MCAST: Find clusters of motifs Options: -upseqs Uploaded sequences -bgweight Add b * background frequency to each count in query -motif_pvthresh p-value threshold for motif hits -max_gap Maximum allowed distance between adjacent hits -output_evthresh Print matches with E-values less than E -help brief help message ]]> upseqs -upseqs FILE INPUT Uploaded Sequence Database bgweight -bgweight FLOAT 4 Pseudocount weight motif_pvthresh -motif_pvthresh FLOAT 0.0005 Motif hit p-value threshold max_gap -max_gap INT 50 Maximum distance between adjacent hits output_evthresh -output_evthresh FLOAT 10 Print matches with E-value less than motifs FILE INPUT true Motifs database STRING true Filename of Sequence Database g1 motifs Motifs g2 database upseqs Sequence Database g3 motif_pvthresh max_gap output_evthresh bgweight Other Options @SERVICE_DIR@/mcast_webservice false