******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= common/adh.s ALPHABET= ACDEFGHIKLMNPQRSTVWY Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 2BHD_STREX 1.0000 255 3BHD_COMTE 1.0000 253 ADH_DROME 1.0000 255 AP27_MOUSE 1.0000 244 BA72_EUBSP 1.0000 249 BDH_HUMAN 1.0000 343 BPHB_PSEPS 1.0000 275 BUDC_KLETE 1.0000 241 DHES_HUMAN 1.0000 327 DHGB_BACME 1.0000 262 DHII_HUMAN 1.0000 292 DHMA_FLAS1 1.0000 270 ENTA_ECOLI 1.0000 248 FIXR_BRAJA 1.0000 278 GUTD_ECOLI 1.0000 259 HDE_CANTR 1.0000 906 HDHA_ECOLI 1.0000 255 LIGD_PSEPA 1.0000 305 NODG_RHIME 1.0000 245 RIDH_KLEAE 1.0000 249 YINL_LISMO 1.0000 248 YRTP_BACSU 1.0000 238 CSGA_MYXXA 1.0000 166 DHB2_HUMAN 1.0000 387 DHB3_HUMAN 1.0000 310 DHCA_HUMAN 1.0000 276 FABI_ECOLI 1.0000 262 FVT1_HUMAN 1.0000 332 HMTR_LEIMA 1.0000 287 MAS1_AGRRA 1.0000 476 PCR_PEA 1.0000 399 RFBB_NEIGO 1.0000 346 YURA_MYXXA 1.0000 258 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme common/adh.s -oc results/meme6 -mod tcm -protein -nmotifs 2 -minw 8 -nostatus model: mod= tcm nmotifs= 2 evt= inf object function= E-value of product of p-values width: minw= 8 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 50 wnsites= 0.8 theta: spmap= pam spfuzz= 120 global: substring= yes branching= no wbranch= no em: prior= megap b= 49980 maxiter= 50 distance= 1e-05 data: n= 9996 N= 33 shuffle= -1 sample: seed= 0 ctfrac= -1 maxwords= -1 Dirichlet mixture priors file: prior30.plib Letter frequencies in dataset: A 0.111 C 0.012 D 0.050 E 0.055 F 0.036 G 0.090 H 0.018 I 0.057 K 0.052 L 0.092 M 0.027 N 0.041 P 0.041 Q 0.029 R 0.049 S 0.064 T 0.057 V 0.083 W 0.010 Y 0.027 Background letter frequencies (from dataset with add-one prior applied): A 0.111 C 0.012 D 0.050 E 0.055 F 0.036 G 0.090 H 0.018 I 0.057 K 0.052 L 0.092 M 0.027 N 0.041 P 0.041 Q 0.029 R 0.049 S 0.064 T 0.057 V 0.083 W 0.010 Y 0.027 ******************************************************************************** ******************************************************************************** MOTIF KVVJVTGAGSGIGKATAKALAKEGAKVVV MEME-1 width = 29 sites = 31 llr = 1147 E-value = 1.7e-171 ******************************************************************************** -------------------------------------------------------------------------------- Motif KVVJVTGAGSGIGKATAKALAKEGAKVVV MEME-1 Description -------------------------------------------------------------------------------- Simplified A :14::::531:::1516:2:422:51:11 pos.-specific C :::::::1::::::::1:::::::::::: probability D ::::::::1:::::1:::1:::1:::::: matrix E ::::::::::::::2::11::22:::::: F :::::::::::::1:::::3::::1::1: G ::::::a4329:a:::::1::1:8:::1: H :::::::::::::1::::1:1:::::::: I ::135::::::6:::2:1::1:::::1:1 K 61:::::::2:::3:::3:::31:14::: L :::5:::::::3:2:2:2161:1:1:1:3 M :::::::::::::::1::::::::::::: N :1::::::1:::::::::::::1::1::: P 1:::::::::::::::::::::::::::: Q 1::::::::1:::::::::::11:::::: R :::::::::2:::2:::21::11::1::: S :::::::133::::1:1::::11:1111: T :1:::9:::::::::3::1::1:::::1: V :5425::::::1:::12:1:1:::::653 W ::::::::::::::::::::::::::::: Y :::::::::::::::1::::::::1:::: bits 6.7 6.0 5.4 4.7 Relative 4.0 Entropy 3.4 ** * (53.4 bits) 2.7 *** * * * * 2.0 * ****** *** * * * * 1.3 ****************** *** ****** 0.7 ***************************** 0.0 ----------------------------- Multilevel KVALVTGAGSGIGKATAKXLAKEGAKVVL consensus VII GA L I F A V sequence S -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVVJVTGAGSGIGKATAKALAKEGAKVVV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------- HDE_CANTR 323 4.87e-24 SGAPTVSLKD KVVLITGAGAGLGKEYAKWFAKYGAKVVV NDFKDATKTV DHII_HUMAN 35 2.52e-22 EEFRPEMLQG KKVIVTGASKGIGREMAYHLAKMGAHVVV TARSKETLQK YINL_LISMO 6 4.39e-22 MTIKN KVIIITGASSGIGKATALLLAEKGAKLVL AARRVEKLEK HDE_CANTR 9 1.90e-21 MSPVDFKD KVVIITGAGGGLGKYYSLEFAKLGAKVVV NDLGGALNGQ HDHA_ECOLI 12 2.00e-20 FNSDNLRLDG KCAIITGAGAGIGKEIAITFATAGASVVV SDINADAANH BUDC_KLETE 3 3.60e-20 MQ KVALVTGAGQGIGKAIALRLVKDGFAVAI ADYNDATATA RIDH_KLEAE 15 6.40e-20 VSSMNTSLSG KVAAITGAASGIGLECARTLLGAGAKVVL IDREGEKLNK ENTA_ECOLI 6 1.75e-19 MDFSG KNVWVTGAGKGIGYATALAFVEAGAKVTG FDQAFTQEQY YRTP_BACSU 7 8.70e-19 MQSLQH KTALITGGGRGIGRATALALAKEGVNIGL IGRTSANVEK DHGB_BACME 8 8.70e-19 MYKDLEG KVVVITGSSTGLGKSMAIRFATEKAKVVV NYRSKEDEAN AP27_MOUSE 8 9.65e-19 MKLNFSG LRALVTGAGKGIGRDTVKALHASGAKVVA VTRTNSDLVS DHB3_HUMAN 49 1.31e-18 LPKSFLRSMG QWAVITGAGDGIGKAYSFELAKRGLNVVL ISRTLEKLEA DHMA_FLAS1 15 2.42e-18 VSRRPGRLAG KAAIVTGAAGGIGRATVEAYLREGASVVA MDLAPRLAAT BA72_EUBSP 7 5.89e-18 MNLVQD KVTIITGGTRGIGFAAAKIFIDNGAKVSI FGETQEEVDT 3BHD_COMTE 7 1.16e-17 TNRLQG KVALVTGGASGVGLEVVKLLLGEGAKVAF SDINEAAGQQ PCR_PEA 87 1.86e-17 SSEGKKTLRK GNVVITGASSGLGLATAKALAESGKWHVI MACRDYLKAA BDH_HUMAN 56 2.04e-17 YASAAEPVGS KAVLVTGCDSGFGFSLAKHLHSKGFLVFA GCLMKDKGHD FIXR_BRAJA 37 4.28e-17 VNARVDRGEP KVMLLTGASRGIGHATAKLFSEAGWRIIS CARQPFDGER FVT1_HUMAN 33 4.69e-17 ISPKPLALPG AHVVVTGGSSGIGKCIAIECYKQGAFITL VARNEDKLLQ DHB2_HUMAN 83 5.62e-17 SGQELLPVDQ KAVLVTGGDCGLGHALCKYLDELGFTVFA GVLNENGPGA 2BHD_STREX 7 5.62e-17 MNDLSG KTVIITGGARGLGAEAARQAVAAGARVVL ADVLDEEGAA HMTR_LEIMA 7 7.37e-17 MTAPTV PVALVTGAAKRLGRSIAEGLHAEGYAVCL HYHRSAAEAN LIGD_PSEPA 7 6.46e-16 MKDFQD QVAFITGGASGAGFGQAKVFGQAGAKIVV ADVRAEAVEK NODG_RHIME 7 1.74e-15 MFELTG RKALVTGASGAIGGAIARVLHAQGAIVGL HGTQIEKLET DHCA_HUMAN 5 4.22e-15 SSGI HVALVTGGNKGIGLAIVRDLCRLFSGDVV LTARDVTRGQ MAS1_AGRRA 246 1.08e-14 SHWTVEIHQS PVILVSGSNRGVGKAIAEDLIAHGYRLSL GARKVKDLEV DHES_HUMAN 3 3.88e-14 AR TVVLITGCSSGIGLHLAVRLASDPSQSFK VYATLRDLKT BPHB_PSEPS 6 4.84e-14 MKLKG EAVLITGGASGLGRALVDRFVAEAKVAVL DKSAERLAEL GUTD_ECOLI 3 1.24e-13 MN QVAVVIGGGQTLGAFLCHGLAAEGYRVAV VDIQSDKAAN RFBB_NEIGO 7 7.54e-13 MQTEGK KNILVTGGAGFIGSAVVRHIIQNTRDSVV NLDKLTYAGN ADH_DROME 7 3.42e-11 SFTLTN KNVIFVAGLGGIGLDTSKELLKRDLKNLV ILDRIENPAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVVJVTGAGSGIGKATAKALAKEGAKVVV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- HDE_CANTR 1.9e-21 8_[1]_285_[1]_555 DHII_HUMAN 2.5e-22 34_[1]_229 YINL_LISMO 4.4e-22 5_[1]_214 HDHA_ECOLI 2e-20 11_[1]_215 BUDC_KLETE 3.6e-20 2_[1]_210 RIDH_KLEAE 6.4e-20 14_[1]_206 ENTA_ECOLI 1.8e-19 5_[1]_214 YRTP_BACSU 8.7e-19 6_[1]_203 DHGB_BACME 8.7e-19 7_[1]_226 AP27_MOUSE 9.6e-19 7_[1]_208 DHB3_HUMAN 1.3e-18 48_[1]_233 DHMA_FLAS1 2.4e-18 14_[1]_227 BA72_EUBSP 5.9e-18 6_[1]_214 3BHD_COMTE 1.2e-17 6_[1]_218 PCR_PEA 1.9e-17 86_[1]_284 BDH_HUMAN 2e-17 55_[1]_259 FIXR_BRAJA 4.3e-17 36_[1]_213 FVT1_HUMAN 4.7e-17 32_[1]_271 DHB2_HUMAN 5.6e-17 82_[1]_276 2BHD_STREX 5.6e-17 6_[1]_220 HMTR_LEIMA 7.4e-17 6_[1]_252 LIGD_PSEPA 6.5e-16 6_[1]_270 NODG_RHIME 1.7e-15 6_[1]_210 DHCA_HUMAN 4.2e-15 4_[1]_243 MAS1_AGRRA 1.1e-14 245_[1]_202 DHES_HUMAN 3.9e-14 2_[1]_296 BPHB_PSEPS 4.8e-14 5_[1]_241 GUTD_ECOLI 1.2e-13 2_[1]_228 RFBB_NEIGO 7.5e-13 6_[1]_311 ADH_DROME 3.4e-11 6_[1]_220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVVJVTGAGSGIGKATAKALAKEGAKVVV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KVVJVTGAGSGIGKATAKALAKEGAKVVV width=29 seqs=31 HDE_CANTR ( 323) KVVLITGAGAGLGKEYAKWFAKYGAKVVV 1 DHII_HUMAN ( 35) KKVIVTGASKGIGREMAYHLAKMGAHVVV 1 YINL_LISMO ( 6) KVIIITGASSGIGKATALLLAEKGAKLVL 1 HDE_CANTR ( 9) KVVIITGAGGGLGKYYSLEFAKLGAKVVV 1 HDHA_ECOLI ( 12) KCAIITGAGAGIGKEIAITFATAGASVVV 1 BUDC_KLETE ( 3) KVALVTGAGQGIGKAIALRLVKDGFAVAI 1 RIDH_KLEAE ( 15) KVAAITGAASGIGLECARTLLGAGAKVVL 1 ENTA_ECOLI ( 6) KNVWVTGAGKGIGYATALAFVEAGAKVTG 1 YRTP_BACSU ( 7) KTALITGGGRGIGRATALALAKEGVNIGL 1 DHGB_BACME ( 8) KVVVITGSSTGLGKSMAIRFATEKAKVVV 1 AP27_MOUSE ( 8) LRALVTGAGKGIGRDTVKALHASGAKVVA 1 DHB3_HUMAN ( 49) QWAVITGAGDGIGKAYSFELAKRGLNVVL 1 DHMA_FLAS1 ( 15) KAAIVTGAAGGIGRATVEAYLREGASVVA 1 BA72_EUBSP ( 7) KVTIITGGTRGIGFAAAKIFIDNGAKVSI 1 3BHD_COMTE ( 7) KVALVTGGASGVGLEVVKLLLGEGAKVAF 1 PCR_PEA ( 87) GNVVITGASSGLGLATAKALAESGKWHVI 1 BDH_HUMAN ( 56) KAVLVTGCDSGFGFSLAKHLHSKGFLVFA 1 FIXR_BRAJA ( 37) KVMLLTGASRGIGHATAKLFSEAGWRIIS 1 FVT1_HUMAN ( 33) AHVVVTGGSSGIGKCIAIECYKQGAFITL 1 DHB2_HUMAN ( 83) KAVLVTGGDCGLGHALCKYLDELGFTVFA 1 2BHD_STREX ( 7) KTVIITGGARGLGAEAARQAVAAGARVVL 1 HMTR_LEIMA ( 7) PVALVTGAAKRLGRSIAEGLHAEGYAVCL 1 LIGD_PSEPA ( 7) QVAFITGGASGAGFGQAKVFGQAGAKIVV 1 NODG_RHIME ( 7) RKALVTGASGAIGGAIARVLHAQGAIVGL 1 DHCA_HUMAN ( 5) HVALVTGGNKGIGLAIVRDLCRLFSGDVV 1 MAS1_AGRRA ( 246) PVILVSGSNRGVGKAIAEDLIAHGYRLSL 1 DHES_HUMAN ( 3) TVVLITGCSSGIGLHLAVRLASDPSQSFK 1 BPHB_PSEPS ( 6) EAVLITGGASGLGRALVDRFVAEAKVAVL 1 GUTD_ECOLI ( 3) QVAVVIGGGQTLGAFLCHGLAAEGYRVAV 1 RFBB_NEIGO ( 7) KNILVTGGAGFIGSAVVRHIIQNTRDSVV 1 ADH_DROME ( 7) KNVIFVAGLGGIGLDTSKELLKRDLKNLV 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVVJVTGAGSGIGKATAKALAKEGAKVVV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 29 n= 9072 bayes= 8.15118 E= 1.7e-171 -140 -325 -219 -27 -366 -145 81 -367 333 -144 -287 -179 48 166 -25 -195 -56 -361 -336 -287 3 114 -298 -229 -280 -404 63 -170 24 -256 -216 135 -337 -174 -57 -245 10 244 140 -280 182 -323 -682 -627 -411 -666 -561 95 -606 -329 26 -586 -608 -559 -621 -534 -77 231 -520 -487 -168 -281 -594 -516 -6 -566 -400 210 -485 235 -186 -478 -495 -403 -473 -424 -346 92 161 -343 -538 -367 -752 -715 -17 -778 -709 296 -706 -119 -345 -681 -691 -667 -743 -666 -468 251 -609 -570 -384 -246 -429 -457 -428 -528 -361 -102 -371 -454 -315 -253 -432 -313 -386 -21 389 -145 -402 -449 -193 -340 -331 -392 -498 336 -355 -517 -375 -560 -464 -287 -436 -388 -379 -303 -417 -500 -391 -443 210 238 -652 -648 -613 206 -572 -631 -665 -643 -567 -526 -486 -526 -610 14 -369 -504 -589 -634 114 -385 47 -316 -544 160 -279 -582 -332 -155 -522 83 -441 -293 -404 195 -70 -549 -527 -451 -69 115 -40 -134 -353 60 -146 -358 155 -344 -277 -166 -293 119 153 197 -53 -350 -328 -276 -199 -332 -312 -374 -107 328 -337 -501 -356 -545 -448 -269 -423 -371 -131 -291 -156 -488 -374 -426 -194 -333 -573 -550 -31 -633 -500 335 -514 145 -206 -508 -557 -473 -542 -490 -391 7 -420 -408 -592 -554 -572 -640 -700 346 -570 -757 -620 -763 -711 -539 -628 -617 -613 -558 -654 -745 -590 -654 -71 -309 -233 -161 119 -145 167 -331 232 86 -273 -191 -314 -106 180 -62 -223 -335 -330 15 227 100 -15 119 -66 -150 32 -323 -213 -329 -266 -242 -362 -184 -259 39 -223 -238 -316 -30 -71 133 -488 -410 -221 -452 -294 190 -377 80 122 -366 -399 6 -372 -306 202 -7 -261 168 256 214 -499 -460 -435 -334 -431 -422 -463 -439 -376 -434 -465 -409 -458 53 -304 94 -422 -470 -268 -289 -45 81 -28 -362 81 57 243 60 -255 -180 -301 -100 153 -192 -208 -123 -316 15 39 -306 34 117 -343 -61 219 -88 -115 -10 -268 -166 -290 50 124 -180 20 -49 147 13 -181 123 -619 -539 281 -611 -411 -49 -511 266 -172 -514 -512 -412 -488 -472 -395 -293 -334 16 154 132 -81 -398 -225 -152 258 82 -368 50 -166 -360 -398 -306 -367 -84 -238 66 -263 22 83 -313 -40 144 -351 -61 -144 -355 214 -342 -274 -165 -290 120 41 12 20 -347 -326 -274 63 -311 34 186 -348 -350 82 -353 53 -11 12 66 -288 120 41 13 -202 -345 -324 13 -200 -333 -122 -373 -108 322 -337 -501 -136 -545 -447 -268 -118 -371 -360 -291 -157 -488 -373 -426 230 -109 -397 -337 89 -309 -292 -220 -16 -71 -211 -334 -407 -284 -98 -4 -233 -97 118 126 -68 -311 -40 -130 -32 -143 82 -90 255 -142 -272 66 -288 51 124 13 -52 -133 147 -271 -143 -123 -188 -328 -281 -441 -54 62 -335 -129 -224 -162 -318 -307 -310 -127 -173 309 -339 -382 -48 95 -419 -368 85 -107 -279 -11 -357 -119 -187 -359 -357 -310 -341 -46 -11 275 -292 -296 14 -184 -488 -410 -4 -152 -294 85 -74 169 -162 -366 -399 -312 -372 -87 -239 184 -262 -251 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVVJVTGAGSGIGKATAKALAKEGAKVVV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 29 nsites= 31 E= 1.7e-171 0.032258 0.000000 0.000000 0.032258 0.000000 0.032258 0.032258 0.000000 0.612903 0.032258 0.000000 0.000000 0.064516 0.096774 0.032258 0.000000 0.032258 0.000000 0.000000 0.000000 0.129032 0.032258 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.064516 0.000000 0.000000 0.129032 0.000000 0.000000 0.032258 0.000000 0.064516 0.483871 0.032258 0.000000 0.419355 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.096774 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.419355 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.258065 0.000000 0.483871 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.161290 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.451613 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.483871 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.903226 0.032258 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.967742 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.483871 0.064516 0.000000 0.000000 0.000000 0.387097 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.064516 0.000000 0.000000 0.000000 0.000000 0.258065 0.000000 0.064516 0.000000 0.000000 0.290323 0.000000 0.000000 0.000000 0.032258 0.000000 0.064516 0.000000 0.000000 0.000000 0.258065 0.032258 0.000000 0.000000 0.000000 0.064516 0.032258 0.032258 0.000000 0.000000 0.161290 0.000000 0.000000 0.161290 0.000000 0.000000 0.000000 0.000000 0.064516 0.161290 0.290323 0.032258 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.032258 0.870968 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.032258 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.580645 0.000000 0.290323 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.064516 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.064516 0.000000 0.000000 0.000000 0.096774 0.032258 0.064516 0.000000 0.290323 0.193548 0.000000 0.000000 0.000000 0.000000 0.193548 0.032258 0.000000 0.000000 0.000000 0.032258 0.483871 0.032258 0.064516 0.193548 0.032258 0.032258 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.096774 0.000000 0.000000 0.000000 0.032258 0.064516 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.225806 0.000000 0.161290 0.064516 0.000000 0.000000 0.032258 0.000000 0.000000 0.258065 0.064516 0.000000 0.096774 0.645161 0.064516 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.096774 0.000000 0.193548 0.000000 0.000000 0.000000 0.000000 0.032258 0.096774 0.032258 0.000000 0.032258 0.096774 0.322581 0.161290 0.000000 0.000000 0.000000 0.000000 0.161290 0.000000 0.000000 0.032258 0.000000 0.032258 0.161290 0.000000 0.064516 0.129032 0.000000 0.064516 0.096774 0.032258 0.000000 0.096774 0.000000 0.000000 0.000000 0.032258 0.129032 0.000000 0.064516 0.064516 0.032258 0.032258 0.032258 0.032258 0.000000 0.000000 0.290323 0.000000 0.000000 0.032258 0.000000 0.580645 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.354839 0.032258 0.032258 0.000000 0.000000 0.032258 0.129032 0.096774 0.000000 0.129032 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.129032 0.000000 0.032258 0.225806 0.000000 0.032258 0.161290 0.000000 0.064516 0.000000 0.000000 0.258065 0.000000 0.000000 0.000000 0.000000 0.064516 0.064516 0.064516 0.064516 0.000000 0.000000 0.000000 0.193548 0.000000 0.064516 0.225806 0.000000 0.000000 0.032258 0.000000 0.064516 0.096774 0.032258 0.064516 0.000000 0.064516 0.064516 0.064516 0.000000 0.000000 0.000000 0.032258 0.032258 0.000000 0.032258 0.000000 0.032258 0.806452 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.516129 0.000000 0.000000 0.000000 0.096774 0.000000 0.000000 0.000000 0.064516 0.064516 0.000000 0.000000 0.000000 0.000000 0.032258 0.064516 0.000000 0.032258 0.032258 0.096774 0.064516 0.000000 0.032258 0.000000 0.032258 0.032258 0.032258 0.032258 0.354839 0.032258 0.000000 0.064516 0.000000 0.032258 0.129032 0.064516 0.032258 0.032258 0.032258 0.000000 0.032258 0.000000 0.032258 0.000000 0.000000 0.000000 0.032258 0.129032 0.000000 0.064516 0.000000 0.032258 0.000000 0.000000 0.000000 0.064516 0.000000 0.612903 0.000000 0.000000 0.096774 0.032258 0.000000 0.000000 0.096774 0.064516 0.000000 0.032258 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.064516 0.064516 0.516129 0.000000 0.000000 0.129032 0.000000 0.000000 0.000000 0.032258 0.032258 0.000000 0.096774 0.032258 0.322581 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.322581 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVVJVTGAGSGIGKATAKALAKEGAKVVV MEME-1 regular expression -------------------------------------------------------------------------------- KV[AV][LI][VI]TG[AG][GAS]SG[IL]GKA[TI]AKX[LF]A[KA]EGAKVV[LV] -------------------------------------------------------------------------------- Time 11.03 secs. ******************************************************************************** ******************************************************************************** MOTIF GLVGNPGASAYSASKAAVEGLTRSLALELAPY MEME-2 width = 32 sites = 31 llr = 1121 E-value = 1.2e-144 ******************************************************************************** -------------------------------------------------------------------------------- Motif GLVGNPGASAYSASKAAVEGLTRSLALELAPY MEME-2 Description -------------------------------------------------------------------------------- Simplified A 21:2:11132:162:56112:1:215:::4:: pos.-specific C :::::::::::1:::::::::::::::::::: probability D ::::::::::::::::::1::::::::2:::: matrix E :1:::11:::::::::::1:::31:::5::11 F :11::1:1:::::::31:::3:::::1::::: G 61:4:131:1:2:::12::4:::1:1::111: H :1:::::::::::::::::1::1::::::::1 I :11:11:::::::::::11:::::::::1::: K :1::::::::::::a:::1:::2:::1::121 L :21:1111:::::::::31:6:::5:215::1 M ::2::::1::::1::::1:1:1::2:1:1::: N ::1:2:11:1:::::::::1:::::::::::: P :::3:41:11::::::::::::::::::::4: Q :1::::11::::::::::::::1::11:::1: R :11:::::::::::::::1:::3::21::21: S 1:::1:::31:426::1:11:213:::::1:1 T ::11:::12::1:1::::1::4:2::::::11 V ::2::::112:::::::41::2:1::1:1::: W ::::1::::::::::1:::::::::::::::: Y ::1:1::1::a:::::::::::::::::2::2 bits 6.7 6.0 5.4 4.7 * Relative 4.0 * * Entropy 3.4 * * (52.2 bits) 2.7 * ** * 2.0 * * * ***** *** ** * 1.3 * ** * * ******** ******* ***** 0.7 ******************************** 0.0 -------------------------------- Multilevel GXXGNPGXAAYSASKAAVXGLTRSLAXELAPX consensus A P S A FGL F E MR D sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GLVGNPGASAYSASKAAVEGLTRSLALELAPY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------------------- BUDC_KLETE 142 7.82e-23 GKIVNACSQA GHVGNPELAVYSSSKFAVRGLTQTAARDLAPL GITVNGFCPG NODG_RHIME 142 1.81e-21 GRIINVTSVA GAIGNPGQTNYCASKAGMIGFSKSLAQEIATR NITVNCVAPG FVT1_HUMAN 176 3.18e-21 GRIVFVSSQA GQLGLFGFTAYSASKFAIRGLAEALQMEVKPY NVYITVAYPP YRTP_BACSU 145 6.10e-20 GDIINISSTA GQRGAAVTSAYSASKFAVLGLTESLMQEVRKH NIRVSALTPS DHES_HUMAN 145 1.48e-19 GRVLVTGSVG GLMGLPFNDVYCASKFALEGLCESLAVLLLPF GVHLSLIECG DHB3_HUMAN 188 1.90e-19 GLILNISSGI ALFPWPLYSMYSASKAFVCAFSKALQEEYKAK EVIIQVLTPY BPHB_PSEPS 143 2.75e-19 GNVIFTISNA GFYPNGGGPLYTAAKQAIVGLVRELAFELAPY VRVNGVGPGG HDE_CANTR 457 3.51e-19 GRIINITSTS GIYGNFGQANYSSSKAGILGLSKTMAIEGAKN NIKVNIVAPH DHGB_BACME 150 1.30e-18 TVINMSSVHE WKIPWPLFVHYAASKGGMKLMTETLALEYAPK GIRVNNIGPG GUTD_ECOLI 144 1.84e-18 GRIIQINSKS GKVGSKHNSGYSAAKFGGVGLTQSLALDLAEY GITVHSLMLG AP27_MOUSE 139 1.84e-18 GSIVNVSSMV AHVTFPNLITYSSTKGAMTMLTKAMAMELGPH KIRVNSVNPT HDE_CANTR 153 3.27e-18 GRIVNTSSPA GLYGNFGQANYASAKSALLGFAETLAKEGAKY NIKANAIAPL YINL_LISMO 144 8.01e-18 GHIIATSSVA GLKAYPGGAVYGATKWAVRDLMEVLRMESAQE GTNIRTATIY DHII_HUMAN 173 1.24e-17 GSIVVVSSLA GKVAYPMVAAYSASKFALDGFFSSIRKEYSVS RVNVSITLCV 3BHD_COMTE 141 2.13e-17 GSIINMASVS SWLPIEQYAGYSASKAAVSALTRAAALSCRKQ GYAIRVNSIH BDH_HUMAN 198 5.50e-17 GRVVNISSML GRMANPARSPYCITKFGVEAFSDCLRYEMYPL GVKVSVVEPG DHMA_FLAS1 155 6.76e-17 ARIITIGSVN SFMAEPEAAAYVAAKGGVAMLTRAMAVDLARH GILVNMIAPG 2BHD_STREX 142 9.19e-17 GSIVNISSAA GLMGLALTSSYGASKWGVRGLSKLAAVELGTD RIRVNSVHPG HMTR_LEIMA 183 1.25e-16 YSIINMVDAM TNQPLLGYTIYTMAKGALEGLTRSAALELAPL QIRVNGVGPG RIDH_KLEAE 150 1.38e-16 GDIIFTAVIA GVVPVIWEPVYTASKFAVQAFVHTTRRQVAQY GVRVGAVLPG FIXR_BRAJA 179 1.38e-16 SIVNVTSIAG SRVHPFAGSAYATSKAALASLTRELAHDYAPH GIRVNAIAPG DHB2_HUMAN 222 4.52e-16 GRLVNVSSMG GGAPMERLASYGSSKAAVTMFSSVMRLELSKW GIKVASIQPG HDHA_ECOLI 149 6.03e-16 GVILTITSMA AENKNINMTSYASSKAAASHLVRNMAFDLGEK NIRVNGIAPG LIGD_PSEPA 147 4.25e-15 GHIVTVSSLG GFMGSALAGPYSAAKAASINLMEGYRQGLEKY GIGVSVCTPA ENTA_ECOLI 134 5.09e-15 GAIVTVASDA AHTPRIGMSAYGASKAALKSLALSVGLELAGS GVRCNVVSPG YURA_MYXXA 150 1.23e-14 RGHLVGVSSL AGFRGLPATRYSASKAFLSTFMESLRVDLRGT GVRVTCIYPG RFBB_NEIGO 155 1.46e-14 DLHGTDDLFT ETTPYAPSSPYSASKAAADHLVRAWQRTYRLP SIVSNCSNNY BA72_EUBSP 147 2.66e-14 GVIINTASVT GIFGSLSGVGYPASKASVIGLTHGLGREIIRK NIRVVGVAPG ADH_DROME 142 1.09e-13 GIICNIGSVT GFNAIYQVPVYSGTKAAVVNFTSSLAKLAPIT GVTAYTVNPG CSGA_MYXXA 78 3.57e-13 AHVTSRMGSL AANTDGGAYAYRMSKAALNMAVRSMSTDLRPE GFVTVLLHPG FABI_ECOLI 149 1.68e-11 SALLTLSYLG AERAIPNYNVMGLAKASLEANVRYMANAMGPE GVRVNAISAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GLVGNPGASAYSASKAAVEGLTRSLALELAPY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- BUDC_KLETE 7.8e-23 141_[2]_68 NODG_RHIME 1.8e-21 141_[2]_72 FVT1_HUMAN 3.2e-21 175_[2]_125 YRTP_BACSU 6.1e-20 144_[2]_62 DHES_HUMAN 1.5e-19 144_[2]_151 DHB3_HUMAN 1.9e-19 187_[2]_91 BPHB_PSEPS 2.7e-19 142_[2]_101 HDE_CANTR 3.3e-18 152_[2]_272_[2]_418 DHGB_BACME 1.3e-18 149_[2]_81 GUTD_ECOLI 1.8e-18 143_[2]_84 AP27_MOUSE 1.8e-18 138_[2]_74 YINL_LISMO 8e-18 143_[2]_73 DHII_HUMAN 1.2e-17 172_[2]_88 3BHD_COMTE 2.1e-17 140_[2]_81 BDH_HUMAN 5.5e-17 197_[2]_114 DHMA_FLAS1 6.8e-17 154_[2]_84 2BHD_STREX 9.2e-17 141_[2]_82 HMTR_LEIMA 1.2e-16 182_[2]_73 RIDH_KLEAE 1.4e-16 149_[2]_68 FIXR_BRAJA 1.4e-16 178_[2]_68 DHB2_HUMAN 4.5e-16 221_[2]_134 HDHA_ECOLI 6e-16 148_[2]_75 LIGD_PSEPA 4.3e-15 146_[2]_127 ENTA_ECOLI 5.1e-15 133_[2]_83 YURA_MYXXA 1.2e-14 149_[2]_77 RFBB_NEIGO 1.5e-14 154_[2]_160 BA72_EUBSP 2.7e-14 146_[2]_71 ADH_DROME 1.1e-13 141_[2]_82 CSGA_MYXXA 3.6e-13 77_[2]_57 FABI_ECOLI 1.7e-11 148_[2]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GLVGNPGASAYSASKAAVEGLTRSLALELAPY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GLVGNPGASAYSASKAAVEGLTRSLALELAPY width=32 seqs=31 BUDC_KLETE ( 142) GHVGNPELAVYSSSKFAVRGLTQTAARDLAPL 1 NODG_RHIME ( 142) GAIGNPGQTNYCASKAGMIGFSKSLAQEIATR 1 FVT1_HUMAN ( 176) GQLGLFGFTAYSASKFAIRGLAEALQMEVKPY 1 YRTP_BACSU ( 145) GQRGAAVTSAYSASKFAVLGLTESLMQEVRKH 1 DHES_HUMAN ( 145) GLMGLPFNDVYCASKFALEGLCESLAVLLLPF 1 DHB3_HUMAN ( 188) ALFPWPLYSMYSASKAFVCAFSKALQEEYKAK 1 BPHB_PSEPS ( 143) GFYPNGGGPLYTAAKQAIVGLVRELAFELAPY 1 HDE_CANTR ( 457) GIYGNFGQANYSSSKAGILGLSKTMAIEGAKN 1 DHGB_BACME ( 150) WKIPWPLFVHYAASKGGMKLMTETLALEYAPK 1 GUTD_ECOLI ( 144) GKVGSKHNSGYSAAKFGGVGLTQSLALDLAEY 1 AP27_MOUSE ( 139) AHVTFPNLITYSSTKGAMTMLTKAMAMELGPH 1 HDE_CANTR ( 153) GLYGNFGQANYASAKSALLGFAETLAKEGAKY 1 YINL_LISMO ( 144) GLKAYPGGAVYGATKWAVRDLMEVLRMESAQE 1 DHII_HUMAN ( 173) GKVAYPMVAAYSASKFALDGFFSSIRKEYSVS 1 3BHD_COMTE ( 141) SWLPIEQYAGYSASKAAVSALTRAAALSCRKQ 1 BDH_HUMAN ( 198) GRMANPARSPYCITKFGVEAFSDCLRYEMYPL 1 DHMA_FLAS1 ( 155) SFMAEPEAAAYVAAKGGVAMLTRAMAVDLARH 1 2BHD_STREX ( 142) GLMGLALTSSYGASKWGVRGLSKLAAVELGTD 1 HMTR_LEIMA ( 183) TNQPLLGYTIYTMAKGALEGLTRSAALELAPL 1 RIDH_KLEAE ( 150) GVVPVIWEPVYTASKFAVQAFVHTTRRQVAQY 1 FIXR_BRAJA ( 179) SRVHPFAGSAYATSKAALASLTRELAHDYAPH 1 DHB2_HUMAN ( 222) GGAPMERLASYGSSKAAVTMFSSVMRLELSKW 1 HDHA_ECOLI ( 149) AENKNINMTSYASSKAAASHLVRNMAFDLGEK 1 LIGD_PSEPA ( 147) GFMGSALAGPYSAAKAASINLMEGYRQGLEKY 1 ENTA_ECOLI ( 134) AHTPRIGMSAYGASKAALKSLALSVGLELAGS 1 YURA_MYXXA ( 150) AGFRGLPATRYSASKAFLSTFMESLRVDLRGT 1 RFBB_NEIGO ( 155) ETTPYAPSSPYSASKAAADHLVRAWQRTYRLP 1 BA72_EUBSP ( 147) GIFGSLSGVGYPASKASVIGLTHGLGREIIRK 1 ADH_DROME ( 142) GFNAIYQVPVYSGTKAAVVNFTSSLAKLAPIT 1 CSGA_MYXXA ( 78) AANTDGGAYAYRMSKAALNMAVRSMSTDLRPE 1 FABI_ECOLI ( 149) AERAIPNYNVMGLAKASLEANVRYMANAMGPE 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GLVGNPGASAYSASKAAVEGLTRSLALELAPY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 32 n= 8973 bayes= 7.59411 E= 1.2e-144 70 -304 -393 -107 -534 282 -406 -552 -436 -584 -496 -338 -451 -421 -438 33 -102 -496 134 -496 -68 -305 -204 40 155 -61 219 0 95 58 -267 -8 -291 119 41 -181 -52 -130 147 -271 -145 -187 -462 -386 131 -448 -285 39 -71 -25 241 107 -394 8 25 -300 21 117 -263 168 66 -356 -293 -255 -454 177 76 -446 -26 -432 -381 -239 281 -185 -37 -265 13 -436 -420 -383 -139 -241 -56 -46 -17 -147 -186 67 -178 38 25 224 -41 -145 -45 54 -217 -102 248 165 10 -210 -387 9 164 -65 -264 75 -65 9 -191 -317 300 -248 -323 -277 -241 -210 -283 17 -68 -307 -202 40 -32 140 82 -343 -115 28 13 114 48 119 -30 -54 -202 -131 147 -271 12 -276 -225 -31 64 30 -160 -286 -137 -5 105 63 -303 163 -36 -59 20 -41 -307 200 102 -269 -49 -163 -314 -145 -168 -75 -145 -301 -245 -15 102 -115 -203 183 135 -41 -311 14 86 -223 -303 -231 -261 -8 75 -48 -211 -107 30 110 104 -175 -51 53 -55 109 -284 -259 -735 -508 -715 -725 -189 -735 -324 -566 -670 -508 22 -574 -668 -545 -619 -626 -645 -620 -234 512 23 286 -532 -520 -521 73 -463 -524 -491 -545 -476 -404 -41 -430 -70 274 81 -138 -507 -517 261 -61 -387 -340 -317 -156 -323 -139 -341 -189 31 -345 -432 -310 -346 91 -112 -193 -306 -355 100 -268 -596 -609 -576 -417 -529 -598 -590 -612 -535 -455 -469 -496 -558 330 118 -501 -553 -581 -572 -446 -600 -565 -643 -626 -470 -557 423 -622 -560 -486 -552 -478 -203 -565 -529 -649 -497 -576 211 -263 -571 -562 275 48 -482 -515 -559 -538 -480 -472 -480 8 -545 -70 -357 -443 265 -441 252 -242 -594 -576 73 124 -522 -551 -585 -565 -496 -494 -481 -488 -557 12 -351 -433 -528 -572 -71 -187 -492 -414 -225 -153 -298 86 -381 155 174 -370 -403 -316 -377 -87 -243 209 -266 -255 -68 114 34 117 -347 -351 -143 53 53 -11 -271 -7 -288 51 124 58 20 2 -324 -271 39 -317 -41 -167 -363 201 166 -354 -153 -144 199 68 -320 -123 -214 9 -59 -355 -346 -297 -190 -360 -647 -564 277 -659 -454 -216 -539 276 38 -56 -531 -425 -507 -523 -441 -319 -363 -375 -30 125 -474 -435 -20 -468 -326 -205 -387 -264 163 -327 -416 -323 -388 144 267 106 -310 -309 -292 -340 -44 207 -383 -380 168 -381 159 -145 -301 -192 -318 119 236 56 -232 -374 -350 -301 58 115 -262 20 -297 -69 -192 -257 -176 -130 -234 -24 -321 -145 -228 227 136 -43 -304 9 6 -200 -497 -418 -219 -470 -306 -31 -386 233 281 -381 -405 -315 -378 -324 -67 -79 151 16 227 -245 -435 -371 -483 -54 -343 -468 -259 -471 12 -364 -445 158 203 -69 -323 -393 -450 -456 -274 -257 -247 -38 66 -376 78 -65 88 89 162 -17 -316 162 123 -208 -53 50 -301 17 -164 -570 209 326 -592 -152 -333 -531 -269 -63 -459 -327 -412 34 -381 -92 -80 -499 -563 -496 -147 132 -489 -410 -220 -63 -295 39 -377 216 121 -367 -399 -311 -372 -88 -241 34 -262 237 171 -280 -208 -26 -344 27 -150 -90 49 -143 -270 -171 -42 -92 150 11 -204 -329 -322 10 -136 -311 -205 39 -350 -62 -147 -90 176 -143 -275 -168 285 118 40 -182 19 -133 -327 -276 -261 -300 -42 81 -19 -352 256 -346 125 -12 -269 -10 -41 48 -32 11 18 -341 146 261 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GLVGNPGASAYSASKAAVEGLTRSLALELAPY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 32 nsites= 31 E= 1.2e-144 0.225806 0.000000 0.000000 0.032258 0.000000 0.580645 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.096774 0.032258 0.000000 0.032258 0.000000 0.064516 0.000000 0.000000 0.064516 0.129032 0.064516 0.096774 0.064516 0.096774 0.161290 0.000000 0.032258 0.000000 0.064516 0.064516 0.000000 0.032258 0.032258 0.032258 0.000000 0.032258 0.000000 0.000000 0.000000 0.096774 0.000000 0.000000 0.064516 0.032258 0.064516 0.161290 0.096774 0.000000 0.032258 0.064516 0.000000 0.064516 0.193548 0.000000 0.096774 0.193548 0.000000 0.000000 0.000000 0.000000 0.354839 0.032258 0.000000 0.032258 0.000000 0.000000 0.000000 0.290323 0.000000 0.032258 0.000000 0.064516 0.000000 0.000000 0.000000 0.032258 0.000000 0.032258 0.032258 0.032258 0.032258 0.000000 0.096774 0.000000 0.129032 0.032258 0.225806 0.032258 0.000000 0.032258 0.096774 0.000000 0.032258 0.064516 0.096774 0.129032 0.000000 0.000000 0.064516 0.129032 0.064516 0.000000 0.096774 0.032258 0.096774 0.000000 0.000000 0.354839 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.064516 0.000000 0.000000 0.064516 0.032258 0.290323 0.032258 0.000000 0.000000 0.129032 0.032258 0.096774 0.064516 0.064516 0.032258 0.032258 0.000000 0.032258 0.032258 0.000000 0.129032 0.000000 0.000000 0.032258 0.064516 0.129032 0.000000 0.000000 0.000000 0.096774 0.064516 0.064516 0.000000 0.096774 0.032258 0.032258 0.064516 0.064516 0.000000 0.129032 0.258065 0.000000 0.032258 0.000000 0.000000 0.032258 0.000000 0.032258 0.000000 0.000000 0.000000 0.032258 0.096774 0.000000 0.000000 0.258065 0.161290 0.064516 0.000000 0.032258 0.225806 0.000000 0.000000 0.000000 0.000000 0.096774 0.032258 0.032258 0.000000 0.032258 0.032258 0.096774 0.096774 0.000000 0.032258 0.096774 0.032258 0.193548 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.967742 0.129032 0.096774 0.000000 0.000000 0.000000 0.161290 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.032258 0.419355 0.096774 0.032258 0.000000 0.000000 0.612903 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.032258 0.000000 0.032258 0.064516 0.000000 0.000000 0.000000 0.000000 0.193548 0.032258 0.000000 0.000000 0.000000 0.225806 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.645161 0.129032 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.483871 0.000000 0.000000 0.000000 0.258065 0.129032 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.032258 0.000000 0.000000 0.064516 0.000000 0.645161 0.000000 0.000000 0.000000 0.064516 0.225806 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.064516 0.000000 0.000000 0.000000 0.000000 0.064516 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.096774 0.000000 0.290323 0.096774 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.387097 0.000000 0.000000 0.064516 0.032258 0.064516 0.129032 0.000000 0.000000 0.000000 0.096774 0.064516 0.096774 0.000000 0.032258 0.000000 0.032258 0.129032 0.096774 0.064516 0.096774 0.000000 0.000000 0.161290 0.000000 0.032258 0.000000 0.000000 0.419355 0.064516 0.000000 0.000000 0.032258 0.129032 0.064516 0.000000 0.000000 0.000000 0.064516 0.032258 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.290323 0.000000 0.000000 0.000000 0.000000 0.612903 0.032258 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.096774 0.032258 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.096774 0.000000 0.000000 0.000000 0.000000 0.193548 0.354839 0.193548 0.000000 0.000000 0.000000 0.000000 0.032258 0.258065 0.000000 0.000000 0.064516 0.000000 0.161290 0.032258 0.000000 0.000000 0.000000 0.064516 0.290323 0.096774 0.000000 0.000000 0.000000 0.000000 0.193548 0.032258 0.000000 0.064516 0.000000 0.064516 0.000000 0.000000 0.000000 0.032258 0.000000 0.032258 0.000000 0.000000 0.000000 0.322581 0.161290 0.064516 0.000000 0.032258 0.129032 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.483871 0.225806 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.032258 0.032258 0.032258 0.548387 0.000000 0.000000 0.000000 0.000000 0.064516 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.096774 0.225806 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.064516 0.000000 0.032258 0.032258 0.096774 0.193548 0.096774 0.032258 0.000000 0.096774 0.129032 0.000000 0.032258 0.129032 0.000000 0.032258 0.032258 0.000000 0.225806 0.548387 0.000000 0.032258 0.000000 0.000000 0.000000 0.064516 0.000000 0.000000 0.000000 0.032258 0.000000 0.032258 0.032258 0.000000 0.000000 0.000000 0.032258 0.032258 0.000000 0.000000 0.000000 0.064516 0.000000 0.064516 0.000000 0.451613 0.064516 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.096774 0.000000 0.161290 0.419355 0.000000 0.000000 0.032258 0.000000 0.129032 0.000000 0.032258 0.064516 0.032258 0.000000 0.000000 0.032258 0.000000 0.161290 0.064516 0.000000 0.000000 0.000000 0.032258 0.032258 0.000000 0.000000 0.064516 0.000000 0.064516 0.000000 0.032258 0.193548 0.032258 0.000000 0.000000 0.354839 0.064516 0.064516 0.000000 0.064516 0.032258 0.000000 0.000000 0.000000 0.000000 0.032258 0.096774 0.032258 0.000000 0.129032 0.000000 0.129032 0.096774 0.000000 0.032258 0.032258 0.032258 0.032258 0.064516 0.064516 0.000000 0.032258 0.193548 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GLVGNPGASAYSASKAAVEGLTRSLALELAPY MEME-2 regular expression -------------------------------------------------------------------------------- [GA]XX[GP]NPGX[AS]AYSA[SA]K[AF][AG][VL]XG[LF]T[RE]S[LM][AR]X[ED]LAPX -------------------------------------------------------------------------------- Time 20.72 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 2BHD_STREX 1.70e-26 6_[1(5.62e-17)]_106_[2(9.19e-17)]_\ 82 3BHD_COMTE 8.32e-28 6_[1(1.16e-17)]_105_[2(2.13e-17)]_\ 81 ADH_DROME 8.34e-18 6_[1(3.42e-11)]_106_[2(1.09e-13)]_\ 82 AP27_MOUSE 5.94e-30 7_[1(9.65e-19)]_102_[2(1.84e-18)]_\ 74 BA72_EUBSP 4.62e-25 6_[1(5.89e-18)]_111_[2(2.66e-14)]_\ 71 BDH_HUMAN 7.21e-27 55_[1(2.04e-17)]_113_[2(5.50e-17)]_\ 114 BPHB_PSEPS 5.08e-26 5_[1(4.84e-14)]_108_[2(2.75e-19)]_\ 101 BUDC_KLETE 1.08e-35 2_[1(3.60e-20)]_110_[2(7.82e-23)]_\ 68 DHES_HUMAN 3.24e-26 2_[1(3.88e-14)]_113_[2(1.48e-19)]_\ 151 DHGB_BACME 4.46e-30 7_[1(8.70e-19)]_113_[2(1.30e-18)]_\ 81 DHII_HUMAN 1.69e-32 34_[1(2.52e-22)]_109_[2(1.24e-17)]_\ 88 DHMA_FLAS1 6.41e-28 14_[1(2.42e-18)]_111_[2(6.76e-17)]_\ 84 ENTA_ECOLI 2.82e-27 5_[1(1.75e-19)]_99_[2(5.09e-15)]_83 FIXR_BRAJA 2.34e-26 36_[1(4.28e-17)]_113_[2(1.38e-16)]_\ 68 GUTD_ECOLI 7.31e-25 2_[1(1.24e-13)]_112_[2(1.84e-18)]_\ 84 HDE_CANTR 1.10e-34 8_[1(1.90e-21)]_115_[2(3.27e-18)]_\ 138_[1(4.87e-24)]_105_[2(3.51e-19)]_418 HDHA_ECOLI 4.33e-29 11_[1(2.00e-20)]_108_[2(6.03e-16)]_\ 75 LIGD_PSEPA 1.21e-23 6_[1(6.46e-16)]_111_[2(4.25e-15)]_\ 127 NODG_RHIME 1.05e-29 6_[1(1.74e-15)]_106_[2(1.81e-21)]_\ 72 RIDH_KLEAE 3.02e-29 14_[1(6.40e-20)]_106_[2(1.38e-16)]_\ 68 YINL_LISMO 1.32e-32 5_[1(4.39e-22)]_109_[2(8.01e-18)]_\ 73 YRTP_BACSU 1.76e-31 6_[1(8.70e-19)]_109_[2(6.10e-20)]_\ 62 CSGA_MYXXA 3.82e-10 77_[2(3.57e-13)]_57 DHB2_HUMAN 2.01e-25 82_[1(5.62e-17)]_110_[2(4.52e-16)]_\ 134 DHB3_HUMAN 1.45e-30 48_[1(1.31e-18)]_110_[2(1.90e-19)]_\ 91 DHCA_HUMAN 5.65e-14 4_[1(4.22e-15)]_149_[2(6.30e-06)]_\ 62 FABI_ECOLI 3.57e-09 148_[2(1.68e-11)]_82 FVT1_HUMAN 1.02e-30 32_[1(4.69e-17)]_114_[2(3.18e-21)]_\ 125 HMTR_LEIMA 3.88e-26 6_[1(7.37e-17)]_147_[2(1.25e-16)]_\ 73 MAS1_AGRRA 4.82e-13 245_[1(1.08e-14)]_107_[2(6.85e-06)]_\ 63 PCR_PEA 6.15e-14 86_[1(1.86e-17)]_284 RFBB_NEIGO 5.44e-20 6_[1(7.54e-13)]_119_[2(1.46e-14)]_\ 160 YURA_MYXXA 5.76e-12 149_[2(1.23e-14)]_77 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (2) found. ******************************************************************************** CPU: sh-ln04.stanford.edu ********************************************************************************