MEME: Discovers motifs Options: -alpha [dna|protein] The alphabet of the sequences. Default: dna -mod [oops|zoops|anr] The expected number of motif repeats per sequence. Default: zoops -nmotifs The number of motif to find. Default: 3 -minw The minimum width of the motif. Default: 6 -maxw The maximum width of the motif. Default: 50 -minsites The minimum number of sites per motif. -maxsites The maximum number of sites per motif. -bfile A background file. -neg A negative sequences set, for generating PSPs. -norevcomp Restrict sites to only given strand. -pal Only find palindromes. -help Show this brief help message. ]]> norevcomp -norevcomp Scan given strand only false pal -pal Palindromic motifs only false alpha -alpha STRING true dna protein dna Sequences alphabet mod -mod STRING true oops zoops anr zoops Site distribution nmotifs -nmotifs INT 3 true Count minw -minw INT 6 true Minimum width maxw -maxw INT 50 true Maximum width minsites -minsites INT Minimum sites maxsites -maxsites INT Maximum sites bfile -bfile FILE INPUT Background file neg -neg FILE INPUT Negative sequences sequences FILE INPUT true Input sequences sequence_file sequences alpha norevcomp Sequences motif_width minw maxw Motif Width motif_sites mod minsites maxsites Motif Sites motif_options nmotifs pal Motif Options optional_files bfile neg Optional Files @SERVICE_DIR@/meme_webservice false