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Abort! [sam_read1] reference '%s' is recognized as '*'. 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J<2K~=I($~X<~JJ.<X=JX,u<|.x}<<}g| IKɑfH!!}2~&gG^}XYI({=I(Ys(BJ~KI*} ~X~<.=Y~J<~JXH>}}XJ}X~<.=Y~X^==}T=df<X}f)}~KI*~=Ks*<>fv>.}dv X=J=;.~...a..~~< .V*,.}.^0uW=|K|<X|JJyt ;=/|JXY>Ԓkhint_tatoll_ISgraphdofftamFilesize_t_shortbufisize_ISspacemposkh_init_reftypestrncpy_IO_buf_basen_occupiedlong long unsigned intvoidpdata__src_ISalphakh_cstr_tbam_header_talloc_data_ISdigit__tamFile_tint16_tlong long intsigned charn_lines__off_tdoff0qualbam_nt16_tablekhint32_t_filenonew_flagsks_getuntil_IO_read_endint64_tis_firstlong int_IScntrl_flags__s2_lenks_init_ISalnum__ac_prime_listn_cigaruint16_tl_textis_eofbam1_tbam_aux_type2size__resultsam_open_ISblankkh_resize_refm_data__pad1new_n_buckets__pad2_ISpuncttarget_nameappend_textbam1_core_t_IO_markerstdinunsigned intbeginfprintf__streamlong unsigned intbam_nt16_rev_table_IO_write_ptrhash2headerdret_sbuftarget_lensizeshort unsigned intbam_reg2bin__kstream_tlast_IO_save_basekstring_tupper_boundstrcpy_lock_modestdoutsam_closeappendsam_read1ks_getcn_textl_qnamesam_header_read_offsetmtidkh_ref_tl_qseq_IO_read_ptrBsizeuint64_t__dest_IO_lock_t_IO_FILE__kstring_tsam_header_read2/woldlab/castor/data00/home/georgi/programs/samtools-0.1.18__s1_len__nptrn_bucketsrg2libsite_poserror__res_markersatofatoiint32_tunsigned char__bam_get_lines_IO_buf_endkhiter_tshort int_chain_flags2flagvals_vtable_offsetdata_lenFILEcoregzfpgzFiledoubleuint32_tdictkstream_t__ch__s1GNU C 4.6.3parse_errorchartextn_targets_ISxdigit_ISlower__ac_X31_hash_string_next__off64_t_cur_column_IO_read_basememcpy_IO_save_endhash__fmtkh_put_refint8_tbam_char2flag_table__pad3__pad4__pad5delimiter_IO_write_end_unused2stderrmemsetsam_header_parse_ISupperuint8_t_IO_backup_base__ac_HASH_UPPERflagsbam_import.cks_destroyks_getuntil2__len_old_offsetkeyslistl_aux_IO_write_basekh_destroy_ref_ISprintheaderGCC: (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3zRx 'DH0BEB B(D0C8GPS 8A0A(B BBBJ H|BBB B(A0A8D`O 8D0A(B BBBF LB BBB B(A0A8Gr 8D0A(B BBBA L]BBB A(A0a (A BBBH  (A BBBE @hBDB D(A0DP| 0D(A BBBA LBBB B(A0A8J 8D0A(B BBBF S  C wN Q I N.symtab.strtab.shstrtab.rela.text.rela.data.bss.rodata.str1.1.rodata.str1.8.rodata.rodata.cst8.rela.debug_info.debug_abbrev.rela.debug_loc.rela.debug_aranges.debug_ranges.rela.debug_line.debug_str.comment.note.GNU-stack.rela.eh_frame @7* 20+*  &PD1-62-E2.jT1 \1n1"ihDC z`TOXN  080- P h0 0$+OP@!)` /*'03    C H MTbhov B  0]AQc`s{@  ( )wbam_import.cparse_errorks_getuntil2.constprop.2__ac_prime_list.LC2.LC3stderr__fprintf_chkabortgzreadmemcpy__ctype_b_locrealloccalloc__bam_get_linesstdinfilenogzdopenmallocstrcpyfreegzclosegzopen64sam_header_read2__strdupstrtolstrcmpmemsetbam_header_initbam_init_header_hashsam_header_parsesam_header2listsam_header_parse2sam_header_readstrncpysam_read1strlenbam_get_tid__ctype_toupper_locbam_calendbam_char2flag_tablebam_cigar2qlenbam_nt16_tablestrtollstrtodfwriteexitsam_opensam_closebam_nt16_rev_table  #KS I!N"S Z#o$% L&T&]'f&n& (!" #%;$M*+  !),  $ -   &  0 G &O &Y 'g &q &|    .  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A 9A pLT c  h q  |`t    e    J  `   a  )1 @ JR a j s ]x        e   K P    e p ) . 6p C J W {] f tB|    R `    [     u     - 4 @A  G pP -Z c wq -z  1F      P    bA # 2 <y D W f n&   &   6   m& [   Z]  E!$ !1 ": B M "U ``h=p " $   I$ $ 0 $ ` 8% % &! &* &3 ''=E T K'Y b 'k *(t| (8h ( A) w)  / v:@B(J )\ *a k %+x ]+ +  +  1  R3 4 >7 7 |8   I; @  & ;4 ;=E  Q U<Z ~>c L?l ?w   :B cD 1E EOb H "J K K   ,N /P 6Q( Q. 0 @ `TN  U\ Vk JVy V {W XY _Z Zu 0  c]?R  ]  ` # 7^, ^6>R _[ _e"m"} :_ex f_ ` a )c   T  e   N [f  f" @ 2 f; :hD giM jW_ p o lx m  o \p& ?r   cr r2E s >u  ~v w  % T1 < yA  F NQ {V a 9{lrt { } c~    T  q   N Ղ  E P , T8 C HPY Nd 8i t n!(  Xo څ 4 a    U  # 3 Y9  K P g ڐl w  P    P b       ` ܕ ' ,!4!= H U] m 6s 0m  l  5$% ]W# 0 g#" `2 <#D T ^#f r G} o  ۘ ! T  6! N n  ! A) `=  L 8T Ph 6r Pz \ Y   |  ( )   ! 5! ! k!!))! )6! TB! O!)W! )`! Nk! p! {! !Y)! ! ۛ! P! ! e!)!7*! 4! !)!)! "  " ." G" sT" ^a" L~" "<" "C" ": w w w  u0(M_ `p V 40 l`@($)sam.o/ 1364299897 1028 1024 100644 29032 ` ELF>=@@AV1AUATUHSHHEHHEHCHEHCHEHCHE HC HE(HC(Le0Lc0HE8I|$HC8HE@HC(HCHC HC@HC@Hu@LHD+McLHCLIEHC~?E1 DLcHCHUBCN$HEJ<I$AEI9H[]A\A]A^ffffff.H\$Hl$HLd$Lt$Ll$IH8IrHHHD+bHDHqAD+A<$-tKLHHCHHCHHl$H\$Ld$ Ll$(Lt$0H8@A|$uH=fDwHHtLbHCHHLEAt4PЀ HDHH BuAuHH$wA0 Dl$A<$-D$rA|$fH=HHHCHsHfLHHCkHHHCMLHIHC1Lm@Lu0HH0MʉD ʉ Љ ‰ Љ  Ɖ Љ ‰ Љ ƒ96ID$@McH<LLMt$0ID$@Mt$0B0HHC0 H &fDHL=vH=1YfDDh @H14A<$-LHHCtϾXHHF hHH1IHCLHP0H@@IU0IE@HCIE0IE@HKHP0Hx@AEHC1E1~;DHPH@H{AH hD*1HHCD9 L0DAE1A|$HHS;t~H KI|$@HcIL$0ID$@xHH A0rfff.HSHtWHHtH{u/uH[DH[f.H[f[fffff.Ht3t-uHGHHHfDHfH\$Hl$HLd$HHuaHHHHsHIHs HAD$H$Hl$Ld$Hf.HH$Hl$Ld$HDfAVIAUATIU8SHLLIHI LLHLy1LMtI}0L[]A\A]1A^fDH\$Hl$1Ld$HHHtOHxHHHIHIľHA$.faiAD$tHHl$H$Ld$HfDHtf==HuH (H1fH "H=H1Lrw@SQ SN:%s LN:%d [samopen] no @SQ lines in the header. [samopen] SAM header is present: %d sequences. [samopen] inconsistent number of target sequences. Output the text header. [samfaipath] fail to read file %s. [samfaipath] build FASTA index... [samfaipath] fail to build FASTA index. 38intSX{{X&t'F){1_4f1  F# # # # # #( #0 #8 #@  #H !#P "#X $#` &#h (F#p ,F#t .#x 2?# 3m# 4# 8# A# J# K# L# M# N-# PF# R$#   # # F#X8X48 < F#fd F# # # # F# <#$ F#4 F#8 F#< F#@ #H #P #X #` !#h $#p $#xFL8 %4 )vfpr *vfpw +|LX $[ %F# &X# '# '#x ,W# 0F# 1F# 2# 3#( 4#0 5F#8 6F#< 7F#@ 8M#H 9#P : 6q[H W X# Y# Z# [# [# [#( \-#0 \-#8 ]#@ ^w tid #pos #bin # # # #  # # # # # 8 ! # F# F#$ F#( !#0  '>D b # # F# F# # # # #aux #' J   !$FHFHN # $# %# &# 'S'  2bam f |  F#x # #  vB v vM v-!  "lenF#xF#yF1 1 1 1-`F `| `M$g g gM7  M%  &h0 'h 'i F  %' &fn'M('M&aux''fp) )n*^ +/-,/--,/ ,/F. /E @'iFF,FF0+L-,L-0,L ,LF.- ,81B ;2e 2Z 03p 3y 4 @W 2 5 * +Q-,Q--,Q ,QF0'iXF'altY1 f2 2   _X! 86sQ &fps 7}Fw &fp} &b}%F &fp &b-'s'lF%F&fp (F(('buf'retF'b%(M,8 9 5 :::; F% : ; I$ > $ >  I&I &  : ; : ;I8 : ;  : ;  : ; I8 I!I/  : ; I8  : ;  : ; I : ;  : ; I 8  : ; I 8 : ;I<  : ; : ;I8  : ;I 8  : ;I 8 ' II : ; I.? : ; ' I 4  : ; I!.: ; ' ": ; I#4: ; I$%.? : ; ' I@&: ; I'4: ; I(: ; I) : ; * +4: ; I,4: ; I- . U/4: ; I 0 U11RUX Y 2134141X Y 516.? : ; ' @7.? : ; ' I@ 81X Y 91 :4: ; I? < ;4: ;I? < www w w( w0  w(  w wwwU VP S P0PP HwHww4w MUM\E\*|\E\\ 4\ <T<V"V*@Vj|VBVV 4V TQT^W^*^ 4^`dPdSSU4S1 1\ \|8$8%- |8$8%Dc0]0w|]]+/]/4}P1*@1\*@\|8$8%- |8$8%7>P>V VWv0^ ^Wv] ][hp0#hoRovQv}P}QPtTT[q v0p0"#q v0|0"#QPQPQQMj 11 +1E\\ +\|8$8%- |8$8%<K0}\P]]K K|s@DwDnwnxwxwwwwww@IUInSnrUsSUSUSUUUUTQTTwuw uww ww UgSvSS-TvTT48P8cVCGPGc\wwww w(0w001w(13w 35w59w9:wU0ST1VQ\R9^P3\PPP5]@UwUw w` w @aUaV` V@y0y}P}S S  U  0 ` S,` D0@p+47 W W Xaetx} /usr/include/x86_64-linux-gnu/bits/usr/lib/gcc/x86_64-linux-gnu/4.6/include/usr/includesam.cstring3.hstdio2.hstddef.htypes.hstdint.hstdio.hlibio.hknetfile.hbgzf.hbam.hsam.h  1+LV7VsL$^/WK;=Y;K=sJ OhVV>Y==ut;Kg%!WKIgJXiIgg;ZVZ Y;Kge.;Kg-u;ugaL+1/;g-/IYW=tYWYX$j&t"f#'=-Yaf;K/X@\K;[HV=~GG[b '3Xv*J; =/YKY=Z=[=uXgKYZ;=Ys=/ZxRx  T @e=YW=Y=;0uX,:>/D.$MI o K V J 8BEB D(H0k(A BBD$$ LI l G .symtab.strtab.shstrtab.rela.text.data.bss.rodata.str1.1.rodata.str1.8.rela.debug_info.debug_abbrev.rela.debug_loc.rela.debug_aranges.debug_ranges.rela.debug_line.debug_str.comment.note.GNU-stack.rela.eh_frame @` HL0 & , 12 @2 !T 7OxU` s0nHp0 !/0~xp0 Q/1p04r0c;+;;Hp<D0 0J   &-4= ELVfls "*@b3:DO>Wakt@  sam.cbam_header_dupbam_header_initcallocmemcpy__strdupsamopenstrchrbgzf_openbam_header_readstdinfilenobgzf_fdopenstdoutbam_header_writesam_opensam_header_readsam_header_read2strncpybam_header_destroybam_verbosestderrfwrite__fprintf_chkfreefopen64sam_header_parsereallocsamclosefclosesam_closebgzf_closesamreadsam_read1bam_read1samwritebam_format1_corestrlenfputsfputcbam_write1sampileupbam_plbuf_initbam_plbuf_set_maskbam_plbuf_pushbam_plbuf_destroysamfaipathstrcpyaccessfai_buildQa  &7 ;!"#$ % !&7B$P%U (a'( )*,&p y'#$% X&+S#f-y./*455D6R7Z(:;<0 <=#(+(^5lz?5@@$A%  & (# %2 7 &C %K W 'o(((128    !` ) . *; 9B p[ b +i p w U~   #      ; # 2 .A <P K_ Mn j} P   I  i    \ $ 64 wD +T id pt         Y 5 wA X\ 'j x            h  e. M p      q ( ~  # [1 ? M S\ 4g    e  V  p    K \ m y~ h F 3 K E      ( }3 PE a p  _  a K w 8 _   <] l K{   1 @ X a  ]! , 7 C BP a[     , 9 [    ! , 9 D L T f s " k    4     T  /     B) 2. 6 ? I jN "X _ h ~    `  B    "   Q W     /& 2 M: pM X ` m x B     ( " q P X  > j # * @2 : L R S Y^ f  V h   :  c   : K- 72 < mA KK P Z i x E { @`      Z@ `    ) (Q   \ @(@bam_index.o/ 1364299898 1028 1024 100644 153600 ` ELF>@@AW AVAUATIUSH8w94wAI*LD$YXL,E9D$DD$ rH8[]A\A]A^A_AAAILLHHA4$9IT$DCD$DD$H$D$H$L$Hɋ t$M|$MD$ AHH9ITvHHHAHHBHH9wH$LMMLL9IHD$LH9 L9LLHFHL|$$tH|$8tKHX[]A\A]A^A_Ht$0Ht$(HD$@HT$HH9sH HHJHHHHH9wH|$8uH|$HHX[]A\A]A^A_H ffffff.AUL?HHATIJHUH9SHL`v~L^LHH4@MLL9wUHHOHHHHHOIJH9s=LL9tCMBHHMHILIM*M9rL9IvHHHHL`[]A\A]HLMM@ATIUHSHHHHtfDHLHHHu[]A\ATIIUHStEHH\>H HULHE1HMHKHMHHHCHIu[]A\fDUHoH9SszIHIIfL9sOLMH)L;Ds?IZLKfDJM9Dv!LHLLHLHHL H9H\ rIHIL9w[]U ISH1Iv6M_I*^f.L,ICIHIM)IIL9sNLHE1HHH9 s#LLHLLTLPLLAH HL9rEbZIHH^H,>H9vtIHIIL9sOLI9H)H9|v?MYLKfDJI9|v!L@LL@L@HH< H9L\ rIHIL9w[]\L,I1A LAHL H*XDAWAVAUATUHSHHHHHAv'fDHHH9wHcD$ H<@HH0H}IIIHHfDI9AHIMHL)HHHLH0H9H9H9tHHPHHOHHH7HWHMM] f.IIJIM)ODI9rHBH9@HIBIRHWIRHGHHH)LL)HHHHH9H=~M.MVEfIMj HLLI9@M9MnI~EfIHH9FsHNHVHFHHNHVHNH[]A\A]A^A_HHBH9(H90wH9LROLLLRLQLBLJHH~IR I~EfIIH=LIL(H9HLbHsL)LHHLLHL[HL9,MHMIfDL9sOLI0H)I9tv?MPLKfDJI9tv!HxH8HxHxHH4 H9LT rIHIL9wH[]A\A]A^A_fff.AVHHHL4AUL,>ATL9USLfHM9cLH)HHH?HIUHHHHH9sHHpIUHPIMHIuHMH9v IuHUHuIuHuIMHMIUHH9vHuHHH0HuHpHUHHMHuHHI\$MMH0HuH}HpHUHMILMPLL)L\I9sHHBHL)I9| wI9w/HLHrII1HrIqLZHJH}f.HrHMI9HuHrHuHzHJraLv\L9s3LeM9HEI9EsIMHUHMIMHMIEIUIHD$IFHD$HD$HT$[]A\A]A^LjAVAUATIUS~hHcA1HEuHHIDDL)H*Y,HHLHHPLLCL@H HSHL9u[]A\A]A^ffffff.AW AVAUATUSHH|$X8H$H|$XHD$@H$HljH$LcLHH$Hh~5IL$1fIn(HDHL9uLH|$XH$HD$pHDŽ$HDŽ$D$`cI~I~HL[]A\A]A^A_H[]A\A]A^A_AWHIAVAUIATUSH(5{AH|$LȉD$AVH$D$ @H$IGL$IGL4PAD$҉D$H|$LD$A$=1fID$ډɋHHIl$ ID$LH|$ȉD$EH|$LȉD$D$UH}tBDBHwHIIf.HHL9HHHHHHHHuT$LD$}t/uLHItpI~HItzIfHcLLLLuLLLH 1H EL@H\$Ld$HLl$Hl$H(IHIHLHH*HtkHHþHHIHHHLH1H\$Hl$Ld$Ll$ H(fLHxLHHHڋ H!%tDHJHDH.baiB8H .QH 2H$H /1fH~7uH~1HfHFH~H1HfH +fffff.AWAVAUATUSHHH~HHŹHHIH{HI1E1AJ=@1H5 AHE9eIEH,XIF IFHX1utD1ҍNDLM12AuHMABoHHH4H9t#1LAD$ %d-th chr [bam_index_core] the alignment is not sorted (%s): %u > %u in %d-th chr [bam_index_core] bug in BGZF/RAZF: %llx < %llx [bam_index_core] the alignment is not sorted: reads without coordinates prior to reads with coordinates. [bam_index_core] truncated file? Continue anyway. (%d) [bam_index_load] wrong magic number. [bam_index_load] attempting to download the remote index file. [download_from_remote] fail to open remote file. [download_from_remote] fail to create file in the working directory. [bam_index_load] fail to load BAM index. [bam_index_build2] fail to open the BAM file. [bam_index_build2] fail to index the BAM file. [bam_index_build2] fail to create the index file. Usage: samtools index [out.index] Usage: samtools idxstats iter->curr_off == iter->off[iter->i].vBAIftp://http://rbbamrwb[%s] fail to open BAM. [%s] fail to load the index. %s %d %llu %llu 0 0* 0 0 %llu bam_index.c 5a 0`   0 ` Y0`bam_idxstatsbam_iter_readp= ף??]_L?C&7int^^W&P'W)^1-244;8BBW B 1!  W# }# }# }# }# }#( }#0 }#8 }#@ }#H !}#P "}#X $,#` &2#h (W#p ,W#t .e#x 24# 3I# 48# 8H# Ap# J{# K{# L{# M{# N# PW# RN#  , ,# 2# W#!H B^ B f W#fd W# # }# }# W#  f#$ W#4 W#8 W#< W#@ }#H }#P }#X #` !#h $}#p $}#xWv B %^ )fpr *fpw +vX $ %W# &# '# '#x ,# 0W# 1W# 2{#  3{#( 4#0 5W#8 6W#< 7W#@ 8#H 9{#P : 6H W( X# Y(# Z.# [{# [{#  [{#( \#0 \#8 ]}#@} ^ tid #pos #bin # # # #  #  # # # # ?8 K # W#  W#$ W#( K#0  gm 0; <W#tid=W#beg=W#end=W# =W#i=W# =W# ># off?6 #(Q E BUnC#D#E #F # aagW||{Qj;y?@{#@{#AW#B/u0#v0#166 m7#n7#86 #9 ;v n<#m<#=v #>G (@ @#@#@#@# @ #@ #@ # < @   | 6 vQ v@ h@ key@inc@k@i@@  q idxq t iuWluWmuWkvpz = idx iWjW `Wh ` `!M{ M{ MW M" #{#$__n#{ x{%@ ${$ x${\} \ b\ \i^Wbeg^Wend^WbW@ h@ g} g} g} } gW g!&PW& __cPW'%Wq $beg%$end%#%q (i'W(k'W'4W $beg4$end4$b4|)6)7@^h@ @@ j@*t@key@val@< inc@k@i@*Ntmp@tmp@< + , , - - .- /- -/- -+-4.-B/-O04x1n4246 246 3a24x4a46 4b46 54W54W.4p46 4i46 4eb46 .=4i44/4p46 4j46 4k46 4ea46 4eb46 64p46 4i46 4eb46 6  B041i47n4T7l46 Q4k44tmp4044241l46 4i404241l46 4i4/4tmp484s46 t46 i46 j46 4+9U9T---041n47a46 T:4]_L?54W4gap44tmp44i46 4j46 ;4,,/---04 1n41a46 4d4W4top4 54 4rp4544s46 4t46 4i46 4j46 4k46 ;4,,/---<4V1n41arr46 1kk44low46 546 4k46 4ll46 4hh46 4mid46 .4t4.4t4.4t4.4t4.+4t4.B4t4/4t4041n41a46 4i4Wj4W64tmp4JhJ binJWbegJendJkLlM retNW@h@ key@ret@x@inc@k@i@@@< ^"1fp4b4h^"4iW4retW4idx 555553cd"~55555=~5> ?,,,,/@- -;O,C,8,//-N? @(, , /- - .- /- -/- -4-+. -B6@O? @, , /- - .{- /- -/- -4-+.-B6@O/-X-l-u-c-?$ ,E ,< ,1 /-P -Y -d 6-p ?Ũ,,,,/@- -;O,C,8,//-N? @, , /- - .l- /- -/- -4-+.@O/-B? @q, , /- - .- /- -/- -4-+.^@O/-B/-X-l-u-c-?,,,,/@- -;O,C,8,//-N? @, , /- - .- /- -/- -4-+.@O/-B? @, , /- - .:- /- -/- -4-+.@O/-B/-X-l-u-c-?ڔ,,,,/@- -;O,C,8,//-N/-X-l-u-c-?^ ,,,,/@- -;O,C,8,//-N/-X-l-u-c-?(!,,,,/@- -;O,C,8,//-N/-X-l-u-c-? ނ!/- - - - - /- ? ߽!/- -& /@0 A= !,[ BP A= ",[ BP ?= 7",[ BP C= ,[ BP 40"1idx 4k4iW/5 5 ;} , D%Eidx%EfpFiGFk.#FxH  , .%G  G  .$FxH , .$Fp /FxI P$, I v$, I $B I $B I !$B H "B .6%Jx-WH ., 6Fx1WI 3w%B H 6B 6Fx:H ;, %'A &$fpA(iCW)D(idxE )V )W (keyX)X(kY(jZW(retZW(p[ (xkWK f-E_fnFfpG}Ffn}.-Jidx w0L%,%/-&M &-&I J', , , , N Q', , , , I R', .,-%&-1&-=&-I&@U&-_&-i&-u&O \N ^(, , , , I _(, I a(, , , , Nc*,C,8,//-N? @), , /- - .)- /- -/- -4-+.)-B6@O? @*, , /- - .;*- /- -/- -4-+.*-B6@O/-X-l-u-c-N e+, , , , I f8+, N iu+, , , , P+-&I m+B H nB I s,, , , , I t;,, N wx,, , , , I y,B H b, N {,, , , , H |, .7-Fs}6FpFlWQ-$url)(fn}(fp(bufK)(lWK {.EfnFidx /G}Lf-,t-/R-----------KW/EfnSG}GFfpFidx TWw5/EfnKW|/SWS(KW1SWS(Fidx G^"Ffp Fi WU1 I= :0B[ BP .`1(kFh NQ 0,k ,b LQ ,k ,b /-w - - - I 0, N 1, N A1, L , I 1, H= ,[ BP 1 B 1KC\T4EidxC%EtidCWEbegCWEendCWGEq FiFWVFW\GFWFoffG6 (kHGI GJGK\N& T2,P ,D ,8 /-\ -f .3FnZWNQ b3,k ,b LQ C,k ,b /-w - - - .3FjkWFpl NQ j14,k ,b LQ C,k ,b /-w - - - /FbvFlwWK6 4Eidx%EtidWEbegWEendWSG\Foff6 D5S\KW5EfpS\EbFretWU5 Lw , , , /- - 5 B 5KW6EfpEidx%EtidWEbegWEendWS{WUFretWG\Fb6 B=}6 6:p= ף?X 2X 2X 2Y W% $ > $ > : ; I  I&II !I/  : ; : ;I8 : ;  : ;  : ; I8  : ; I8  : ;  : ; I : ;  : ; I 8  : ; I 8  : ;I8 : ;I' II.: ; ' I : ; I 4: ; I4: ; I.: ; ' .? : ; ' I 4  : ; I!".? : ;' I 4 #: ;I$: ;I%.: ; I &.? : ; ' I '.: ;' I (4: ;I)4: ;I* +.1@,1-41. 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'`/iG /U $/[  h   P@P <0t  H`bam_md.o/ 1364299899 1028 1024 100644 59744 ` ELF>P@@AWIAVAUATUSH_dH%(H$1G $HW0Ht$hD $DŽ$McIHIH$LL$AWIL(LL$T$d HPH$1H@L|$pAgfffD$PD$`MHT$@$HL$XHD$HT$<[DtjteƒtmL$TL$P~ HT$pD$`HD$XB;D$`r HL$XƒT$Tu|$TT$PLcD$dLt$hT$PMAHcLHȄ:D DT$PL$P@Nj\$PL|$xEMLL$xADуA)B DT$TDT$PHL$hJlDD$PLL$HD$ALT$D9IO0H=1LT$HLL$iL$LT$LLT$AG HLT$H[L`LT$LLT$IH9MJLL$HIO0LL$HMH=1LT$HLLD$HKZLLT$L$dL3 %(H[]A\A]A^A_þLLT$LHLT$HH|$HHH HHH HHH HHH HHH HrIrLL$LT$LT$LL$IBQHH|$HHH HHH HHH HHH HHH HIWHHT$@L$ LL$LL$HIGHD$HL$ kI]H;\$@HD$Hs}B(0IzHH|$HHH HHH HHH HHH HHH HrIrLL$LT$LT$LL$B(0IBIHH|$HHH HHH HHH HHH HHH HIGHLL$HD$@LL$IGHD$H L$iLLT$LT$HHH@HL$@HD$H*HIBLT$HD$HH{H1LT$HrH9VHHLL$HDDI4D F9 tH9(DML|$pI MB1fAWAVAUATUSH8GODw T$,HW0DL$,DHcMc|$MINIEN,(IT$,T$,E1D$(H1D$$D$ E1HD$Qt[tV^%f3\$E\$\$IL;d$:C&ÃuDHc|$DHA>HȄDDEH|>F A E؃)AC PfD‰AD<HcAAD) HLEtntAAt;McCL v-D9t%t!уD$ !!GT$$f.D9g\$AIL;d$DD$ Et%*ՋT$ 1@f(*9^Yu*T$$*L$,Y\*D$(^Xf.w6fW_f(f(\^Qf.YX ,H8[]A\A]A^A_f~T$(Ic1L<H9T$(AfD~/HcT$H:K1@H<H9u\$[\$(D$(D$$ $ $f(/AWAVAUATUHSHHG T$0WHt$8L0H$Do _fT$ $E1HItIAD$ L$0EHcHHL$P%HLLHH#19ZHEDEM}EA11EEEALB:1t<t6Efu.fHĘ[]A\A]A^A_fDfDHA9DDD)D)Љ1)ЃE)D$ AAA)DHd$ Dd$ U$D)AEED+L$ DDL$@)9}3)L$ D+L$ ))A)ED+\$ D\$@E F4zHcMcILu0T$T$HHIHcUHcT$T$HD$`~EH1f‰AHcAA H9EHc|$@D9|$ HD$h}SHct$ Ht$8T$ 1H|$h@H HɃD9 uD}McLLHD$8HT$`HD$HL$HD$t$@IHD$8H|$hDH$D$0gf}DuU1E1H\$0Hl$@A2t:t5t DAIE9EUDAuFD9}LL$8HcDI,DH+L$ 1I4Hl$H@HHH9t=D AuAA9uDLD8DFHD HH9uAEIE9DLH\$0Hl$@MA~"1A΃@A*APH9|DT$PEE~&1fD@A*DuPHD9|ANMZHLH|$`H|$hH|$HH|$81f.Eut$Pt'@tHqHt$P11D|$PE@E @tQEtLDmE~214A 1DA@A9|V@(ʈPH;U|AD$Z1D@@DeE~1@@BH9EAB1@EDD DHEDHDDE)D$ AADHd$ Dd$ 1EED+T$ T$@Y1ANMZH.DuMcLLHD$Xf}D]HD$@D\$0E1E1H\$pHl$xD$T4t<t7t DAID9L$TEUDAuB<Lc9~uAHL$8L|$HALcƋT$0A+T$ 1IJ,MK@DHL9t0LE1u9uEDHL9uK,HL$XD^ELD9߈~BAH\$XMcA)1ALIMDTE4A8ACֈHL9uHcL\$@ATATD_D9DAH\$@McA)1ALIMTE4A8ACֈHL9u9~;HT$@1D>NIf.A4@8FֈTHL9uDT$0AID9L$TWHl$xH\$pDuE~2M1f<A4@@8vW@@(APHA9|H|$XH|$@IDT$0DET$0DT$0AD$ AEѸD$@[@cfDAWE1AVE1AUE1ATIUSHXdH%(HD$H1fD$@rfD$0wD$D$D$$fLIP4vIH=1HT$HdH3%(HX[]A\A]A^A_$D$AAuDhH= 1D$D@ 8(AD$@AH= 1D$@A$%EHD$0HHD$D$P9HHt$@1I<IƸMn$IVtHHt$H$HcI|E18HD$HøDl$A1|$ MtL$DLHH<$HHLx9t4LIFHcH|$H@H4HT$,HIċ+ExT$LH|$ iT$LHS 9NC FHT$0HT$H|$D$jH|$P9VH5 H 9H 0H 7H (H /H ,H PH MfDHtH{0HLH|$LH<$1H|$@H 4pIFHcH=H@H к1NMMDRGBQZQEqreuNhbSC:n:Adbhu-[bam_fillmd1] different NM for read '%s': %d -> %d [bam_fillmd1] different MD for read '%s': '%s' -> '%s' [bam_fillmd] unrecognized option '-%c' Usage: samtools fillmd [-eubrS] Options: -e change identical bases to '=' -u uncompressed BAM output (for piping) -b compressed BAM output -S the input is SAM with header -A modify the quality string -r compute the BQ tag (without -A) or cap baseQ by BAQ (with -A) -E extended BAQ for better sensitivity but lower specificity [bam_fillmd] input SAM does not have header. Abort! [bam_fillmd] fail to find sequence '%s' in the reference. ?Zd;_@@V-?int^^B( &P 'W )^ 1- 4;W  B   1,  W# }# }# }# }# }#( }#0 }#8 }#@ }#H !}#P "}#X $7#` &=#h (W#p ,W#t .e#x 24# 3I# 4C# 8S# Ap# J{# K{# L{# M{# N# PW# RY#  7 7# =# W#, S B i B q W#fd W# # }# }# W#  q#$ W#4 W#8 W#< W#@ }#H }#P }#X #` !#h $}#p $}#x W B %i )fpr *fpw +!X $ %W# &# '# '#x ,# 0W# 1W# 2{#  3{#( 4#0 5W#8 6W#< 7W#@ 8#H 9{#P :6HW3X#Y3#Z9#[{#[{# [{#(\#0\#8]}#@}^ tid#pos#bin#### # ####J8V#W# W#$W#(V#0'sy\gbamW#x##? 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HHH?HHEH,HL$@LeHSHcIc $H HcH AD$H HH H91tHEHL$@H]HHHL$0L!ISHcIc $H HcH AD$H HH H91t HL$@HHL$0HHL$@L!HL$0L!H]AT$Ic$Hc H HcH ‹CH HH H9tHL$0HHEHH]HL$05HAHEHYL!H\$@II.UHcEIc $H HcH AD$H HH H9uLt$89@AT$Ic$HcMH HcH ‹EH HH H9LLkHktIL$0L}0HL$(Lt$(HL$XL|$PLA1tn@KT$HL$@t$T$HHL$t$HDxtHDx@8IHLt$XHL$PA1u@L+t$(L)I9u2AT$Ic$HcMH HcH ‹EH HH H9Lt$8M9HS5IHL$0IIHCLL!I.SHM0M|$0HL$(Ll$(HL$PL|$XLAU1to@T$HL$@t$T$HHL$t$HDxtHDx@8GIHLl$PHL$XAU1u@ L+l$(L)I9$1u2UHcEIc $H HcH AD$H HH H9HL$05L!fDHt$XL H|$PHt$PIƺ I9Lt$XHL$P@8|1@8(fDHL$05L!GDHt$PL H|$XHt$XIź I9u"HL$XLl$P_@8L9~|HL$0L;l$HHSHHHCLt$0HL$@H9L$0soLt$0IL;t$@HL$0DH)HL$@EHSHcHcMH HcH ‹EH HH H9sHL$0HHL$@H)HL$HHHh[]A\A]A^A_HH\$@`L{0Ml$0LLl$XL|$PL"@8HHH|$XHL$P1@yT$HL$@t$H|$ T$HHL$t$H|$ LBD@tLBD@tHt$X H|$PHt$P HD$(H9D$(H|$XHL$P1e@L)L)H9M|$0Lk0LLl$PL|$XL!fD@8>HHH|$PHL$X1@T$HL$@t$H|$ T$HHL$t$H|$ LBD@tLBD@tHt$P H|$XHt$X HD$(H9D$(H|$PHL$X1e@zL)L)H9 rM|$0Lk0LLl$XL|$PL!fD@8HHH|$XHL$P1@T$HL$@t$H|$ T$HHL$t$H|$ LBD@tLBD@tHt$X H|$PHt$P HD$HL$H9]H|$XHL$P1b@uL)L)H9:@8)@81u1SHcIc $H HcH AD$H HH H9HL$@H(@8@81u1SHcIc $H HcH AD$H HH H9HL$0L!&@8F1u1AT$Ic$Hc H HcH ‹CH HH H9H]<H].HL$0L!H9HL$@H:Le0Lk0LLl$PLd$XMD8 IHLt$PHT$XAD:t~EHT$L$L$HHT$HDptIDptHt$PL H|$XHt$XIƺ I9u.Lt$PHT$XAD:uEujM)L)I9|J L9=SHcHcMH HcH ‹EH HH H9bHL$0H)HL$@H=D8|A8fgfffff.AVAUATIUS~UAH1EuHlIf.DHM)H*Y,HIHHHUHL9u[]A\A]A^AWIAVAUATUHSHHH>-=|$8DD$<~H=IMLE1HD$(HHHHD$0IL11H2HtXLHT$HL$HT$HL$xhHHHH9wLD$(AFDE1LLމD$$wDt$$@8HT$HL$HT$HHL$H|@tH 1EAFH=D$$1LD$(E1LLDLHxD\$ [...] Options: -n sort by read names -r attach RG tag (inferred from file names) -u uncompressed BAM output -f overwrite the output BAM if exist -1 compress level 1 -R STR merge file in the specified region STR [all] -h FILE copy the header in FILE to [in1.bam] Note: Samtools' merge does not reconstruct the @RG dictionary in the header. Users must provide the correct header with -h, or uses Picard which properly maintains the header dictionary in merging. [%s] File '%s' exists. Please apply '-f' to overwrite. Abort. [sort_blocks] fail to create file %s. [bam_sort_core] fail to open file %s [bam_sort_core] truncated file. Continue anyway. [bam_sort_core] merging from %d files... Usage: samtools sort [-on] [-m ] .bamrwuw1wRGh:nru1R:frb%s.%.4d.bam%s.bamnom:bam_merge_corebam_merge]_L?C<8int?SSv?S1& , 1<   ?# # # # # #( #0 #8 #@ #H !#P "#X $G#` &M#h (?#p ,?#t .}#x 2h# 3o# 4S# 8c# A# J# K# L# M# N-# P?# Ri#  G G# M# ?#<c8 y8 1a 4F 88  ?#fd ?# # # # ?#  #$ ?#4 ?#8 ?#< ?#@ #H #P #X #` !#h $#p $#x?8 % )fpr *fpw +1X $ %?# &# '# '#x ,# 0?# 1?# 2#  3#( 4#0 5?#8 6?#< 7?#@ 8&#H 9#P : 6H Wd X# Yd# Zj# [# [#  [#( \-#0 \-#8 ]#@ ^ -tid #pos #bin # # # #  #  # # # # {8 ‡ -# ?#  ?#$ ?#( Ň#0y 8 ȣ ' E?@#@#A?#B #Zi$?#pos%#idx%#b&#',?h1?h2?A?Bp.?a.b.t1? e +? a+ b+ !t.? 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[sam_header_line_parse] multiple tabs on line [%s] (%d) The tag '%c%c' present (at least) twice on line [%s] [nextline] Insufficient memory! [sam_header_lookup_table] They key %s not unique. [sam_header_compare_lines] Unknown type [%c%c] Conflicting lines, cannot merge the headers.  5a 0`   0 ` Y0`p= ף??! 8intii1mb##### #(#0#8#@ #H!#P"#X$ #`&#h(b#p,b#t.p#x2F#3T#4#8'#A{#J#K#L#M#N-#Pb#R-# (x  8   M# M# # #     # # b# ' 8 = 8CPmbmjMynzy=(   y#  y#  y#  y#  #  #  # n=   Z  Z# Z# ###`key# #  8v # #` ,,2key=tag,`bc`c`=fpc2tag, PysP=hRy y6h 6key inc yk yi y y - -<}bv}c~=~v111g1-!nnlpMMMbM- b3__s  =KdKKlM" p yh pkey ret Sx yinc yk yi y y y - -! h p|bGtag|=|~b#6$6=%ap8H~&A:'j'_(T)Z $Z$Z*l\+!2 ,! -#.out$2/.old,,.new., 09 ,2-1 .tag,2'/3), $=$=$=*tag,*lenb4i? 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