# The MEME Suite of motif-based sequence analysis tools. # # version 4.7.0 (Release date: 4 PDT 20) # # Program: mhmmscan # File contents: Database search results # Motif file: common/crp0.meme.html # HMM file: mhmm/crp0.linear.mhmm # Sequence file: common/crp0.fasta # Create date: Tue Nov 1 11:41:26 2011 # # For further information on how to interpret these results or to get a copy # of the MEME Suite software, please access http://meme-suite.org . # # If you use MCAST in your research, please cite # # Timothy Bailey and William Stafford Noble, # "Searching for statistically significant regulatory modules", # Bioinformatics (Proceedings of the European Conference on Computational Biology), # 19(Suppl. 2):ii16-ii25, 2003. # # ***************************************************************************** ID E-value Score Start End Description ----------------------------------------------------------------------------------------------------------------------------------- ce1cg nan 31.26 24 84 ara nan 20.39 10 77 pbr322 nan 19.54 93 102 ompa nan 18.98 53 78 gale nan 17.91 45 65 bglr1 nan 17.35 79 101 tnaa nan 16.14 24 101 deop2 nan 16.11 10 28 crp nan 16.08 66 84 ilv nan 15.89 6 62 male nan 15.48 17 36 lac nan 15.11 12 32 tdc nan 13.53 79 99 gale nan 13.28 1 41 pbr322 nan 13.14 17 23 uxu1 nan 12.93 20 46 malk nan 11.66 88 104 malk nan 11.52 6 40 lac nan 11.21 95 105 malk nan 11.02 52 64 deop2 nan 10.89 63 75 gale nan 10.19 67 71 cya nan 10.19 24 28 ----------------------------------------------------------------------------------------------------------------------------------- Derived parameters for E-value calculations type of distribution: Extreme Value source of distribution: Actual sequence scores status: Too few (23 < 200) scores to estimate E-values. number of matches: 23 db length: 1890 Program parameters for mhmmscan HMM file: mhmm/crp0.linear.mhmm Sequence file: common/crp0.fasta Paths: single Minimum match score: 10 Partial motif matches are: allowed E-value threshold for scores: 10 Background: nrdb Score matrix for pseudocount frequencies: PAM 1 Beta (weight on pseudocount frequencies): 1.00 Zero spacer emission log-odds: false Fancy output format: false Actual command line: mhmmscan --text mhmm/crp0.linear.mhmm common/crp0.fasta CPU: cantor Total time 0.01 secs. Overhead 0.00 secs. 18 sequences 0.3 millisec/seq 2.4 microsec/character