q*F*=-;g+p+y7O***-+-+++++:0*\*Q*F*=-;g+p+y7O***-+-+++++:0 *\*Q*F*=-;g+p+y7O***-+-+++++:U  -+m +x + + + -+ : $!-+ + -; < N!* = < x!* = < !* = 7 * = w.^"/idx 2k2iW-3 3 >i *v ?B%@idxB%@fp Ai B Ak ,#Ax C * ,$B B ,h#AxC * ,d$Ap -AxD #* D #* D !$= D ""$= D &D$= C '= ,$Ex2WC 3* 4Ax6WD 8$= C ;= 4Ax?C @* H%%F %"fpF &iHW'I&idxJ '[ '\ &key]']&k^&j_W&ret_W&p` &xpWF ,@_fnAfp B}Afn},,Eidx w0>M%*_%-+j%Gt%+%DL O&* *x *l *` HL V,'* *x *l *` D WR'* ,%,+%+%+%+%;%+%+%+%I aHL c'* *x *l *` D d(* DL fW(* *x *l *` Hh=****-+: @P)* * -+ + ,(+ -+ +-+ + +,5)+.4;;: @** * -+ + ,)+ -+ +-+ + +,)+.4;;-+++++HL jz** *x *l *` D k** HL n** *x *l *` J<++%D r+= C s= DL x}+* *x *l *` D y+* HL |+* *x *l *` D ~,= C g* HL b,* *x *` *l C * ,,As}4ApAlWK--"url'&fn}&fp &buf'--&lWyF -@fnAidx -B}>,L,\-M,+,+,+ -+-+"-FWl.@fnNB}B AfpAidx OWw.@fnFW.NWNF W1N WN Aidx B!AfpAiWP*1 D /= = ,0&kAh H  C0* * >  * * -+ +4 ++ += D #i0* H $0* H 0* > "* D &0* C * = *1 B 1FJ3@idxJB%@tidJW@begJW@endJWBL] AiMWQMW\BMWAoffN&kOBP BQBRH [g2*< *0 *$ -+H +R ,2AnaWH i2* * > J* * -+ +4 ++ += ,!3AjrWAps H q3* * > J* * -+ +4 ++ += -Ab}Al~WFW4@idxB%@tidW@begW@endWNBAoff?4NFWJ5@fpN@bAretWPZ5 >c * * *u -+ + Z5 B J5FW"6@fp@idxB%@tidW@begW@endWN{RAretWBAb 26 BS }G6 "66 \p= ף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w w w w w(w0w8jwjkw8klw0lnw(npw prwrtwtuwuvwvww8wxw0xzw(z|w |~w~wwwUz\\8T8p2$"wSwz|z0PxVxz|V10L10O#1P  t2$|" Up^Ut   tt % ttt% ZYX ttt [QP ZYXCQ0UU:JTTTTp^t  ttt [QPwwww w(w0w8ww8w0w(w wwwww8w0w(w wwwwUSSSTQ4d_(q_Ed[(>[>r{p40 qx40 qxQw[w{[{[ ([Y_`_ (_YP (P+GYQXXQVPppPppPZRrpR&rp&XRr"XUaqZr_XTlqTPQqpQTwwww w(w wwww(JU\hXhUU"U">R>`X`RXR"p"4pp4S\p\ppS\wwww wwwUVT\SUsSw w wVw VWwWYwYZwU|TWVuO\OS|SY\'.v.Nvv`awauwuwww w`4U U0 1 Y`U[M[[p [Pp ppTPpq"pq"@<V<T<MSMYMrYrPryyyy  w  w  w  w   w(  w0 $ w8$ w w8 w0 w( w w w w 9 w9 : w8: ; w0; = w(= ? w ? A wA C wC D w P UP V V - T- S : S: D {p7 R 2[ y R \ | \ ~x ~ = \ P ^ ~h ^ A ^ P _ C _ p Q T Tp8 ? y{"@? y{"@z s ss ' X' B XYB p Xz S ] {p ] ~h ~ ? ] U ~p ~ g Up U ] U  ]  R  Z a R B Rp ]  U + Q+ ? P B Pp U Pp y P U ; V : S: D {p [ D X X $ P  xx $ xxP R wR d wd j wj n w n o w(o *w0*+w(+-w -/w/1w12w28w0P V UV ^ uP u Ty TP Z QP T V Y V28Vh /]28]h 1^28^E Y28YE c Xc e Qe k Pk o Qo P28P E P p pp v vv  p  pp # Q# E QpE vv st"@ st"@st"8 [R U Uv UR28UR v vv@BwBGwGIwIMw MNw(Nw0w(w www@kU@kTk\@kUv }"pppwwww w(w0w8#w##w8##w0##w(##w ##w##w##w#\2wU\2~*/P/#~#1~1\2~PES11P11Sau0EPPP"~ ##PJ#N#PN##~#1~1\2~P##11\2( (~C~#0$0%C~ >N~~ W!~8'_(~,-~.O/~/0~O0_0~x00~+11~1\2~( (~C~#0$0%CW!~#+~ ,1~1\2~( (V~#VVAV8'1(V.I.V/0VO0_0V00V11V( (~S~S#~#1~1\2~( (%~%C~C#~#O0~O0R0TR01~1\2~(~(C~CW!#+ ,11\2z~zR#~#1~1\2~(0(##11\2(0(##11\2(~(##11\2#~#1~1\2~(0(#~#J#~#J##~#1~1\2~~ ~~#$~$&~***~-.~O//~_0x0~11~ #$$&***-.O//_0x011~ ~~#$~$&~***~-.~O//~_0x0~11~ q3$#"\ \\#$\$&\***\-.\O//\_0x0\11\SS02   #$ $& *** -. 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"   Pd@ P p $bam_md.o/ 1371478026 1028 1024 100644 58304 ` ELF>ؘ@@AWIAVAUATUSH_dH%(H$1G T$lHW0Ht$`,$DŽ$HcHHHHD$pEOHD$8DL$hu HD$8DT$l1L|$XD$TAgfffLHL(AH@LL$0LL$pHD$@LL$HE1EZtjteƒtEτ LL$XD$THD$HAA;D$T LL$HAAAuLct$h1Lt$`E8@EtH THA9AE׉ЃHMDEEt ED9tt1ɅH$u fDA))ƍADF0DHuIUHAHH;D$0HD$@IHcD4EEIuHL$8LHLjL;l$0A HD$@LH|$@HL HHH HHH HHH HHH HD$8HHt$0HpHT$ $DL$DT$Ht$8 $DT$DL$HT$HD$@HF HT$8HB(1$A9L*\DDL$hEL|$XH$1ۿgfff f.É))ƍCDf0D!HuMuHLH;D$0HD$@IDHcD EeIuHt$8IB0L6$9$~~fAAwt$0tnLd$pE1E1A$AƒAYQHPf.AGAID9D$lD$l[D$lD$lt^AWAOBHcHHAG HIO0~51vҍ4f TPHA9WHD$8HxH$dH3%( H|$8H[]A\A]A^A_E HH|$@HH HHH HHH HHH HHH HD$8HHt$0HpHT$ $DD$ DL$DT$D\$(Ht$8HD$@D\$(DT$DL$DD$ HF $HT$WIUH;T$0HD$@r|HH|$@HH HHH HHH HHH HHH HD$8HHHL$0HHHT$DL$DT$HL$8DT$DL$HT$HD$@HAHt$8B(0HDEHc\$0Ic1H)H\$`ut ED9tuHAHTAOAWMG0AG IHcHcLHHA9BD,;AЉAAHMDEEUD$l'LAG HHtCHD$AD9H=IO01HLL$iLD$lLAG HDH L`LHT$8HH9WHBHD$@IO0LL$@MH=1HLLD$@KZL DDL$hDEL$hDL$hhDT$0E1ۅH$uÉA))ƍCDv0D1HuIMHAHH;T$0HT$@IfHcDEuIuHD$8IHLkL9l$0HD$@wrLH|$@HL HHH HHH HHH HHH HD$8HHHT$0HPDL$DT$HT$8DT$DL$HD$@HBHL$8E^B(L) HcL$hHL$`D1EEAD$Hl$xL1L|$8D$MHl$0H|$@D$HD4EHHH9wPHHH HHH HHH HHH HHH HIoHH $H $IGHIL9HrD4DI7vHl$0D$ID$Hl$xD$H|$@DL$hD$1D$DT$0QM&HH|$@HH HHH HHH HHH HHH HT$8HHHD$0HBH $DD$ DL$DT$HHD$8DT$HT$@DL$DD$ H $HPfHH|$@HH HHH HHH HHH HHH HD$8HqHpT$HL$8T$HAHl$0L|$XIHl$xH|$@I]H9\$0HD$@HL$8B(0HH$dH3 %(H[]A\A]A^A_LLH I]H;\$0HD$@slHL$8B(0HHH|$@HH HHH HHH HHH HHH HD$8HrHpHT$8HB(HH|$@HH HHH HHH HHH HHH HD$8HHHT$0HPDL$DT$HT$8HD$@DT$DL$HBHHD$8H@HD$@H{H1fHrH9HHLL$@DDI4D F9 tH9GDLHL(H@LL$0HD$@L|$XHD$8ZLHL@N1fAWAVAUATUSHHGODw Ht$(T$NIf.A4@8FֈTHL9uDT$0AID9L$XWH$H$DuE~4M1@<A4@@8vW@@(APHA9|H|$pH|$PDT$0DET$0DT$0AD$(AEȸD$P@ff.fDAWE1AVE1AUE1ATIUSHXdH%(HD$H1fD$@rfD$0wD$D$D$$fLIP4vIH=1HT$HdH3%(HX[]A\A]A^A_$D$AAuDhH= 1D$D@ 8(AD$@AH= 1D$@A$5EHD$0HHD$D\$EP9HHt$@1I<IƸMlD$IVEtHD EHt$H$HcI|E18HD$HøDl$A3D|$ MtL$DLHH<$HHLx9t4LIFHcH|$H@H4HT$,HIċ+ExT$LH|$ iT$LHS 9NC FHT$0HT$H|$D\$EbH|$P9NH5 H 9H 0H 7H (H /H ,H PH M@HtH{0HLH|$LH<$1H|$@H 4`IFHcH=H@H к1NMMDRGBQZQEqreuNhbSC:n:Adbhu-[bam_fillmd1] different NM for read '%s': %d -> %d [bam_fillmd1] different MD for read '%s': '%s' -> '%s' [bam_fillmd] unrecognized option '-%c' Usage: samtools fillmd [-eubrS] Options: -e change identical bases to '=' -u uncompressed BAM output (for piping) -b compressed BAM output -S the input is SAM with header -A modify the quality string -r compute the BQ tag (without -A) or cap baseQ by BAQ (with -A) -E extended BAQ for better sensitivity but lower specificity [bam_fillmd] input SAM does not have header. 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(!I!n!! ,!/MP '  MR`'*-PsPsPs|*-L  @ '  L  @ '        L R M R  M R  U]( R  U]( R  U]( R  pHP[ ' &[ $J  DOIm (4@p7ptw~jANPu!!!! % /usr/include/x86_64-linux-gnu/bits/usr/include/usr/lib/gcc/x86_64-linux-gnu/4.6/includebam_md.ckstring.hstdio2.hstring3.hstdlib.htypes.hstddef.hfaidx.hstdint.hstdio.hlibio.hbgzf.hbam.hsam.hkprobaln.hgetopt.h =I/IKI`yX{xXzg;=^YeYsX.Xf|xfJX /=d!s. 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M [ 9i dw    Q   ;  b  Z v& 4  B P ^ Bl mz  e     *  = I 3W ]q ^ i j  g   ^   & 4  C R qa Sp  0 #  G S G. A S ^ q W % * B   " ) 6 VH "S ^ k +} A  ) > 3   M T \ pd v { %  *  < + " p V b  % 4 * j   (! `) 1 C Q W i %u * ) &  H     x    ,& y+ 76 D I ` p   |     l  *    `   D % A 08L  [ cs {      d         B ;Co K h X @ a  j         ` N          <  p  ' 8: ? %J O *Z _ @j xx } z C   y 0 Z     l     3 $ v0p 8 @ 4S X 3c j v ~j   > b 3     P p     ( 2@ :Y J +O@ WY t@ |Y @ Y  N p * z >  3 r}    $ ) : G sQ Y m v    07" A5 :  E J U Fc j v@~x   %  * n @  ` S    * " @- w4 @`HP c F h s  x L ! ! l " 8" ["  ~"  " '#" - #= $B M P$R ] $b livz~ $ $ $    % ? L% ) %/ yF <S [ck %~ &  @ p v'  '  ' /( {($ (- A (KASI_AgIt 8)} ) T     XaI(I < Lpx`p P tp  p 0@<x`faidx.o/ 1371478027 1028 1024 100644 93088 ` ELF>h@@AWAVAUATUSHHHGHt$8OE1D$0IfIF H|$8HILHL@T$@$1D$0D$09CLsHCE.J, 1EtME1D$4tBUHut@H)u1AuAA1T$4MFEDDAuwu3IFDHH<ȉT$(LD$DL$ T$(LD$DL$ t?D|$4DD)E9LFE9uKDmHf.HH[]A\A]A^A_ÐMDKDmHff.AW AVAUATUSHH|$((HD$HT$HBH|$(HD$ XHT$(H|$ H3HD$ HDŽt*H|$ HDHt HfAA=D$T$11T$IDIHH$LDefEcHt$PI|$HLD$PI|$ ID$K4@HE$ID$ Ht$PI|$HLD$PI|$ ID$K4@HE$ID$ AAAILL꾪HHE$D9=ED$ut$D$ML$L$Iɋt$I|$MD$ H%s [fai_build_core] the last entry has no sequence [fai_build_core] inlined empty line is not allowed in sequence '%s'. [fai_build_core] different line length in sequence '%s'. [fai_build] fail to open the FASTA file %s [fai_build] fail to write FASTA index %s [download_from_remote] fail to open remote file %s [download_from_remote] fail to create file in the working directory %s [fai_load] failed to open remote FASTA index %s [fai_load] build FASTA index. [fai_load] fail to open FASTA index. [fai_load] fail to open FASTA file. [fai_fetch] Warning - Reference %s not found in FASTA file, returning empty sequence Usage: faidx [ [...]]  5a 0`   0 ` Y0`p= ף??M$int^^1  W BW W ^ 16  W# }# }# }# }# }#( }#0 }#8 }#@ }#H !}#P "}#X $A#` &G#h (W#p ,W#t .e#x 24# 3I# 4M# 8]# Ap# J{# K{# L{# M{# N# PW# Rc#  A A# G# W# 6]BsB 1- 4; 8B ( %rz&X #n'W#m'W# (^ #)d #j;yz [ # #len # # (#### ### [fH-J;KBQZ{P5;UQ`fw pUHVH#W#X#ZH#[# \#(msg^}#0_k#8a*#@bU#Hc#PeW#Xf#`g#h k W#Nhwq PpDqW#r#sW#ostW#uH#v# w#$xH#(y#0zH#8{#@|W#D}W#HD ]W#fdW##}#}#W# ]#$W#4W#8W#<W#@}#H}#P}#X #`!#h$}#p$}#xWmB%UCD#E#FW#capGW#~HxTfprUfpwVWm OG P#QW#xW#[|#\G #in]# out]#(end]#0]#8`W#@a#Ha#Pa#Xd{#`d{#heW#pfO#xhW#hW#iW#iW#jW#lW#nM }P sPhR h keyincki    !M{9 "M{"MW"M hd keyretxincki    !`W "` "`#+$d !}2 __s}__nW" %I hd ! 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[sam_header_line_parse] multiple tabs on line [%s] (%d) The tag '%c%c' present (at least) twice on line [%s] [nextline] Insufficient memory! [sam_header_lookup_table] They key %s not unique. [sam_header_compare_lines] Unknown type [%c%c] Conflicting lines, cannot merge the headers.  5a 0`   0 ` Y0`p= ף??"8intii1mb##### #(#0#8#@ #H!#P"#X$ #`&#h(b#p,b#t.p#x2F#3T#4#8'#A{#J#K#L#M#N-#Pb#R-# (x  8   M# M# # #     # # b# ' 8 = 8CPmbmjMynzy=(   y#  y#  y#  y#  #  #  # n=   Z  Z# Z# ###`key# #  8v # #` ,,2key=tag,`bc`c`=fpc2tag, PysP=hRy y6h 6key inc yk yi y y - -<}bv}c~=~v111g1-MMMbM-!nnlp b3__s  =KdKKlM" p yh pkey ret Sx yinc yk yi y y y - -! h p|bGtag|=|~b#6$6=%ap8H~&A:'j'_(T)Z $Z$Z*l\+!2 ,! -#.out$2/.old,,.new., 09 ,2-1 .tag,2'/3), $=$=$=*tag,*lenb4i? 'w3358 'K6V 28'K'V4} 6%U3;60 7 ,- -2'/3k8 | ,| .out /-2 k8 ,g-| .out.lenb-b- 1e -2-/.tag,/-!2-%5# '&'/.tag(,9+'&'` S2qS=U2tagV,W=toW=kb=n=lenbto=-86t,6=-8:92]-:=.buf;-<-;=b5qC'''<335EA')<353A3M3Y3d2'/3<393H(O'D<3Z! h p y j y=t ykey val =inc yk yi y=tmp tmp =8V,Vg,V,V,V-X| .lY >tblZp\k[.ret\b?dZ<-a2>keyh,S:h,^5i?'<3<35j6<3<35qU''9V''<3@R33A 6'/3/BB(9vt'''<3Ct ''<33D3<33<B@R3A V'/31u3/3Ct ''<33D3<33<B@R3A X'/31w3/3<3B333C '<3/BB8|7,|g,|,|E_n|S-~| .l .maxb.nb.ret<-2>key,\2'/3<38r,F=T,=,=FXFY.l<-2>key,U:,[56'<3<39'<@Z<38=EhEkey=.tblpky9''2''/3@R33C '<3/BB(GbwEh>tblpU7DEh.tblp9' b22t1,t2,bbb=--=--=---- 9bn929 ;C,D,tagG,8PEnb,P:V- -bb<- <--b5D'`'U<3k3u333C'<3<3A'/3<312BBCq'<3<3A'/3<31BB5  '<3<3H p'/3<31BB<BB2'-'!<39<3F@RQ5D/'<3<3/3_g| 8 ,g,=,EnS-b.out.l .ib-b<-2<>key,U2'/3<3 n 8I}  J p= ף? KKK =! 8L"   =*! 8L#!  =P! 8L%@! L&  L'!  =! 8 L)! L*! L+! 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I *? I    p + p + p H L Q p * 0 * 0 Q AQ AQ A * = Q A * = Q A ] 6S ] 6S ] 6xSx|] b E6tS] b E6tS] b ES+6P6b * = tb y = b y =  g049N/@/@HLQ/@HLQ/HLQ}HLQ}HLQdi}(( #'GHP&P &PPdpPdpdqdq 04=P04=O p ]ah /usr/include/x86_64-linux-gnu/bits/usr/lib/gcc/x86_64-linux-gnu/4.6/include/usr/includesam_header.cstdio2.hstring3.hkhash.hstddef.htypes.hstdio.hlibio.hstdarg.h 6$7<XJ0:X>XKzvX.VL>=wKLZHKYsYvJ XJuKZKE_}XuTX-=-}gWgHx8/u~X<~<f~JXh,}.XA}J}Jȃ}J%wJ X}.}.p S0H:0sY:kf~VL.!=[:M[ X8/.{J2FZK=;m<}b=Li;J|<X~z~<X~sX|1<0~Yi].{XX{tX{gJ[K{JFZK|^z.ZH[FK{J{J<{X}z<<}}HB{m=}d<X=}M<Xy=}M{#4z.zz<;giJZKt{JFZK\iJ>w "0:v<rJZKX{JFZK |l*H[FZKO)=NF=Mu|t*z.z<J}(=}.d}Pz.t=iz< z<z k77]hx<xX`x< Z{JfE ZcX\xf&{{Jh<z.FKJ{J\FZK#9Y{lt XO)OWJz.FK+FK2LvJ,2{Jz.FK.{JxFK֒LsJ"|JK|tJFZKtJ|JJLH=YIKtJ.[J^?t l wKL,"ai .:bPi UEKc$sX{JFZKzJ XIm<vvl.lastprint_header_line_shortbufout_tagfrom_IO_lock_tmissinggp_offsetsam_header_freestderrformato_hd_tags_IO_buf_endflagssam_header_compare_linesupper_boundheaderLine_IO_write_endunsigned intnext_flagsout_dict_markerso_sq_tagslist_freenextlineHeaderDictsitekh_str_tsam_header_line_clone/woldlab/castor/data00/home/georgi/programs/samtools-0.1.19tmpl_hlines_postag_existsstdout_IO_save_endtovalidatevalsu_rg_tagssam_header2tbl_nnew_flags__lenr_pg_tagskhiter_tstdinoverflow_arg_arealong long unsigned intn_occupiedr_rg_tagsu_sq_tags_IO_backup_base_offsetsam_header2key_val__destvalue_filenokh_get_strsam_header2listidictvalue_tag__gnuc_va_listlineptrlist_append_to_endsize_t__ac_HASH_UPPERsam_header_clone_IO_read_basesam_header.cnew_tagsam_header_line_free_nextkhint_to_pg_tags__fmtkh_resize_strtypes_value__stream__s1_lencharkeys_mode_IO_markertext_IO_read_ptrkey_tagdatatmpl_hlineHeaderTagHeaderLineva_list_IO_write_basesam_header2tblout_hlineslong long int__s2_len_IO_save_baseheaderdict__ap_headersam_header_mergememset__ac_X31_hash_stringn_bucketssize_key__pad1__pad2__pad3__pad4__pad5tmpl_tagsheader_line_has_tag_vtable_offsetvalue_tosam_header_line_merge_withitagsam_tbl_getsprintfout_hlinenew_n_bucketskh_destroy_str__chroothline1hline2_IO_read_enddictsshort intnbuflong intsam_header_parse2kh_cstr_tstatus_dictssam_tbl_destroyhlines__va_list_tagfprintftagsitypehlinefp_offset__ac_prime_listnamelist_appenddebugheaderText_locklong unsigned int_old_offset_dict_IO_FILEreg_save_areakhint32_tsam_header_line_parseGNU C 4.6.3required_tagstmpl_tagtypeunsigned charsam_header_write_sbufinserted__src_IO_write_ptrnoutoptional_tagsntagsvfprintfiter__off_tr_hd_tagssigned charshort unsigned intmemcpykh_init_stro_rg_tagsdouble_chainkh_put_strFILE_flags2unique_tagslist_t_cur_columnvalue_fromr_sq_tags__off64_t_unused2_IO_buf_basesam_tbl_size_HeaderListGCC: (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3zRx G,8bBGA @ ABA 4hBBA A(L0}(D ABB(]BDA KAE MX0n(BOA jAJOHz F F$<HADD |AA$d:ACG iDAHnBEB B(A0A8D@= 8D0A(B BBBA H*BBB B(A0A8D` 8A0A(B BBBH H$ BJB J(A0A8D 8D0A(B BBBG HpBGB E(A0A8GP 8A0A(B BBBA DBHA A(m  ABBB B  AIBR $RYNPk F , @2Dd H AH`EBBB E(A0A8F 8D0A(B BBBI LNBBB B(A0A8G` 8A0A(B BBBK .symtab.strtab.shstrtab.rela.text.rela.data.bss.rodata.str1.1.rodata.str1.8.rodata.rodata.cst8.rela.debug_info.debug_abbrev.rela.debug_loc.rela.debug_aranges.debug_ranges.rela.debug_line.debug_str.comment.note.GNU-stack.rela.eh_frame @80 +@8 &h1x!62x!`E2!T# \ $n0$"i@E zF'JT) ڟ0+0 l+00+ + xb  6]K SlPO     0H:0n#*8@*R@0`0nv R  2`E0N (2<0FP Z(d@`nsam_header.cdebuglist_appendsam_header_line_clonesam_header_line_freenew_tagprint_header_line.isra.1tag_exists.constprop.3__ac_prime_list.LC10.LC11stderr__vfprintf_chkmalloc__strdupfreememcpy__fprintf_chkfputcfputstypessam_header_freesam_header_clonesam_header_writestrlen__sprintf_chksprintfsam_header_parse2required_tagsoptional_tagsreallocsam_header2tblcallocstrcmpmemsetsam_header2listsam_header2key_valsam_tbl_getsam_tbl_sizesam_tbl_destroysam_header_mergeunique_tagssam_header2tbl_nu_sq_tagsu_rg_tagsr_hd_tagsr_sq_tagsr_rg_tagsr_pg_tagso_hd_tagso_sq_tagso_rg_tagso_pg_tagsi3j !!!Lu" #$ "#.%S&x &!q* + .+B G,?"C . A!d /  0'!  '$ 0M c r !   2 , @ H  33` l 4Oc40'06! 0+0A0i000`3.!7!@!(o ;)<Q ~3 .b3 /a3"=  /3t / hN0!H$I!=>@?H@PAXBCDEF      ! $ '  !0 !@ *H -P 0X 3` 6h 9p x < ? B E H H K N Q T W $  Z( ]     :!) . ; -B I 7P W +^ kl zq |    Q   X     & s5 $D BS b q n z  ?    ' R    - = M ] n   A   Z .  7  I \  c  o hz =   x  #     $ 0 > L a l   t       : L pW Oj    c   y) C  U p` Ok >~ J m   \ m @   E  ' O4 E EP e Qw u   y  1 1 < H OW_ h br Mf       E    m $    ' 2 7 B R 4W `_ s }  "             = % 2 : E  M U ^ h 1m w g|      L ?  $ Z  0      20  9  D PL T ) h  s & K    C ] 2 ]          ! ) *1 6 : 9E  U  Z b k v R  0  v C  2 $    b   P # . 03 > TC hK _ f n iw      ` E q  R       r* 6 N )e r      0       # 3 8 uC lH Ya q z  + 0  R     t   e e* / p8 FN _ Id m u U #   $, 5 K@  E P . U ` d e p  u 9    ! !   @  ! t+   R"! * "/ 8 "D L 0a pj 6#o x #   $ e$Q  P $ 4%  % % H&Q   &Q # 0 &7 ?Z b n +'w ' (  k(  p ) *  J* *  .+ @ e+ + p @,#06 ,;C0P ,W_p V-v~ z-]   - @.  . .  X/  / /   }0P%8 0=PER ,Yar 1x 51 @  1  2 2 n3b    3   .4   #+3 4< KG 5L W 5\ g H6v k6{ 9 5 6 6 Z7 7    8!N M8 !N  8% @ . 89 ZEMU -9^ i i:n |  :  :  i 1; p   ; t   <  ! I<& ` / <;HC  O <T  `  i =t  = = E> = 0  E> = > >!)6  ?F G?O ?X`  o ?t  } $@Md  @  R @ *A! *A* 2  > *AE V Ja Q  9  y  y  y  y  " . : G S !p K|` A B  !C e  YC  C    v C P   mD $ AE-5  E eEN mFS  \ Fe Fn Fw ! E!F! "B!" c."&G" T"/]" j".s" ";  X  777>'Z'v'>'Z'v'')-H;H;I;  <l   P@h0( t0D d`bam_reheader.o/ 1371478029 1028 1024 100644 13296 ` ELF>@@AUIATAUHSHGHHDLHIu E9}YfIL$0HcоHH}0HHE LAD$ 1H[]A\A])HcHuLHcLff.Ld$H\$IHl$Ht5H 2H$Hl$Ld$HfH~HHHHHI|$?-t>HHH=HHH1{uH=HDMD$H=1'@MD$wr[%s] fail to open file %s. Usage: samtools reheader [%s] fail to read the header from %s. main_reheader8intii1mb##### #(#0#8#@ #H!#P"#X$#`&#h(b#p,b#t.p#x2F#3T#4#8#A{#J#K#L#M#N-#Pb#R#   # # b#t  8m  8bi1?4M@ , -b# -b# -b# .b# /b# /b# 0# 1# 1# 2#(fp 3#0mt 4#8 5"@ Wr X# Yr# Zx# [# [# [#( \#0 \#4 ]#8 ^  7`b`` b^in h ^fd bfp old ilen bbufd~~%b%b%rh'iin(  fph.0 !"6-#6-$#6#6b%8&    8 ?'''% : ; I$ > $ >   I : ; : ;I8 : ;  : ;  : ; I8 I !I/ &I : ;  : ; I 8  : ; I8 : ;I< .? : ; ' I 4 : ; I.? : ; ' I@: ; I4: ; I4: ; I: ; I4I4   U1X Y 1 1! "4: ; I#4: ; I$ %1RUX Y &1 '4: ; I? < w w ww w(w0w(w wwww0'U'VV+T+]]+Q+M\MQPQ\\^tPP26P6SSw-w -0w0 w U.4U T )\.8T8 \SWPWV VoS S?LPLoSSP X1 1]k|U|]b|8$8%- u8$8%|#8$8%, 0X  /usr/include/x86_64-linux-gnu/bits/usr/lib/gcc/x86_64-linux-gnu/4.6/include/usr/include/usr/include/x86_64-linux-gnu/sysbam_reheader.cstdio2.hstddef.htypes.hstdio.hlibio.htypes.hstdint.hbgzf.hbam.h  3S;=Ye=YIPu;Y/r=J[9XIXpJ;=j;=Zɔytf,"W")BGZF_old_offset_vtable_offset__s1_lentextrg2lib_IO_save_endshort intsize_t_offsetbam_reheaderuncompressed_blockblock_address__s2_len_IO_write_ptr_flagscompress_levelcache_size_IO_buf_base__s1_markers_IO_read_endbam_header_tblock_offset__tamFile_tuint8_ttamFilen_textl_textuint32_tblock_lengthdictlong long int_locklong int_cur_column_posfprintfargv_sbuf_IO_FILEunsigned char__func__argcsigned charlong long unsigned int/woldlab/castor/data00/home/georgi/programs/samtools-0.1.19_IO_marker_shortbuf__result_IO_write_base_unused2_IO_read_ptrcache_IO_buf_endcharint32_tmain_reheader_next__pad1__pad2__pad3__pad4__pad5short unsigned int__fmtlong unsigned int_IO_write_endbam_reheader.c__off64_tint64_t__off_t_chain_IO_backup_basestdin_flags2_mode_IO_read_basetarget_lenn_targetsGNU C 4.6.3_IO_save_baseerrcode_filenoFILEunsigned int__streamstderrcompressed_blockstdout_IO_lock_thashis_writetarget_nameGCC: (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3zRx 8BJD D(D0 (A ABBA X)MI w C .symtab.strtab.shstrtab.rela.text.data.bss.rodata.str1.1.rodata.str1.8.rodata.rela.debug_info.debug_abbrev.rela.debug_loc.rela.debug_aranges.debug_ranges.rela.debug_line.debug_str.comment.note.GNU-stack.rela.eh_frame @ $&L,L12L @2p_O\W0'0 h { zv`3 A0x30 q`30c0B+mpx30X #   +2BM^eot)bam_reheader.c__func__.4912bam_reheadermallocbam_header_readbgzf_dopenbam_header_writefwriteknet_readfreebgzf_closebgzf_writebgzf_flushmain_reheaderstderrsam_opensam_header_readsam_closebgzf_openstdoutfilenostdin__fprintf_chk(3; @Nq  5 I!T"c h#{$%&%   8'   V  ! ) . L; B I P W ^ Bl \q |  b    C  3 +   & V5 bD S 5b q  x %  e   V S    - = M -] :n u   }  q H g     -+ p< M ^ l 6z  { h  P  L  A C, : .H &V d )    v   [   I" 0 J Y Gq o|     ~ &      ]!X)b6  A K PXXba k p "z  0   p8  \kprobaln.o/ 1371478029 1028 1024 100644 27352 ` ELF>pK@@AWAVAUMATMUSHhH$H$$  1H$1H$!AA9$L9OЉ)ȉ1)ȋ$9MЃ$LcA׉$L$ A$HHDŽ$G|$L$L$E1$McD$L$IE9|1LJDtLKDIE9}ϋ$$L$L$HcLc$H$LL$WH$. H$$1f.MtAHcҋH9܋$ DD$fE(DŽ$**AD(9$AeHE\fA(L$D@DMø+$L$H$EZLML$ZL$D^ȉ$@AED\DD$Ht$HIT01A(\D^ZA\f(^E5ZYEZYYZYD$(fEWfD($0D%DYD$(A Ht$D$w#A;@wA$@8Z AYfAYHDZHAXHA9DX}H$D+$DP+$GD@AH@93)HDIH 1fDA^HH9u胼$$$AD+$DD$L|$D-E1H$H$$H$H$D$EAH$H$EOJDED9$DN$FdH$JDH$EZE9B\"H$A$$DEEIMc˃L$H$HJLD)fEWۍ4vMEE)HcMEHDA)D)DGD@D@D)<McHI)H$HcHDH+$$$f.@@8fE(EYHDRYDYAXDRDYAXAYFFtHDYDYEXDYDPDDtX@DYDYEXAXDPHL9DXtJ1@=L|$Dt$H@fE(E\5fEWEAEIE)E)H$G\[GtvfE(E9F\E^:H$E)McJ1J fDAYHH9uIAL;$RH$$L$1$D$fEWҺILGD@L$H+$D$$I$@D`HH0H$HD~(A9~#H7D\AYEYAXDXЃH9}H$L$E1D$X$\IHDŽ$fA(N|D$H$$ E$DD$Lt$D$8$@$H$P @ID9|oBYDfD.vt$ IDD$D$YD9Lt$D$DD$t$ X$$D$}$\D$$L$D$XD*$8$@$H$PL$p$\$`d$@l$Pt$ DY*$|$0DD$D$DYfA(YL$p$\$`d$@l$PX$t$ |$0DD$D$X,$$GH$H$H$HH$H$$$DA~D9~fA(^A^BAH9}ϋ$H$$HLL$D$D5E1HH$L$ME1H$L$H$H$H$$H$fEWJ JDH$t DL$H$AWG$(AFlDO‹$$EZ9NE1A9EEEHcEIυDUDIH$D)H$|fD(fD(H$8DHcD)HTAD)DYGLID@DYH$8McHI)DH$D)HD|HcH+$@AE8fE(EYFYLf(D:HEYAYAXD fKD bKD sKJ mKP sIKsMKbIKbMKpbKL` L` refM( M( bwN?bw2N?iN?kN?N?N?PrN?fisJ sumsbegt?endt?t?t?fuv?ew}x~?x~?fiJ fi1J sumqlibeg?end?x???qyiju?v11?v01?v10?ex?x?sumu?pPr1u?biJ 6beg?end?x???biJ bi1J yu?v11?v01?v10?ex?x?beg?end?sumu?esumfiJ biJ maxbeg?end?x??u?z. 9 -J  ` 8 v 8(f  ,-  -- % : ; I$ > $ >  I  : ; : ;I8 : ;  : ;  : ; I8 I !I/  : ;  : ; I8 .? : ; ' I@: ; I: ; I: ; I : ; I 4: ; I4: ; I4: ; I U U4: ; I  &I4: ; I 4: ; I? < 4: ; I?  www w w(w0w8 w w8 w0 w( w w w wwU~8T8S ~ S ~SBQB~R~X\ ~ X ~\Y] ~ Y ~]PV]~F VVPV0 ~ 0 ~0PP ~ ~)cbbf(F ~~~( ~~~( ~~~(cbbf(~~~(jF ~ ~ ~j~MeaeF   :?k?F   F ~4 ~4 ~4P ~ ~ku ~1 ~1k ~1 ~1pQQ ~ ~_ ~# ~#_0002p0 @ ~1@ F ~ ~~1q~Me1P[[[]1Q P l Vl F R V3dXT3G\U\mq7QqR 0 0q0k1kmQm ~ 1 ~D K PK F ~ ~ ~~Mv]~#YMe k~#MF 1 1 1MXXPRaF ~ ~ ~~F ~ ~ ~~< |3$~"#<] |3$~"#< |3$~"#<] |3$~"# l ]k]m1[~^@ ~1$z"@] ~1$z"18[< ~|"#<]|~".o]]] kp ?aa( . ?. 0 |0 ap ~( . a. ~ 9 a F ~~"  ~~"q ~~" ~~"@ 1 F X XqX@  F V VqV V3X37 v1$v"#n F }3$~" R~q~n F }3$~"# P }3$~"# }3$~"#q }3$~"#y F k EkEjqk F n nqn F ~}" \q\l r~#3  r~#3 F r~#3q r~#3l r~#3  r~#3 F r~#3q r~#3 j^3^q11+ chwam ba |3$v"# |3$~"#m bcacc;1;\U\mqGSGT2;Pm RR{ba,$)4>BFMq :DM0or`eMV[or`eELZou`e@vZowwz|]v&8Nkp]v&8Nkpt     ( 0 F x   (     % * 3 > @ F N Q X  F MOx.3WY0WY  /usr/lib/gcc/x86_64-linux-gnu/4.6/include/usr/include/x86_64-linux-gnu/bits/usr/includekprobaln.cstddef.htypes.hlibio.hstdint.hkprobaln.hstdio.h z.ldv1Uo]7w0:LYsq<pp<HY-Y.V\.Ƅ;XM u Xu2F JvJ JwtlzJIYBt <zXDNt <r XTt"<^/.Q"ULG?Qy9wHIM:LWyX [" vYIOf1<KAS6gKIJ7wFJt;E>GEX?<>O9i@@t<@@<@XkMG-HWWgxJDxX1" evt"tlsYt2XY#4^z^LYut(>40/fYa v<ft9J-YdvJMYf<fJJXX=.uy$zPWyt<e <c.'/<~# ~f~nt~t~tJ*~<X~XX< Y/ `~A7~tJ~̈́~<xP| KxX\Njz80uxj0  9@j0F0I+"J(JhjJpQ Tw     "', 1(60;@KRVZ_ k kprobaln.cg_qual2prob.LC1.LC4.LC5.LC6.LC7.LC8.LC9.LC3kpa_glocalcalloclogpowfreekpa_par_altkpa_par_def2H Rk  5  u = _ m r      FS`   ;!) . '; 4I wV ] d k !r y ~ s T  $  L  o   > F  S/ > M {\ k fz l ^       .  & 6 F V f w  ~     |  . : EMU ^ h Rm w |   6 H    f  #     ) s7 F P 7U `_ n s } 6 x  B         A      ^ $ ) 3 8 B G a &g x I~   P  [   6 m     % * e Xk | { {   @   t    0 ? L :Q [ ]` j x       P P    ` 0 7 J d @i   p    L  # Y  |p ! w          bam_cat.o/ 1371478029 1028 1024 100644 20328 ` ELF>*@@AWAVAUATUHSHHhdH%(HD$X19-|$$HT$(Jy@H=HD$H|$OH|$(tHt$(H|$L$$HÅHl$D$ HT$H:?-H=HHEHT$ HD$Pu E9HD$E1Lx0\@ELd$0McLLLK44LD)LcLK<,LHAH}0HA~xA~ELd$0uHAHIcHHI $HHIL$HHIL$@LAD$f.LLf|$1Ld$0D$Hu |$0utUHT$H=1LH LLH|$HD$ HD$D$$9D$ HH|$1IHfDHT$LH=1HT$XdH3%(Hh[]A\A]A^A_)HcHuH|$HcH|$H|$(H|$Hf.HHD$HD$LDRH=Iع1(fAVE1AUAATIUS1DLDxThtouH=IfH=HHtdHHHDL)ǃ~gMHLDI4HLH[]A\A]A^MD$H=1[]A\A]A^H Kwr Possible output corruption. -h:o:[%s] ERROR: fail to open output file '%s'. [%s] ERROR: fail to open file '%s'. [%s] ERROR: truncated file?: '%s'. [%s] WARNING: Unexpected block structure in file '%s'.[%s] ERROR: fail to read the header from '%s'. Usage: samtools cat [-h header.sam] [-o out.bam] [...] bam_catmain_cat^ 8intii1mb##### #(#0#8#@ #H!#P"#X$#`&#h(b#p,b#t.p#x2F#3T#4#8#A{#J#K#L#M#N-#Pb#R#   # # b#t  8m  8bi  8" 1? 4M@ , -b# -b# -b# .b# /b# /b# 0# 1# 1# 2#(fp 3#0mt 4#8 59b@ W X# Y# Z# [# [# [#( \.#0 \.#4 ]#8. ^# 7`b``1)111-JbnfnJbfnJhJ JfpLMbufNOesPiQb$  3!S-"S-#S)Sb in\old]4len^bj^b$!`-`-%`)`b Gxb&~ '''(z')$::?(')(b')(U') #$ 8 /?#.b bh4cbretb  #fph*')  8 ++++ ;+ Ib% : ; I$ > $ >   I : ; : ;I8 : ;  : ;  : ; I8 I !I/ &I& : ;  : ; I 8  : ; I8 : ;I< .? : ; ' I 4 : ; I.? : ; ' I@: ; I: ; I4: ; I4: ; I4: ; I 4: ; I 4I4  U!4: ; I"4: ; I # U$ % &1RUX Y '1(1X Y )1*1RUX Y +4: ; I? < wwww  w( w0 w8"w"#w8#$w0$&w(&(w (*w*,w,0w0wGUGKTKV~ ~-v~vTV~VKQK6RKSvRSS]v~~"$~#0$__P S-vSS0$KRKSvRSS$6r8$8%-6K r8$8%V V-vVVP~~-v~$KPKc]cz^P}d]P]P$0$9^^^1 1-v11~U~8$8%-~#8$8%$KLpKcL}czL~Lpcz]cjTjz|~"cz\ O|OO+   wwww w(w0w(w wwww0w(w www w0U]] ]T\\ \0bSbfPfSSS05^7^V^ V1P7KPivPPSR[P[iVPV , $'06$'06 0(z UX[`ckoz@p /usr/include/x86_64-linux-gnu/bits/usr/lib/gcc/x86_64-linux-gnu/4.6/include/usr/include/usr/include/x86_64-linux-gnu/sysbam_cat.cstring3.hstdio2.hstddef.htypes.hstdio.hlibio.htypes.hstdint.hbgzf.hbam.hgetopt.h <x<fI=OIYV>Km^J<<X<Jnfy fLt<X WTJ/@MF<Gv%XQ&Ykfit0:w= w;=2;=YqS Cb q 7  T    N  a    - = M \] zn u C    n  " $ '/ MB S d u  V  | i    { , p: iH V 7d >r 7 2  /        c+ E6>F Y Rg t My |    . | 2     )  0  # X- 4 `F U )d q Hv~ )     X >  > U    " ]%-< HP] g l v {  +k /  [  F QY a j t + y     f   2    0 h  ` ! 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