LICENSE
MANIFEST.in
README.md
setup.py
pbalign/__init__.py
pbalign/bampostservice.py
pbalign/ccs.py
pbalign/filterservice.py
pbalign/options.py
pbalign/pbalignfiles.py
pbalign/pbalignrunner.py
pbalign/service.py
pbalign.egg-info/PKG-INFO
pbalign.egg-info/SOURCES.txt
pbalign.egg-info/dependency_links.txt
pbalign.egg-info/entry_points.txt
pbalign.egg-info/requires.txt
pbalign.egg-info/top_level.txt
pbalign/alignservice/__init__.py
pbalign/alignservice/align.py
pbalign/alignservice/blasr.py
pbalign/alignservice/bowtie.py
pbalign/alignservice/fastabasedalign.py
pbalign/alignservice/gmap.py
pbalign/tasks/__init__.py
pbalign/tasks/align_minorvariants.py
pbalign/tools/__init__.py
pbalign/tools/createChemistryHeader.py
pbalign/tools/extractUnmappedSubreads.py
pbalign/tools/loadChemistry.py
pbalign/tools/mask_aligned_reads.py
pbalign/utils/RgnH5IO.py
pbalign/utils/__init__.py
pbalign/utils/fileutil.py
pbalign/utils/progutil.py
pbalign/utils/tempfileutil.py