<dreme version="4.10.2" release="Fri Sep 11 13:36:30 2015 +1000">
  <model>
    <command_line>dreme -oc results/dreme1 -v 1 -noxslt -p Klf1-200-100.s</command_line>
    <positives name="Klf1-200-100" count="169" file="Klf1-200-100.s" last_mod_date="Fri May 02 13:01:55 AEST 2014" />
    <negatives name="shuffled positive sequences" count="169" from="shuffled"/>
    <alphabet name="DNA" like="dna">
      <letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
      <letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
      <letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
      <letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
      <letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
      <letter id="V" symbol="V" equals="ACG" name="Not T"/>
      <letter id="H" symbol="H" equals="ACT" name="Not G"/>
      <letter id="D" symbol="D" equals="AGT" name="Not C"/>
      <letter id="B" symbol="B" equals="CGT" name="Not A"/>
      <letter id="M" symbol="M" equals="AC" name="Amino"/>
      <letter id="R" symbol="R" equals="AG" name="Purine"/>
      <letter id="W" symbol="W" equals="AT" name="Weak"/>
      <letter id="S" symbol="S" equals="CG" name="Strong"/>
      <letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
      <letter id="K" symbol="K" equals="GT" name="Keto"/>
    </alphabet>
    <strands>both</strands>
    <background A="0.244" C="0.253" G="0.250" T="0.253" from="dataset"/>
    <stop evalue="0.05"/>
    <ngen>100</ngen>
    <add_pv_thresh>0.01</add_pv_thresh>
    <seed>1</seed>
    <host>IMB12-010665</host>
    <when>Fri Sep 11 18:48:29 AEST 2015</when>
  </model>
  <motifs>
    <motif id="m01" seq="ACRCCC" length="6" nsites="71" p="63" n="11" pvalue="1.7e-012" evalue="2.9e-008" unerased_evalue="2.9e-008">
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="0.661972" C="0.000000" G="0.338028" T="0.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <match seq="ACACCC" p="42" n="9" pvalue="2.6e-007" evalue="4.6e-003"/>
      <match seq="ACGCCC" p="23" n="2" pvalue="4.9e-006" evalue="8.7e-002"/>
    </motif>
    <motif id="m02" seq="TTATCW" length="6" nsites="56" p="51" n="7" pvalue="4.0e-011" evalue="6.8e-007" unerased_evalue="6.8e-007">
      <pos A="0.000000" C="0.000000" G="0.000000" T="1.000000"/>
      <pos A="0.000000" C="0.000000" G="0.000000" T="1.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="0.000000" T="1.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="0.357143" C="0.000000" G="0.000000" T="0.642857"/>
      <match seq="TTATCT" p="34" n="4" pvalue="7.0e-008" evalue="1.2e-003"/>
      <match seq="TTATCA" p="20" n="3" pvalue="1.6e-004" evalue="2.7e+000"/>
    </motif>
  </motifs>
  <run_time cpu="2.33" real="2.33" stop="evalue"/>
</dreme>
