<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!-- Begin document body -->
<cis-element-search
  xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
  xsi:schemaLocation="http://zlab.bu.edu/schema/cisml cisml.xsd"
  xmlns="http://zlab.bu.edu/schema/cisml"
  xmlns:mem="http://noble.gs.washington.edu/meme"
>
<program-name>fimo</program-name>
<parameters>
<pattern-file>motiph/MCM1.meme.html</pattern-file>
<sequence-file>motiph/spiked.fasta</sequence-file>
<site-pvalue-cutoff>1e-06</site-pvalue-cutoff>
<sequence-filtering on-off="off"/>
</parameters>
<pattern accession="+1" name="+1">
<scanned-sequence accession="Scer" name="Scer" length="2666">
<matched-element start="121" stop="133" score="1233" pvalue="1.8052e-08">
<sequence>TTTCCTAAATGGG</sequence>
</matched-element>
<matched-element start="1930" stop="1918" score="1234" pvalue="1.94547e-08">
<sequence>CCCATTTAGGAAA</sequence>
</matched-element>
</scanned-sequence>
</pattern>
</cis-element-search>
