Index of /kundaje/marinovg/oak/various/programs/meme_4.11.2/src

	Name	Last modified	Size	Description
	Parent Directory		-
	Makefile	2016-12-16 16:51	333K
	Makefile.am	2016-10-18 00:14	15K
	Makefile.in	2016-10-24 19:30	389K
	aa.h	2016-06-17 19:43	2.4K
	align.h	2016-09-28 21:53	843
	alignment.c	2016-09-28 21:53	36K
	alignment.h	2016-09-28 21:53	9.4K
	alph-in.c	2016-10-24 19:29	48K
	alph-in.h	2016-09-28 21:53	2.1K
	alphabet.c	2016-09-28 21:53	73K
	alphabet.h	2016-09-28 21:53	22K
	alphtype	2016-12-16 17:52	170K
	alphtype-alphtype.o	2016-12-16 17:52	2.2K
	alphtype.c	2016-09-28 21:53	1.5K
	ama	2016-12-16 17:52	532K
	ama-ama.o	2016-12-16 17:52	34K
	ama.c	2016-09-28 21:53	39K
	ame	2016-12-16 17:53	502K
	ame-ame.o	2016-12-16 17:53	78K
	ame-fisher_exact.o	2016-12-16 17:53	19K
	ame-ramen_scan.o	2016-12-16 17:53	6.4K
	ame.c	2016-10-18 00:14	74K
	ame.h	2016-09-28 21:53	5.1K
	array-list.c	2016-09-28 21:53	16K
	array-list.h	2016-09-28 21:53	6.2K
	array.c	2016-09-28 21:53	34K
	array.h	2016-09-28 21:53	15K
	banner.c	2016-09-28 21:53	2.1K
	banner.h	2016-06-17 19:43	219
	beadstring-xml.h	2016-06-17 19:43	445
	beadstring.c	2016-09-28 21:53	40K
	beadstring.h	2016-09-28 21:53	1.9K
	binary-search.c	2016-06-17 19:43	953
	binary-search.h	2016-06-17 19:43	1.1K
	binomial.c	2016-06-17 19:43	5.0K
	binomial.h	2016-06-17 19:43	1.5K
	branching_search.c	2016-09-28 21:53	24K
	buffer.c	2016-06-17 19:43	23K
	buffer.h	2016-06-17 19:43	9.9K
	build-hmm.c	2016-09-28 21:53	48K
	build-hmm.h	2016-06-17 19:43	1.9K
	calculate_p_y.c	2016-10-18 00:14	21K
	calculate_p_y.h	2016-10-18 00:14	3.1K
	centrimo	2016-12-16 17:53	478K
	centrimo-centrimo.o	2016-12-16 17:53	62K
	centrimo-fisher_exact.o	2016-12-16 17:53	19K
	centrimo.c	2016-09-28 21:53	81K
	ceqlogo	2016-12-16 17:53	386K
	ceqlogo-ceqlogo.o	2016-12-16 17:53	42K
	ceqlogo.c	2016-10-24 19:22	56K
	ceqlogo.h	2016-06-17 19:43	3.1K
	cisml-dtd.h	2016-06-17 19:43	2.1K
	cisml-sax.c	2016-09-28 21:53	20K
	cisml-sax.h	2016-06-17 19:43	2.9K
	cisml.c	2016-09-28 21:53	118K
	cisml.h	2016-09-28 21:53	52K
	clustalw-io.c	2016-06-17 19:43	15K
	clustalw-io.h	2016-06-17 19:43	1.6K
	clustalw2fasta	2016-12-16 17:53	258K
	clustalw2fasta-clustalw2fasta.o	2016-12-16 17:53	5.8K
	clustalw2fasta.c	2016-09-28 21:53	4.1K
	clustalw2phylip	2016-12-16 17:53	229K
	clustalw2phylip-clustalw2phylip.o	2016-12-16 17:53	34K
	clustalw2phylip.c	2016-09-28 21:53	1.3K
	compute-prior-dist	2016-12-16 17:54	210K
	compute-prior-dist.c	2016-09-28 21:53	3.2K
	compute-uniform-priors	2016-12-16 17:54	210K
	compute-uniform-priors.c	2016-06-17 19:43	2.4K
	compute_prior_dist-compute-prior-dist.o	2016-12-16 17:54	4.1K
	compute_uniform_priors-compute-uniform-priors.o	2016-12-16 17:54	3.0K
	create-priors	2016-12-16 17:54	228K
	create-priors.c	2016-09-28 21:53	24K
	create_priors-create-priors.o	2016-12-16 17:54	17K
	curves.h	2016-06-17 19:43	1.9K
	data-block-reader.c	2016-09-28 21:53	12K
	data-block-reader.h	2016-06-17 19:43	6.5K
	data-block.c	2016-09-28 21:53	5.4K
	data-block.h	2016-09-28 21:53	4.4K
	diagram.c	2016-06-17 19:43	14K
	diagram.h	2016-06-17 19:43	959
	dir.h	2016-12-16 17:30	248
	discretize.c	2016-10-18 00:14	44K
	display.c	2016-10-18 00:14	82K
	display.h	2016-06-17 19:43	3.5K
	display_globals.h	2016-06-17 19:43	273
	dp.c	2016-06-17 19:43	24K
	dp.h	2016-06-17 19:43	3.7K
	dpalign.c	2016-09-28 21:53	19K
	dpalign.h	2016-09-28 21:53	1.1K
	draw-mhmm.c	2016-09-28 21:53	13K
	dreme-sax.c	2016-09-28 21:53	43K
	dreme-sax.h	2016-09-28 21:53	14K
	em.c	2016-10-18 00:14	7.5K
	em.h	2016-09-28 21:53	1.4K
	empirical-qvalue.c	2016-09-28 21:53	9.3K
	empirical-qvalue.h	2016-06-17 19:43	1.0K
	eps2png.c	2016-06-17 19:43	4.3K
	eps2png.h	2016-06-17 19:43	846
	evomodel.c	2016-09-28 21:53	42K
	evomodel.h	2016-09-28 21:53	7.2K
	exec_parallel.c	2016-09-28 21:53	5.2K
	fasta-get-markov	2016-12-16 17:54	183K
	fasta-get-markov.c	2016-10-18 00:14	27K
	fasta-io.c	2016-09-28 21:53	19K
	fasta-io.h	2016-09-28 21:53	2.9K
	fasta-shuffle-letters	2016-12-16 17:54	180K
	fasta-shuffle-letters.c	2016-09-28 21:53	17K
	fasta_get_markov-fasta-get-markov.o	2016-12-16 17:54	22K
	fasta_shuffle_letters-fasta-shuffle-letters.o	2016-12-16 17:54	15K
	fasta_shuffle_letters-ushuffle.o	2016-12-16 17:54	6.7K
	filters/	2016-12-16 16:51	-
	fimo	2016-12-16 17:54	550K
	fimo-fimo-output.o	2016-12-16 17:54	28K
	fimo-fimo.o	2016-12-16 17:54	25K
	fimo-html-string.h	2016-09-28 21:53	4.0K
	fimo-output.c	2016-09-28 21:53	24K
	fimo-output.h	2016-09-28 21:53	3.1K
	fimo.c	2016-10-24 19:22	30K
	fimo.h	2016-09-28 21:53	2.6K
	fisher_exact	2016-12-16 17:55	56K
	fisher_exact-fisher_exact.o	2016-12-16 17:54	25K
	fisher_exact.c	2016-09-28 21:53	9.2K
	fisher_exact.h	2016-06-17 19:43	1.2K
	fitevd	2016-12-16 17:55	80K
	fitevd-fitevd.o	2016-12-16 17:55	53K
	fitevd.c	2016-09-28 21:53	74K
	fitevd.h	2016-09-28 21:53	11K
	gendb	2016-12-16 17:55	222K
	gendb-gendb.o	2016-12-16 17:55	51K
	gendb.c	2016-09-28 21:53	114K
	gendb.h	2016-09-28 21:53	560
	general.h	2016-06-17 19:43	5.2K
	getsize	2016-12-16 17:55	184K
	getsize.c	2016-09-28 21:53	16K
	getsize.o	2016-12-16 17:55	15K
	glam2	2016-12-16 17:56	456K
	glam2-glam2_alphabet.o	2016-12-16 17:55	6.1K
	glam2-glam2_args.o	2016-12-16 17:55	13K
	glam2-glam2_column_sample.o	2016-12-16 17:55	19K
	glam2-glam2_dirichlet.o	2016-12-16 17:55	20K
	glam2-glam2_dna_prior.o	2016-12-16 17:55	1.8K
	glam2-glam2_fasta.o	2016-12-16 17:55	8.0K
	glam2-glam2_glam2.o	2016-12-16 17:55	12K
	glam2-glam2_glam2_aln.o	2016-12-16 17:55	4.3K
	glam2-glam2_init.o	2016-12-16 17:55	11K
	glam2-glam2_output.o	2016-12-16 17:55	10K
	glam2-glam2_recode3_20comp.o	2016-12-16 17:55	4.9K
	glam2-glam2_site_sample.o	2016-12-16 17:56	14K
	glam2-glam2_util.o	2016-12-16 17:56	25K
	glam2_alignment.c	2016-06-17 19:43	1.6K
	glam2_alignment.h	2016-06-17 19:43	793
	glam2_alphabet.c	2016-06-17 19:43	3.2K
	glam2_alphabet.h	2016-06-17 19:43	776
	glam2_args.c	2016-09-28 21:53	8.6K
	glam2_args.h	2016-06-17 19:43	1.1K
	glam2_column_sample.c	2016-09-28 21:53	12K
	glam2_column_sample.h	2016-06-17 19:43	166
	glam2_convolve.h	2016-06-17 19:43	596
	glam2_dirichlet.c	2016-06-17 19:43	8.9K
	glam2_dirichlet.h	2016-06-17 19:43	3.7K
	glam2_dna_prior.c	2016-06-17 19:43	155
	glam2_dna_prior.h	2016-06-17 19:43	124
	glam2_fasta.c	2016-06-17 19:43	4.2K
	glam2_fasta.h	2016-06-17 19:43	1.9K
	glam2_glam2.c	2016-09-28 21:53	7.1K
	glam2_glam2.h	2016-06-17 19:43	2.1K
	glam2_glam2_aln.c	2016-06-17 19:43	1.7K
	glam2_glam2_aln.h	2016-06-17 19:43	1.9K
	glam2_glam2format.c	2016-06-17 19:43	9.7K
	glam2_glam2mask.c	2016-06-17 19:43	2.4K
	glam2_heap.c	2016-06-17 19:43	1.0K
	glam2_heap.h	2016-06-17 19:43	956
	glam2_init.c	2016-09-28 21:53	5.8K
	glam2_init.h	2016-06-17 19:43	97
	glam2_motif.c	2016-06-17 19:43	1.9K
	glam2_motif.h	2016-06-17 19:43	499
	glam2_output.c	2016-09-28 21:53	7.2K
	glam2_output.h	2016-06-17 19:43	262
	glam2_recode3_20comp.c	2016-06-17 19:43	4.6K
	glam2_recode3_20comp.h	2016-06-17 19:43	138
	glam2_scan.c	2016-09-28 21:53	8.3K
	glam2_scan.h	2016-09-28 21:53	1.1K
	glam2_scan_args.c	2016-09-28 21:53	4.1K
	glam2_scan_args.h	2016-09-28 21:53	697
	glam2_scan_init.c	2016-09-28 21:53	4.3K
	glam2_scan_init.h	2016-09-28 21:53	122
	glam2_scan_output.c	2016-06-17 19:43	1.0K
	glam2_scan_output.h	2016-06-17 19:43	174
	glam2_site_sample.c	2016-06-17 19:43	14K
	glam2_site_sample.h	2016-06-17 19:43	301
	glam2_util.c	2016-09-28 21:53	13K
	glam2_util.h	2016-09-28 21:53	6.1K
	glam2_version.h	2016-06-17 19:43	7
	glam2format	2016-12-16 17:56	67K
	glam2format-glam2_alignment.o	2016-12-16 17:56	3.0K
	glam2format-glam2_fasta.o	2016-12-16 17:56	8.0K
	glam2format-glam2_glam2format.o	2016-12-16 17:56	12K
	glam2format-glam2_util.o	2016-12-16 17:56	25K
	glam2mask	2016-12-16 17:56	63K
	glam2mask-glam2_alignment.o	2016-12-16 17:56	3.0K
	glam2mask-glam2_fasta.o	2016-12-16 17:56	8.0K
	glam2mask-glam2_glam2mask.o	2016-12-16 17:56	4.5K
	glam2mask-glam2_util.o	2016-12-16 17:56	25K
	glam2scan	2016-12-16 17:57	95K
	glam2scan-glam2_alignment.o	2016-12-16 17:56	3.0K
	glam2scan-glam2_alphabet.o	2016-12-16 17:56	6.1K
	glam2scan-glam2_dirichlet.o	2016-12-16 17:56	20K
	glam2scan-glam2_dna_prior.o	2016-12-16 17:56	1.8K
	glam2scan-glam2_fasta.o	2016-12-16 17:56	8.0K
	glam2scan-glam2_heap.o	2016-12-16 17:56	2.1K
	glam2scan-glam2_motif.o	2016-12-16 17:56	3.9K
	glam2scan-glam2_recode3_20comp.o	2016-12-16 17:57	4.9K
	glam2scan-glam2_scan.o	2016-12-16 17:56	13K
	glam2scan-glam2_scan_args.o	2016-12-16 17:56	8.7K
	glam2scan-glam2_scan_init.o	2016-12-16 17:57	7.5K
	glam2scan-glam2_scan_output.o	2016-12-16 17:57	2.9K
	glam2scan-glam2_util.o	2016-12-16 17:57	25K
	gomo	2016-12-16 17:57	544K
	gomo-gomo.o	2016-12-16 17:57	66K
	gomo-gomo_highlight.o	2016-12-16 17:57	35K
	gomo-merger.o	2016-12-16 17:57	4.7K
	gomo-ranksum_test.o	2016-12-16 17:57	13K
	gomo-read_csv.o	2016-12-16 17:57	5.0K
	gomo.c	2016-09-28 21:53	71K
	gomo_highlight	2016-12-16 17:57	70K
	gomo_highlight-gomo_highlight.o	2016-12-16 17:57	35K
	gomo_highlight.c	2016-09-28 21:53	27K
	gomo_highlight.h	2016-06-17 19:43	926
	hash.h	2016-06-17 19:43	1.3K
	hash_table.c	2016-06-17 19:43	13K
	hash_table.h	2016-06-17 19:43	2.1K
	hash_table_string.h	2016-06-17 19:43	2.3K
	heap.c	2016-06-17 19:43	13K
	heap.h	2016-06-17 19:43	2.4K
	histogram.h	2016-06-17 19:43	3.0K
	html-data.c	2016-09-28 21:53	29K
	html-data.h	2016-06-17 19:43	2.8K
	html-monolith.c	2016-09-28 21:53	10K
	html-monolith.h	2016-09-28 21:53	2.1K
	ic.h	2016-06-17 19:43	606
	import-html-template	2016-12-16 17:57	71K
	import-html-template.c	2016-09-28 21:53	1.5K
	import_html_template-import-html-template.o	2016-12-16 17:57	3.9K
	init.c	2016-10-24 19:22	43K
	io.c	2016-06-17 19:43	3.7K
	io.h	2016-06-17 19:43	785
	json-checker.c	2016-09-28 21:53	35K
	json-checker.h	2016-09-28 21:53	7.2K
	json-reader.c	2016-09-28 21:53	32K
	json-reader.h	2016-06-17 19:43	2.0K
	json-writer.c	2016-09-28 21:53	23K
	json-writer.h	2016-09-28 21:53	5.3K
	justlike.c	2016-06-17 19:43	2.0K
	karlin.c	2016-06-17 19:43	6.4K
	karlin.h	2016-06-17 19:43	2.3K
	libcommon.la	2016-12-16 17:52	888
	libcommon_la-alignment.lo	2016-12-16 17:39	318
	libcommon_la-alignment.o	2016-12-16 17:39	32K
	libcommon_la-alph-in.lo	2016-12-16 17:40	312
	libcommon_la-alph-in.o	2016-12-16 17:40	36K
	libcommon_la-alphabet.lo	2016-12-16 17:40	315
	libcommon_la-alphabet.o	2016-12-16 17:40	69K
	libcommon_la-array-list.lo	2016-12-16 17:41	321
	libcommon_la-array-list.o	2016-12-16 17:41	15K
	libcommon_la-array.lo	2016-12-16 17:40	306
	libcommon_la-array.o	2016-12-16 17:40	31K
	libcommon_la-binary-search.lo	2016-12-16 17:41	330
	libcommon_la-binary-search.o	2016-12-16 17:41	1.5K
	libcommon_la-binomial.lo	2016-12-16 17:41	315
	libcommon_la-binomial.o	2016-12-16 17:41	6.3K
	libcommon_la-buffer.lo	2016-12-16 17:41	309
	libcommon_la-buffer.o	2016-12-16 17:41	16K
	libcommon_la-build-hmm.lo	2016-12-16 17:41	318
	libcommon_la-build-hmm.o	2016-12-16 17:41	31K
	libcommon_la-ceqlogo.lo	2016-12-16 17:42	312
	libcommon_la-ceqlogo.o	2016-12-16 17:42	22K
	libcommon_la-cisml-sax.lo	2016-12-16 17:42	318
	libcommon_la-cisml-sax.o	2016-12-16 17:42	20K
	libcommon_la-cisml.lo	2016-12-16 17:42	306
	libcommon_la-cisml.o	2016-12-16 17:42	102K
	libcommon_la-clustalw-io.lo	2016-12-16 17:42	324
	libcommon_la-clustalw-io.o	2016-12-16 17:42	10K
	libcommon_la-data-block-reader.lo	2016-12-16 17:48	342
	libcommon_la-data-block-reader.o	2016-12-16 17:48	6.8K
	libcommon_la-data-block.lo	2016-12-16 17:47	321
	libcommon_la-data-block.o	2016-12-16 17:47	2.8K
	libcommon_la-dp.lo	2016-12-16 17:42	297
	libcommon_la-dp.o	2016-12-16 17:42	12K
	libcommon_la-dreme-sax.lo	2016-12-16 17:42	318
	libcommon_la-dreme-sax.o	2016-12-16 17:42	30K
	libcommon_la-empirical-qvalue.lo	2016-12-16 17:43	339
	libcommon_la-empirical-qvalue.o	2016-12-16 17:43	3.3K
	libcommon_la-eps2png.lo	2016-12-16 17:43	312
	libcommon_la-eps2png.o	2016-12-16 17:43	6.4K
	libcommon_la-evomodel.lo	2016-12-16 17:43	315
	libcommon_la-evomodel.o	2016-12-16 17:43	36K
	libcommon_la-fasta-io.lo	2016-12-16 17:43	315
	libcommon_la-fasta-io.o	2016-12-16 17:43	12K
	libcommon_la-fitevd.lo	2016-12-16 17:43	309
	libcommon_la-fitevd.o	2016-12-16 17:43	38K
	libcommon_la-gendb.lo	2016-12-16 17:43	306
	libcommon_la-gendb.o	2016-12-16 17:43	39K
	libcommon_la-hash_table.lo	2016-12-16 17:44	321
	libcommon_la-hash_table.o	2016-12-16 17:44	8.5K
	libcommon_la-heap.lo	2016-12-16 17:44	303
	libcommon_la-heap.o	2016-12-16 17:44	7.8K
	libcommon_la-html-data.lo	2016-12-16 17:44	318
	libcommon_la-html-data.o	2016-12-16 17:44	21K
	libcommon_la-html-monolith.lo	2016-12-16 17:44	330
	libcommon_la-html-monolith.o	2016-12-16 17:44	12K
	libcommon_la-io.lo	2016-12-16 17:44	297
	libcommon_la-io.o	2016-12-16 17:44	4.3K
	libcommon_la-json-checker.lo	2016-12-16 17:44	327
	libcommon_la-json-checker.o	2016-12-16 17:44	20K
	libcommon_la-json-reader.lo	2016-12-16 17:44	324
	libcommon_la-json-reader.o	2016-12-16 17:44	16K
	libcommon_la-json-writer.lo	2016-12-16 17:44	324
	libcommon_la-json-writer.o	2016-12-16 17:44	72K
	libcommon_la-karlin.lo	2016-12-16 17:44	309
	libcommon_la-karlin.o	2016-12-16 17:44	6.0K
	libcommon_la-linked-list.lo	2016-12-16 17:44	324
	libcommon_la-linked-list.o	2016-12-16 17:44	6.1K
	libcommon_la-log-hmm.lo	2016-12-16 17:44	312
	libcommon_la-log-hmm.o	2016-12-16 17:44	6.2K
	libcommon_la-logodds.lo	2016-12-16 17:44	312
	libcommon_la-logodds.o	2016-12-16 17:44	14K
	libcommon_la-mast-util.lo	2016-12-16 17:45	318
	libcommon_la-mast-util.o	2016-12-16 17:45	18K
	libcommon_la-match.lo	2016-12-16 17:45	306
	libcommon_la-match.o	2016-12-16 17:45	8.4K
	libcommon_la-matrix.lo	2016-12-16 17:45	309
	libcommon_la-matrix.o	2016-12-16 17:45	27K
	libcommon_la-mcast-match.lo	2016-12-16 17:45	324
	libcommon_la-mcast-match.o	2016-12-16 17:45	29K
	libcommon_la-meme-sax.lo	2016-12-16 17:45	315
	libcommon_la-meme-sax.o	2016-12-16 17:45	56K
	libcommon_la-metameme.lo	2016-12-16 17:45	315
	libcommon_la-metameme.o	2016-12-16 17:45	4.1K
	libcommon_la-mhmm-state.lo	2016-12-16 17:46	321
	libcommon_la-mhmm-state.o	2016-12-16 17:46	8.7K
	libcommon_la-mhmm.lo	2016-12-16 17:46	303
	libcommon_la-mhmm.o	2016-12-16 17:46	15K
	libcommon_la-mhmms.lo	2016-12-16 17:46	306
	libcommon_la-mhmms.o	2016-12-16 17:46	35K
	libcommon_la-mhmmscan.lo	2016-12-16 17:46	315
	libcommon_la-mhmmscan.o	2016-12-16 17:46	23K
	libcommon_la-motif-in-common.lo	2016-12-16 17:46	336
	libcommon_la-motif-in-common.o	2016-12-16 17:46	1.9K
	libcommon_la-motif-in-dreme-xml.lo	2016-12-16 17:47	345
	libcommon_la-motif-in-dreme-xml.o	2016-12-16 17:47	11K
	libcommon_la-motif-in-meme-html.lo	2016-12-16 17:47	345
	libcommon_la-motif-in-meme-html.o	2016-12-16 17:47	30K
	libcommon_la-motif-in-meme-json.lo	2016-12-16 17:47	345
	libcommon_la-motif-in-meme-json.o	2016-12-16 17:47	27K
	libcommon_la-motif-in-meme-text.lo	2016-12-16 17:47	345
	libcommon_la-motif-in-meme-text.o	2016-12-16 17:47	40K
	libcommon_la-motif-in-meme-xml.lo	2016-12-16 17:47	342
	libcommon_la-motif-in-meme-xml.o	2016-12-16 17:47	20K
	libcommon_la-motif-in.lo	2016-12-16 17:46	315
	libcommon_la-motif-in.o	2016-12-16 17:46	21K
	libcommon_la-motif.lo	2016-12-16 17:47	306
	libcommon_la-motif.o	2016-12-16 17:47	32K
	libcommon_la-motif_regexp.lo	2016-12-16 17:47	327
	libcommon_la-motif_regexp.o	2016-12-16 17:47	3.9K
	libcommon_la-motifs.lo	2016-12-16 17:47	309
	libcommon_la-motifs.o	2016-12-16 17:47	5.2K
	libcommon_la-motiph-scoring.lo	2016-12-16 17:47	333
	libcommon_la-motiph-scoring.o	2016-12-16 17:47	23K
	libcommon_la-mtwist.lo	2016-12-16 17:47	309
	libcommon_la-mtwist.o	2016-12-16 17:47	15K
	libcommon_la-object-list.lo	2016-12-16 17:47	324
	libcommon_la-object-list.o	2016-12-16 17:47	4.3K
	libcommon_la-order.lo	2016-12-16 17:47	306
	libcommon_la-order.o	2016-12-16 17:47	11K
	libcommon_la-parser-message.lo	2016-12-16 17:48	333
	libcommon_la-parser-message.o	2016-12-16 17:48	3.1K
	libcommon_la-prior-dist.lo	2016-12-16 17:48	321
	libcommon_la-prior-dist.o	2016-12-16 17:48	5.7K
	libcommon_la-prior-reader-from-psp.lo	2016-12-16 17:48	354
	libcommon_la-prior-reader-from-psp.o	2016-12-16 17:48	11K
	libcommon_la-prior-reader-from-wig.lo	2016-12-16 17:48	354
	libcommon_la-prior-reader-from-wig.o	2016-12-16 17:48	4.4K
	libcommon_la-pssm-distr.lo	2016-12-16 17:48	321
	libcommon_la-pssm-distr.o	2016-12-16 17:48	3.9K
	libcommon_la-pssm.lo	2016-12-16 17:48	303
	libcommon_la-pssm.o	2016-12-16 17:48	36K
	libcommon_la-qvalue.lo	2016-12-16 17:48	309
	libcommon_la-qvalue.o	2016-12-16 17:48	11K
	libcommon_la-ranksum_test.lo	2016-12-16 17:48	327
	libcommon_la-ranksum_test.o	2016-12-16 17:48	13K
	libcommon_la-rdb-matrix.lo	2016-12-16 17:48	321
	libcommon_la-rdb-matrix.o	2016-12-16 17:48	13K
	libcommon_la-read-mhmm.lo	2016-12-16 17:48	318
	libcommon_la-read-mhmm.o	2016-12-16 17:48	19K
	libcommon_la-read_sequence.lo	2016-12-16 17:48	330
	libcommon_la-read_sequence.o	2016-12-16 17:48	7.6K
	libcommon_la-red-black-tree.lo	2016-12-16 17:49	333
	libcommon_la-red-black-tree.o	2016-12-16 17:49	17K
	libcommon_la-regex-utils.lo	2016-12-16 17:49	324
	libcommon_la-regex-utils.o	2016-12-16 17:49	5.3K
	libcommon_la-regress.lo	2016-12-16 17:49	312
	libcommon_la-regress.o	2016-12-16 17:49	2.1K
	libcommon_la-reservoir.lo	2016-12-16 17:49	318
	libcommon_la-reservoir.o	2016-12-16 17:49	3.7K
	libcommon_la-sax-parser-utils.lo	2016-12-16 17:49	339
	libcommon_la-sax-parser-utils.o	2016-12-16 17:49	9.3K
	libcommon_la-scanned-sequence.lo	2016-12-16 17:49	339
	libcommon_la-scanned-sequence.o	2016-12-16 17:49	3.2K
	libcommon_la-scored-sites.lo	2016-12-16 17:49	327
	libcommon_la-scored-sites.o	2016-12-16 17:49	7.2K
	libcommon_la-seq-reader-from-fasta.lo	2016-12-16 17:49	354
	libcommon_la-seq-reader-from-fasta.o	2016-12-16 17:49	17K
	libcommon_la-seq.lo	2016-12-16 17:49	300
	libcommon_la-seq.o	2016-12-16 17:49	19K
	libcommon_la-simple-getopt.lo	2016-12-16 17:49	330
	libcommon_la-simple-getopt.o	2016-12-16 17:49	4.9K
	libcommon_la-spearman-rank-correlation.lo	2016-12-16 17:49	366
	libcommon_la-spearman-rank-correlation.o	2016-12-16 17:49	3.4K
	libcommon_la-string-builder.lo	2016-12-16 17:49	333
	libcommon_la-string-builder.o	2016-12-16 17:49	19K
	libcommon_la-string-list.lo	2016-12-16 17:49	324
	libcommon_la-string-list.o	2016-12-16 17:49	26K
	libcommon_la-string-match.lo	2016-12-16 17:49	327
	libcommon_la-string-match.o	2016-12-16 17:49	5.9K
	libcommon_la-subst-matrix.lo	2016-12-16 17:49	327
	libcommon_la-subst-matrix.o	2016-12-16 17:49	13K
	libcommon_la-substmatrix-table.lo	2016-12-16 17:50	342
	libcommon_la-substmatrix-table.o	2016-12-16 17:50	8.8K
	libcommon_la-transfac.lo	2016-12-16 17:50	315
	libcommon_la-transfac.o	2016-12-16 17:50	11K
	libcommon_la-tree.lo	2016-12-16 17:50	303
	libcommon_la-tree.o	2016-12-16 17:50	40K
	libcommon_la-utils.lo	2016-12-16 17:50	306
	libcommon_la-utils.o	2016-12-16 17:50	36K
	libcommon_la-wiggle-reader.lo	2016-12-16 17:50	330
	libcommon_la-wiggle-reader.o	2016-12-16 17:50	13K
	libcommon_la-write-mhmm.lo	2016-12-16 17:50	321
	libcommon_la-write-mhmm.o	2016-12-16 17:50	14K
	libcommon_la-xlate-in.lo	2016-12-16 17:50	315
	libcommon_la-xlate-in.o	2016-12-16 17:50	6.8K
	libcommon_la-xml-out.lo	2016-12-16 17:50	312
	libcommon_la-xml-out.o	2016-12-16 17:50	12K
	libcommon_la-xml-util.lo	2016-12-16 17:50	315
	libcommon_la-xml-util.o	2016-12-16 17:50	8.8K
	libexslt/	2016-12-16 17:01	-
	libxml2/	2016-12-16 17:00	-
	libxslt/	2016-12-16 17:01	-
	likelihood.c	2016-10-18 00:14	9.4K
	linked-list.c	2016-09-28 21:53	8.6K
	linked-list.h	2016-09-28 21:53	3.2K
	llr	2016-12-16 17:58	87K
	llr-llr.o	2016-12-16 17:58	43K
	llr-logs.o	2016-12-16 17:58	2.2K
	llr.c	2016-09-28 21:53	27K
	llr.h	2016-09-28 21:53	1.0K
	log-hmm.c	2016-09-28 21:53	11K
	log-hmm.h	2016-06-17 19:43	1.6K
	logodds.c	2016-09-28 21:53	27K
	logodds.h	2016-09-28 21:53	4.7K
	logs.c	2016-06-17 19:43	1.7K
	logs.h	2016-06-17 19:43	2.3K
	macros.h	2016-10-18 00:14	15K
	mast	2016-12-16 17:58	443K
	mast-diagram.o	2016-12-16 17:58	8.2K
	mast-mast.o	2016-12-16 17:58	65K
	mast-util.c	2016-10-24 19:29	27K
	mast.c	2016-09-28 21:53	83K
	mast.h	2016-09-28 21:53	4.3K
	match.c	2016-06-17 19:43	17K
	match.h	2016-06-17 19:43	3.5K
	matrix.c	2016-09-28 21:53	43K
	matrix.h	2016-09-28 21:53	15K
	mcast	2016-12-16 17:58	728K
	mcast-match.c	2016-09-28 21:53	41K
	mcast-match.h	2016-09-28 21:53	17K
	mcast-mcast.o	2016-12-16 17:58	51K
	mcast.c	2016-09-28 21:53	60K
	meme-banner.o	2016-12-16 18:00	4.7K
	meme-branching_search.o	2016-12-16 18:00	6.2K
	meme-calculate_p_y.o	2016-12-16 18:00	10K
	meme-discretize.o	2016-12-16 18:01	25K
	meme-display.o	2016-12-16 18:01	82K
	meme-dpalign.o	2016-12-16 18:01	15K
	meme-dtd.h	2016-09-28 21:53	5.9K
	meme-em.o	2016-12-16 18:01	7.9K
	meme-exec_parallel.o	2016-12-16 18:01	4.3K
	meme-fisher_exact.o	2016-12-16 18:01	19K
	meme-get-motif	2016-12-16 17:58	364K
	meme-get-motif.c	2016-09-28 21:53	8.2K
	meme-init.o	2016-12-16 18:01	44K
	meme-justlike.o	2016-12-16 18:01	2.0K
	meme-likelihood.o	2016-12-16 18:01	9.4K
	meme-llr.o	2016-12-16 18:01	27K
	meme-logs.o	2016-12-16 18:01	2.2K
	meme-meme.o	2016-12-16 18:01	17K
	meme-meme_util.o	2016-12-16 18:01	20K
	meme-message.o	2016-12-16 18:01	11K
	meme-mp.o	2016-12-16 18:01	2.8K
	meme-oops.o	2016-12-16 18:01	9.4K
	meme-partition.o	2016-12-16 18:01	2.9K
	meme-prior.o	2016-12-16 18:01	11K
	meme-psp.o	2016-12-16 18:01	18K
	meme-read_seq_file.o	2016-12-16 18:02	19K
	meme-sax.c	2016-09-28 21:53	79K
	meme-sax.h	2016-09-28 21:53	7.4K
	meme-seed.o	2016-12-16 18:02	7.6K
	meme-seed_diffs.o	2016-12-16 18:02	9.1K
	meme-seq2theta.o	2016-12-16 18:02	12K
	meme-sp_matrix.o	2016-12-16 18:02	23K
	meme-starts.o	2016-12-16 18:02	8.2K
	meme-subseq7.o	2016-12-16 18:02	16K
	meme-tcm.o	2016-12-16 18:02	8.3K
	meme-ushuffle.o	2016-12-16 18:02	6.7K
	meme-verbosity.o	2016-12-16 18:02	968
	meme.c	2016-10-18 00:14	25K
	meme.h	2016-10-18 00:14	25K
	meme2alph	2016-12-16 17:58	364K
	meme2alph-meme2alph.o	2016-12-16 17:58	4.9K
	meme2alph.c	2016-09-28 21:53	3.8K
	meme2images	2016-12-16 17:58	378K
	meme2images-meme2images.o	2016-12-16 17:58	8.8K
	meme2images.c	2016-06-17 19:43	6.5K
	meme2meme	2016-12-16 17:58	368K
	meme2meme-meme2meme.o	2016-12-16 17:58	19K
	meme2meme.c	2016-09-28 21:53	19K
	meme_get_motif-meme-get-motif.o	2016-12-16 17:58	12K
	meme_util.c	2016-10-18 00:14	20K
	merger.c	2016-06-17 19:43	5.1K
	merger.h	2016-06-17 19:43	1.2K
	message.c	2016-09-28 21:53	19K
	message.h	2016-09-28 21:53	5.5K
	meta-pssm-distr.h	2016-06-17 19:43	490
	metameme.c	2016-09-28 21:53	2.6K
	metameme.h	2016-06-17 19:43	1.0K
	mhmm-dtd.h	2016-06-17 19:43	1.9K
	mhmm-io.c	2016-09-28 21:53	2.1K
	mhmm-state.c	2016-09-28 21:53	14K
	mhmm-state.h	2016-09-28 21:53	7.7K
	mhmm.c	2016-09-28 21:53	34K
	mhmm.h	2016-09-28 21:53	2.7K
	mhmme.c	2016-09-28 21:53	5.8K
	mhmms.c	2016-09-28 21:53	64K
	mhmms.h	2016-09-28 21:53	8.9K
	mhmmscan.c	2016-09-28 21:53	42K
	mhmmscan.h	2016-09-28 21:53	6.1K
	motif-in-common.c	2016-06-17 19:43	918
	motif-in-common.h	2016-06-17 19:43	459
	motif-in-dreme-xml.c	2016-09-28 21:53	13K
	motif-in-dreme-xml.h	2016-09-28 21:53	764
	motif-in-flags.h	2016-09-28 21:53	158
	motif-in-meme-html.c	2016-09-28 21:53	37K
	motif-in-meme-html.h	2016-09-28 21:53	701
	motif-in-meme-json.c	2016-09-28 21:53	30K
	motif-in-meme-json.h	2016-09-28 21:53	792
	motif-in-meme-text.c	2016-09-28 21:53	53K
	motif-in-meme-text.h	2016-09-28 21:53	778
	motif-in-meme-xml.c	2016-09-28 21:53	31K
	motif-in-meme-xml.h	2016-09-28 21:53	761
	motif-in.c	2016-09-28 21:53	21K
	motif-in.h	2016-09-28 21:53	3.4K
	motif-shuffle-columns	2016-12-16 17:58	364K
	motif-shuffle-columns.c	2016-09-28 21:53	7.0K
	motif-spec.h	2016-09-28 21:53	2.9K
	motif.c	2016-09-28 21:53	39K
	motif.h	2016-09-28 21:53	16K
	motif_regexp.c	2016-09-28 21:53	2.7K
	motif_regexp.h	2016-09-28 21:53	423
	motif_shuffle_columns-motif-shuffle-columns.o	2016-12-16 17:58	8.5K
	motifs.c	2016-09-28 21:53	7.5K
	motifs.h	2016-06-17 19:43	551
	motiph	2016-12-16 17:59	578K
	motiph-motiph.o	2016-12-16 17:59	25K
	motiph-scoring.c	2016-09-28 21:53	39K
	motiph-scoring.h	2016-09-28 21:53	3.6K
	motiph.c	2016-09-28 21:53	31K
	mp.c	2016-09-28 21:53	2.8K
	mp.h	2016-09-28 21:53	710
	mtwist.c	2016-06-17 19:43	32K
	mtwist.h	2016-09-28 21:53	28K
	mtype.h	2016-06-17 19:43	258
	nrutil.h	2016-06-17 19:43	1.2K
	object-list.c	2016-06-17 19:43	7.2K
	object-list.h	2016-06-17 19:43	2.9K
	oops.c	2016-10-18 00:14	13K
	order.c	2016-06-17 19:43	14K
	order.h	2016-06-17 19:43	5.1K
	parallel/	2016-12-16 18:02	-
	params.h	2016-06-17 19:43	2.6K
	parser-message.c	2016-09-28 21:53	2.1K
	parser-message.h	2016-09-28 21:53	1.6K
	partition.c	2016-06-17 19:43	1.6K
	partition.h	2016-06-17 19:43	1.0K
	pmp_bf	2016-12-16 17:59	573K
	pmp_bf-pmp_bf.o	2016-12-16 17:59	12K
	pmp_bf.c	2016-09-28 21:53	14K
	prior-dist.c	2016-06-17 19:43	6.2K
	prior-dist.h	2016-06-17 19:43	3.6K
	prior-reader-from-psp.c	2016-06-17 19:43	21K
	prior-reader-from-psp.h	2016-06-17 19:43	930
	prior-reader-from-wig.c	2016-09-28 21:53	7.5K
	prior-reader-from-wig.h	2016-06-17 19:43	1.2K
	prior.c	2016-09-28 21:53	9.1K
	prior.h	2016-09-28 21:53	1.4K
	projrel.h	2016-12-16 17:30	114
	psp.c	2016-09-28 21:53	20K
	psp.h	2016-06-17 19:43	815
	pssm-distr.c	2016-09-28 21:53	3.4K
	pssm-distr.h	2016-09-28 21:53	393
	pssm.c	2016-09-28 21:53	51K
	pssm.h	2016-09-28 21:53	7.0K
	qvalue	2016-12-16 18:00	80K
	qvalue-qvalue.o	2016-12-16 18:00	19K
	qvalue.c	2016-09-28 21:53	24K
	qvalue.h	2016-09-28 21:53	4.5K
	ramen	2016-12-16 17:59	422K
	ramen-ramen.o	2016-12-16 17:59	31K
	ramen-ramen_scan.o	2016-12-16 17:59	6.4K
	ramen.c	2016-09-28 21:53	27K
	ramen_scan.c	2016-09-28 21:53	8.5K
	ramen_scan.h	2016-06-17 19:43	3.0K
	ranksum_test	2016-12-16 18:00	53K
	ranksum_test-ranksum_test.o	2016-12-16 18:00	16K
	ranksum_test.c	2016-09-28 21:53	22K
	ranksum_test.h	2016-06-17 19:43	7.1K
	rdb-matrix.c	2016-09-28 21:53	16K
	rdb-matrix.h	2016-06-17 19:43	4.1K
	read-mhmm.c	2016-09-28 21:53	24K
	read-mhmm.h	2016-06-17 19:43	795
	read_csv.c	2016-06-17 19:43	2.6K
	read_csv.h	2016-06-17 19:43	759
	read_seq_file.c	2016-10-18 00:14	22K
	read_seq_file.h	2016-09-28 21:53	1.2K
	read_sequence.c	2016-09-28 21:53	7.9K
	read_sequence.h	2016-09-28 21:53	684
	reconcile-tree-alignment	2016-12-16 18:00	247K
	reconcile-tree-alignment.c	2016-09-28 21:53	3.0K
	reconcile_tree_alignment-reconcile-tree-alignment.o	2016-12-16 18:00	4.4K
	red-black-tree.c	2016-09-28 21:53	27K
	red-black-tree.h	2016-09-28 21:53	8.5K
	reduce-alignment	2016-12-16 18:00	228K
	reduce-alignment.c	2016-09-28 21:53	2.0K
	reduce_alignment-reduce-alignment.o	2016-12-16 18:00	3.3K
	regex-utils.c	2016-06-17 19:43	7.7K
	regex-utils.h	2016-06-17 19:43	4.4K
	regress.c	2016-09-28 21:53	1.5K
	regress.h	2016-09-28 21:53	1.1K
	remove-alignment-gaps	2016-12-16 18:00	228K
	remove-alignment-gaps.c	2016-09-28 21:53	1.8K
	remove_alignment_gaps-remove-alignment-gaps.o	2016-12-16 18:00	2.9K
	reservoir.c	2016-09-28 21:53	6.4K
	reservoir.h	2016-06-17 19:43	3.4K
	sax-parser-utils.c	2016-09-28 21:53	16K
	sax-parser-utils.h	2016-09-28 21:53	9.2K
	scanned-sequence.c	2016-09-28 21:53	2.5K
	scanned-sequence.h	2016-06-17 19:43	1.4K
	scored-sites.c	2016-09-28 21:53	11K
	scored-sites.h	2016-06-17 19:43	2.5K
	seed.c	2016-09-28 21:53	7.8K
	seed.h	2016-09-28 21:53	6.4K
	seed_diffs.c	2016-09-28 21:53	17K
	seed_diffs.h	2016-09-28 21:53	2.5K
	seq-reader-from-fasta.c	2016-09-28 21:53	35K
	seq-reader-from-fasta.h	2016-09-28 21:53	2.7K
	seq.c	2016-09-28 21:53	22K
	seq.h	2016-09-28 21:53	7.4K
	seq2theta.c	2016-09-28 21:53	9.9K
	shadow.c	2016-09-28 21:53	19K
	shuffle_int.h	2016-06-17 19:43	331
	simple-getopt.c	2016-06-17 19:43	11K
	simple-getopt.h	2016-06-17 19:43	4.4K
	sp_matrix.c	2016-09-28 21:53	37K
	sp_matrix.h	2016-09-28 21:53	6.2K
	spamo	2016-12-16 18:00	529K
	spamo-cisml-sax.o	2016-12-16 17:59	20K
	spamo-cisml.h	2016-06-17 19:43	2.2K
	spamo-matches.c	2016-09-28 21:53	34K
	spamo-matches.h	2016-09-28 21:53	8.9K
	spamo-output.c	2016-09-28 21:53	11K
	spamo-output.h	2016-09-28 21:53	1.0K
	spamo-scan.c	2016-09-28 21:53	11K
	spamo-scan.h	2016-09-28 21:53	1.0K
	spamo-spamo-matches.o	2016-12-16 17:59	18K
	spamo-spamo-output.o	2016-12-16 17:59	9.7K
	spamo-spamo-scan.o	2016-12-16 17:59	13K
	spamo-spamo.o	2016-12-16 17:59	59K
	spamo.c	2016-09-28 21:53	70K
	spearman-rank-correlation.c	2016-06-17 19:43	3.2K
	spearman-rank-correlation.h	2016-06-17 19:43	839
	split.h	2016-06-17 19:43	352
	star.h	2016-06-17 19:43	864
	starts.c	2016-10-18 00:14	15K
	string-builder.c	2016-09-28 21:53	14K
	string-builder.h	2016-09-28 21:53	5.9K
	string-list.c	2016-09-28 21:53	24K
	string-list.h	2016-09-28 21:53	8.7K
	string-match.c	2016-06-17 19:43	10K
	string-match.h	2016-06-17 19:43	1.9K
	strlcpy.h	2016-06-17 19:43	352
	subseq7.c	2016-10-18 00:14	26K
	subst-matrix.c	2016-09-28 21:53	20K
	subst-matrix.h	2016-09-28 21:53	1.0K
	substmatrix-table.c	2016-09-28 21:53	12K
	substmatrix-table.h	2016-09-28 21:53	4.2K
	tcm.c	2016-10-18 00:14	8.3K
	tomtom	2016-12-16 18:00	438K
	tomtom-tomtom.o	2016-12-16 18:00	66K
	tomtom.c	2016-09-28 21:53	95K
	transfac.c	2016-09-28 21:53	15K
	transfac.h	2016-09-28 21:53	4.2K
	tree.c	2016-09-28 21:53	37K
	tree.h	2016-06-17 19:43	9.0K
	user.h	2016-06-17 19:43	1.3K
	ushuffle.c	2016-06-17 19:43	6.7K
	ushuffle.h	2016-06-17 19:43	1.9K
	utest.h	2016-06-17 19:43	5.1K
	utils.c	2016-09-28 21:53	42K
	utils.h	2016-09-28 21:53	22K
	verbosity.c	2016-06-17 19:43	860
	wiggle-reader.c	2016-09-28 21:53	18K
	wiggle-reader.h	2016-09-28 21:53	2.6K
	write-mhmm.c	2016-09-28 21:53	13K
	write-mhmm.h	2016-06-17 19:43	2.1K
	xlate-in.c	2016-09-28 21:53	9.0K
	xlate-in.h	2016-09-28 21:53	1.4K
	xml-out.c	2016-09-28 21:53	9.4K
	xml-out.h	2016-09-28 21:53	2.4K
	xml-util.c	2016-09-28 21:53	8.8K
	xml-util.h	2016-09-28 21:53	3.3K
	xsltproc_lite	2016-12-16 18:00	13K
	xsltproc_lite-xsltproc_lite.o	2016-12-16 18:00	3.0K
	xsltproc_lite.c	2016-06-17 19:43	1.8K
	zscore.h	2016-06-17 19:43	1.9K