<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<tomtom version="4.12.0" release="Tue Jun 27 16:22:50 2017 -0700">
  <model>
    <command_line>tomtom -verbosity 1 -dist blic1 -oc results/tomtom13 common/sample.meme common/sample.meme</command_line>
    <distance_measure value="blic1"/>
    <threshold type="qvalue">0.5</threshold>
    <alphabet name="DNA" like="dna">
      <letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
      <letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
      <letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
      <letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
      <letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
      <letter id="V" symbol="V" equals="ACG" name="Not T"/>
      <letter id="H" symbol="H" equals="ACT" name="Not G"/>
      <letter id="D" symbol="D" equals="AGT" name="Not C"/>
      <letter id="B" symbol="B" equals="CGT" name="Not A"/>
      <letter id="M" symbol="M" equals="AC" name="Amino"/>
      <letter id="R" symbol="R" equals="AG" name="Purine"/>
      <letter id="W" symbol="W" equals="AT" name="Weak"/>
      <letter id="S" symbol="S" equals="CG" name="Strong"/>
      <letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
      <letter id="K" symbol="K" equals="GT" name="Keto"/>
    </alphabet>
    <strands>both</strands>
    <background from="first_target" A="0.25" C="0.25" G="0.25" T="0.25"/>
    <host>sh-ln04.stanford.edu</host>
    <when>Fri Apr  6 14:58:33 2018</when>
  </model>
  <query_dbs>
    <db source="common/sample.meme" name="sample" loaded="5" excluded="0" last_mod_date="Wed Jun 21 16:55:46 2017"/>
  </query_dbs>
  <target_dbs>
    <db source="common/sample.meme" name="sample" loaded="5" excluded="0" last_mod_date="Wed Jun 21 16:55:46 2017"/>
  </target_dbs>
  <queries>
    <motif db="0" id="V_AP4_01" length="18" nsites="5">
      <pos A="0.535744" C="0.0460373" G="0.0460373" T="0.372182"/>
      <pos A="0.208824" C="0.208824" G="0.536275" T="0.0460784"/>
      <pos A="0.536275" C="0.208824" G="0.208824" T="0.0460784"/>
      <pos A="0.372549" C="0.208824" G="0.372549" T="0.0460784"/>
      <pos A="0.208824" C="0.372549" G="0.0460784" T="0.372549"/>
      <pos A="0.0460373" C="0.861888" G="0.0460373" T="0.0460373"/>
      <pos A="0.861888" C="0.0460373" G="0.0460373" T="0.0460373"/>
      <pos A="0.0460373" C="0.0460373" G="0.861888" T="0.0460373"/>
      <pos A="0.0460373" C="0.861888" G="0.0460373" T="0.0460373"/>
      <pos A="0.0460784" C="0.0460784" G="0.208824" T="0.69902"/>
      <pos A="0.0460784" C="0.208824" G="0.69902" T="0.0460784"/>
      <pos A="0.0460784" C="0.372549" G="0.208824" T="0.372549"/>
      <pos A="0.208824" C="0.0460784" G="0.536275" T="0.208824"/>
      <pos A="0.0460373" C="0.0460373" G="0.861888" T="0.0460373"/>
      <pos A="0.209028" C="0.209028" G="0.209028" T="0.372917"/>
      <pos A="0.208824" C="0.69902" G="0.0460784" T="0.0460784"/>
      <pos A="0.372917" C="0.209028" G="0.209028" T="0.209028"/>
      <pos A="0.0460373" C="0.0460373" G="0.535744" T="0.372182"/>
    </motif>
    <motif db="0" id="V_CMYB_01" length="18" nsites="13">
      <pos A="0.0465203" C="0.436131" G="0.222985" T="0.294364"/>
      <pos A="0.222985" C="0.542208" G="0.188287" T="0.0465203"/>
      <pos A="0.202366" C="0.330382" G="0.297634" T="0.169618"/>
      <pos A="0.415725" C="0.135878" G="0.364122" T="0.0842748"/>
      <pos A="0.426641" C="0.295649" G="0.217252" T="0.060458"/>
      <pos A="0.185496" C="0.324427" G="0.165649" T="0.324427"/>
      <pos A="0.159537" C="0.0832011" G="0.655225" T="0.102037"/>
      <pos A="0.387939" C="0.0257252" G="0.484198" T="0.102137"/>
      <pos A="0.071374" C="0.802748" G="0.038626" T="0.0872519"/>
      <pos A="0.298626" C="0.298626" G="0.331374" T="0.071374"/>
      <pos A="0.00587786" C="0.00587786" G="0.982366" T="0.00587786"/>
      <pos A="0.00587786" C="0.00587786" G="0.00587786" T="0.982366"/>
      <pos A="0.00587786" C="0.00587786" G="0.00587786" T="0.982366"/>
      <pos A="0.184687" C="0.0217756" G="0.771762" T="0.0217756"/>
      <pos A="0.160687" C="0.160687" G="0.542748" T="0.135878"/>
      <pos A="0.0376336" C="0.207328" G="0.43458" T="0.320458"/>
      <pos A="0.108198" C="0.108198" G="0.581037" T="0.202567"/>
      <pos A="0.090229" C="0.019771" G="0.799771" T="0.090229"/>
    </motif>
    <motif db="0" id="V_E47_01" length="15" nsites="10">
      <pos A="0.35297" C="0.35297" G="0.270792" T="0.0232673"/>
      <pos A="0.188428" C="0.435705" G="0.35262" T="0.0232466"/>
      <pos A="0.270524" C="0.188428" G="0.35262" T="0.188428"/>
      <pos A="0.188428" C="0.0232466" G="0.765079" T="0.0232466"/>
      <pos A="0.0232466" C="0.93026" G="0.0232466" T="0.0232466"/>
      <pos A="0.93026" C="0.0232466" G="0.0232466" T="0.0232466"/>
      <pos A="0.0232466" C="0.0232466" G="0.93026" T="0.0232466"/>
      <pos A="0.105343" C="0.188428" G="0.682983" T="0.0232466"/>
      <pos A="0.0232466" C="0.0232466" G="0.0232466" T="0.93026"/>
      <pos A="0.0232466" C="0.0232466" G="0.93026" T="0.0232466"/>
      <pos A="0.0232673" C="0.0232673" G="0.35297" T="0.600495"/>
      <pos A="0.105446" C="0.35297" G="0.270792" T="0.270792"/>
      <pos A="0.105343" C="0.517802" G="0.188428" T="0.188428"/>
      <pos A="0.105446" C="0.35297" G="0.35297" T="0.188614"/>
      <pos A="0.115347" C="0.384653" G="0.205446" T="0.294554"/>
    </motif>
    <motif db="0" id="V_MYOD_01" length="12" nsites="5">
      <pos A="0.208824" C="0.372549" G="0.372549" T="0.0460784"/>
      <pos A="0.372549" C="0.208824" G="0.372549" T="0.0460784"/>
      <pos A="0.536275" C="0.0460784" G="0.208824" T="0.208824"/>
      <pos A="0.0460373" C="0.861888" G="0.0460373" T="0.0460373"/>
      <pos A="0.861888" C="0.0460373" G="0.0460373" T="0.0460373"/>
      <pos A="0.0460784" C="0.0460784" G="0.69902" T="0.208824"/>
      <pos A="0.0460784" C="0.208824" G="0.69902" T="0.0460784"/>
      <pos A="0.0460373" C="0.0460373" G="0.0460373" T="0.861888"/>
      <pos A="0.0460373" C="0.0460373" G="0.861888" T="0.0460373"/>
      <pos A="0.0460784" C="0.208824" G="0.372549" T="0.372549"/>
      <pos A="0.0460373" C="0.372182" G="0.0460373" T="0.535744"/>
      <pos A="0.208824" C="0.0460784" G="0.536275" T="0.208824"/>
    </motif>
    <motif db="0" id="V_VMYB_01" length="10" nsites="24">
      <pos A="0.528838" C="0.170332" G="0.170332" T="0.130498"/>
      <pos A="0.568672" C="0.130498" G="0.210166" T="0.0906639"/>
      <pos A="0.0906639" C="0.289834" G="0.0508299" T="0.568672"/>
      <pos A="0.927178" C="0.0109959" G="0.0109959" T="0.0508299"/>
      <pos A="0.967012" C="0.0109959" G="0.0109959" T="0.0109959"/>
      <pos A="0.0508299" C="0.927178" G="0.0109959" T="0.0109959"/>
      <pos A="0.0109959" C="0.0508299" G="0.688174" T="0.25"/>
      <pos A="0.0508299" C="0.0508299" G="0.84751" T="0.0508299"/>
      <pos A="0.44917" C="0.210166" G="0.170332" T="0.170332"/>
      <pos A="0.489004" C="0.210166" G="0.0906639" T="0.210166"/>
    </motif>
  </queries>
  <targets>
    <motif db="0" id="V_CMYB_01" length="18" nsites="13">
      <pos A="0.0465203" C="0.436131" G="0.222985" T="0.294364"/>
      <pos A="0.222985" C="0.542208" G="0.188287" T="0.0465203"/>
      <pos A="0.202366" C="0.330382" G="0.297634" T="0.169618"/>
      <pos A="0.415725" C="0.135878" G="0.364122" T="0.0842748"/>
      <pos A="0.426641" C="0.295649" G="0.217252" T="0.060458"/>
      <pos A="0.185496" C="0.324427" G="0.165649" T="0.324427"/>
      <pos A="0.159537" C="0.0832011" G="0.655225" T="0.102037"/>
      <pos A="0.387939" C="0.0257252" G="0.484198" T="0.102137"/>
      <pos A="0.071374" C="0.802748" G="0.038626" T="0.0872519"/>
      <pos A="0.298626" C="0.298626" G="0.331374" T="0.071374"/>
      <pos A="0.00587786" C="0.00587786" G="0.982366" T="0.00587786"/>
      <pos A="0.00587786" C="0.00587786" G="0.00587786" T="0.982366"/>
      <pos A="0.00587786" C="0.00587786" G="0.00587786" T="0.982366"/>
      <pos A="0.184687" C="0.0217756" G="0.771762" T="0.0217756"/>
      <pos A="0.160687" C="0.160687" G="0.542748" T="0.135878"/>
      <pos A="0.0376336" C="0.207328" G="0.43458" T="0.320458"/>
      <pos A="0.108198" C="0.108198" G="0.581037" T="0.202567"/>
      <pos A="0.090229" C="0.019771" G="0.799771" T="0.090229"/>
    </motif>
    <motif db="0" id="V_E47_01" length="15" nsites="10">
      <pos A="0.35297" C="0.35297" G="0.270792" T="0.0232673"/>
      <pos A="0.188428" C="0.435705" G="0.35262" T="0.0232466"/>
      <pos A="0.270524" C="0.188428" G="0.35262" T="0.188428"/>
      <pos A="0.188428" C="0.0232466" G="0.765079" T="0.0232466"/>
      <pos A="0.0232466" C="0.93026" G="0.0232466" T="0.0232466"/>
      <pos A="0.93026" C="0.0232466" G="0.0232466" T="0.0232466"/>
      <pos A="0.0232466" C="0.0232466" G="0.93026" T="0.0232466"/>
      <pos A="0.105343" C="0.188428" G="0.682983" T="0.0232466"/>
      <pos A="0.0232466" C="0.0232466" G="0.0232466" T="0.93026"/>
      <pos A="0.0232466" C="0.0232466" G="0.93026" T="0.0232466"/>
      <pos A="0.0232673" C="0.0232673" G="0.35297" T="0.600495"/>
      <pos A="0.105446" C="0.35297" G="0.270792" T="0.270792"/>
      <pos A="0.105343" C="0.517802" G="0.188428" T="0.188428"/>
      <pos A="0.105446" C="0.35297" G="0.35297" T="0.188614"/>
      <pos A="0.115347" C="0.384653" G="0.205446" T="0.294554"/>
    </motif>
    <motif db="0" id="V_MYOD_01" length="12" nsites="5">
      <pos A="0.208824" C="0.372549" G="0.372549" T="0.0460784"/>
      <pos A="0.372549" C="0.208824" G="0.372549" T="0.0460784"/>
      <pos A="0.536275" C="0.0460784" G="0.208824" T="0.208824"/>
      <pos A="0.0460373" C="0.861888" G="0.0460373" T="0.0460373"/>
      <pos A="0.861888" C="0.0460373" G="0.0460373" T="0.0460373"/>
      <pos A="0.0460784" C="0.0460784" G="0.69902" T="0.208824"/>
      <pos A="0.0460784" C="0.208824" G="0.69902" T="0.0460784"/>
      <pos A="0.0460373" C="0.0460373" G="0.0460373" T="0.861888"/>
      <pos A="0.0460373" C="0.0460373" G="0.861888" T="0.0460373"/>
      <pos A="0.0460784" C="0.208824" G="0.372549" T="0.372549"/>
      <pos A="0.0460373" C="0.372182" G="0.0460373" T="0.535744"/>
      <pos A="0.208824" C="0.0460784" G="0.536275" T="0.208824"/>
    </motif>
    <motif db="0" id="V_VMYB_01" length="10" nsites="24">
      <pos A="0.528838" C="0.170332" G="0.170332" T="0.130498"/>
      <pos A="0.568672" C="0.130498" G="0.210166" T="0.0906639"/>
      <pos A="0.0906639" C="0.289834" G="0.0508299" T="0.568672"/>
      <pos A="0.927178" C="0.0109959" G="0.0109959" T="0.0508299"/>
      <pos A="0.967012" C="0.0109959" G="0.0109959" T="0.0109959"/>
      <pos A="0.0508299" C="0.927178" G="0.0109959" T="0.0109959"/>
      <pos A="0.0109959" C="0.0508299" G="0.688174" T="0.25"/>
      <pos A="0.0508299" C="0.0508299" G="0.84751" T="0.0508299"/>
      <pos A="0.44917" C="0.210166" G="0.170332" T="0.170332"/>
      <pos A="0.489004" C="0.210166" G="0.0906639" T="0.210166"/>
    </motif>
  </targets>
  <matches>
    <query idx="3">
      <target idx="3" rc="y" off="-1" pv="7.86e-05" ev="3.93e-04" qv="7.86e-04"/>
      <target idx="1" rc="n" off="1" pv="2.83e-02" ev="1.41e-01" qv="9.43e-02"/>
      <target idx="0" rc="n" off="5" pv="1.02e-01" ev="5.11e-01" qv="2.55e-01"/>
    </query>
    <query idx="2">
      <target idx="1" rc="n" off="0" pv="7.14e-05" ev="3.57e-04" qv="7.14e-04"/>
      <target idx="3" rc="y" off="-2" pv="6.22e-04" ev="3.11e-03" qv="3.11e-03"/>
      <target idx="0" rc="n" off="4" pv="3.01e-02" ev="1.51e-01" qv="7.53e-02"/>
      <target idx="2" rc="n" off="-1" pv="1.08e-01" ev="5.42e-01" qv="1.81e-01"/>
    </query>
    <query idx="4">
      <target idx="3" rc="n" off="0" pv="7.89e-12" ev="3.94e-11" qv="7.89e-11"/>
      <target idx="0" rc="y" off="2" pv="1.73e-03" ev="8.64e-03" qv="8.64e-03"/>
    </query>
    <query idx="1">
      <target idx="0" rc="n" off="0" pv="2.61e-07" ev="1.30e-06" qv="2.61e-06"/>
      <target idx="3" rc="y" off="-6" pv="2.68e-06" ev="1.34e-05" qv="1.34e-05"/>
      <target idx="1" rc="n" off="-4" pv="5.32e-02" ev="2.66e-01" qv="1.33e-01"/>
    </query>
    <query idx="0">
      <target idx="3" rc="y" off="-3" pv="2.14e-04" ev="1.07e-03" qv="1.16e-03"/>
    </query>
  </matches>
  <runtime cycles="140304" seconds="0.140"/>
</tomtom>
