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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.4.0 (Release date: Mon Aug 16 16:18:19 2021 -0700)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: accurate and versatile sequence motif discovery",
Bioinformatics, Mar. 24, 2021.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.248 C 0.252 G 0.252 T 0.248 

MOTIF 1-RGCCACACCC STREME-1
letter-probability matrix: alength= 4 w= 10 nsites= 54 E= 5.6e-005
 0.412563 0.108903 0.369584 0.108950
 0.304214 0.000784 0.629391 0.065611
 0.152406 0.737974 0.087233 0.022387
 0.087223 0.911218 0.000784 0.000775
 0.738311 0.238518 0.022397 0.000775
 0.000775 0.997667 0.000784 0.000775
 0.759923 0.000784 0.173681 0.065611
 0.000775 0.997667 0.000784 0.000775
 0.000775 0.997667 0.000784 0.000775
 0.000775 0.997667 0.000784 0.000775

MOTIF 2-CTTATCTBCTC STREME-2
letter-probability matrix: alength= 4 w= 11 nsites= 28 E= 4.9e-001
 0.038160 0.811821 0.148698 0.001320
 0.001320 0.148698 0.075018 0.774964
 0.001320 0.075018 0.038177 0.885485
 0.996005 0.001337 0.001337 0.001320
 0.001320 0.001337 0.001337 0.996005
 0.075001 0.885502 0.038177 0.001320
 0.296042 0.038177 0.001337 0.664444
 0.038160 0.406579 0.296059 0.259202
 0.111841 0.701301 0.075018 0.111841
 0.111841 0.185538 0.038177 0.664444
 0.001320 0.738141 0.222378 0.038160

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Stopped because maximum number of motifs (2) reached.
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COMMAND:	streme -p common/Klf1-200-100.fa -oc results/streme3 -objfun de -order 1 -nmotifs 2 -dna -neval 20 -useer -hofract 0.2 -verbosity 1
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CPU:		Timothys-Mac-Mini.local
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FINALTIME:	0.68 seconds
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