******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.4.0 (Release date: Tue Mar 9 17:38:20 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= common/adh.s CONTROL SEQUENCES= --none-- ALPHABET= ACDEFGHIKLMNPQRSTVWY Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 2BHD_STREX 1.0000 255 3BHD_COMTE 1.0000 253 ADH_DROME 1.0000 255 AP27_MOUSE 1.0000 244 BA72_EUBSP 1.0000 249 BDH_HUMAN 1.0000 343 BPHB_PSEPS 1.0000 275 BUDC_KLETE 1.0000 241 DHES_HUMAN 1.0000 327 DHGB_BACME 1.0000 262 DHII_HUMAN 1.0000 292 DHMA_FLAS1 1.0000 270 ENTA_ECOLI 1.0000 248 FIXR_BRAJA 1.0000 278 GUTD_ECOLI 1.0000 259 HDE_CANTR 1.0000 906 HDHA_ECOLI 1.0000 255 LIGD_PSEPA 1.0000 305 NODG_RHIME 1.0000 245 RIDH_KLEAE 1.0000 249 YINL_LISMO 1.0000 248 YRTP_BACSU 1.0000 238 CSGA_MYXXA 1.0000 166 DHB2_HUMAN 1.0000 387 DHB3_HUMAN 1.0000 310 DHCA_HUMAN 1.0000 276 FABI_ECOLI 1.0000 262 FVT1_HUMAN 1.0000 332 HMTR_LEIMA 1.0000 287 MAS1_AGRRA 1.0000 476 PCR_PEA 1.0000 399 RFBB_NEIGO 1.0000 346 YURA_MYXXA 1.0000 258 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -nsites 27 common/adh.s -oc results/meme6 -mod anr -protein -nmotifs 2 -objfun classic -minw 8 -nostatus -mpi model: mod= anr nmotifs= 2 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values width: minw= 8 maxw= 50 nsites: minsites= 27 maxsites= 27 wnsites= 0.8 theta: spmap= pam spfuzz= 120 em: prior= megap b= 49975 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 9996 N= 33 sample: seed= 0 hsfrac= 0 searchsize= 9996 norand= no csites= 1000 Dirichlet mixture priors file: prior30.plib Letter frequencies in dataset: A 0.111 C 0.0121 D 0.0502 E 0.0553 F 0.0359 G 0.0898 H 0.0182 I 0.0566 K 0.0518 L 0.0919 M 0.0272 N 0.0405 P 0.0405 Q 0.0294 R 0.0494 S 0.0637 T 0.0565 V 0.083 W 0.0095 Y 0.027 Background letter frequencies (from file dataset with add-one prior applied): A 0.111 C 0.0122 D 0.0502 E 0.0553 F 0.0359 G 0.0898 H 0.0183 I 0.0566 K 0.0518 L 0.0919 M 0.0273 N 0.0405 P 0.0405 Q 0.0295 R 0.0494 S 0.0637 T 0.0565 V 0.083 W 0.00959 Y 0.0271 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SAYSASKAAVEGLTESLALELAPYGIRVNVIAPGAVLTDM MEME-1 width = 40 sites = 27 llr = 1337 E-value = 7.1e-198 ******************************************************************************** -------------------------------------------------------------------------------- Motif SAYSASKAAVEGLTESLALELAPYGIRVNVIAPGAVLTDM MEME-1 Description -------------------------------------------------------------------------------- Simplified A 22:162:56:12:1:216:::4:::::1:2:3::2::121 pos.-specific C :::1:::::::::::::::::::::::::1:::::::::: probability D :::::::::::::::::::3::::::::::::::::1:3: matrix E ::::::::::1:::3::::5::11:::::::1:::::::: F :::::::31:::3:::::::::::::::::::::11:::: G :1:1:::13::4:::1:1::111:6::::1:1:7:::::1 H ::::::::::::::1::::::::1:::::::1:1:::::: I :::::::::11:::::::::1::::6:1::3:::12:::1 K ::::::a:::1:::2:::1::121::1:::::::::1::: L :::::::::31:6:::5:215::1:::::11:::::1::1 M ::::1::::1:1:1::3:1:1:::::::::::::::::14 N :1:::::::::1::::::::::::3:::5::1::1:1:1: P 11::::::::::::::::::::4:::::::::9:2:::1: Q ::::::::::::::1::11::::::::::::::::::::: R ::::::::::1:::3::21::11:::4:::::::::1::: S 31:427::1:11:213::::::::::::11:1::::11:: T 2::1:1::::1::4:2::::::11::1:1::1:::1:611 V 12:::::::41::1::::1:1::::3:7124:::141::: W :::::::::::::::::::::::::::::::::::::::: Y ::a:::::::::::::::::1::2:::::::1:::::::: bits 6.7 6.0 5.4 4.7 * Relative 4.0 * * Entropy 3.4 * * * (71.4 bits) 2.7 * ** * * * 2.0 * **** *** ** * ** ** * ** * 1.3 * ******** ******* ********** * ** * *** 0.7 **************************************** 0.0 ---------------------------------------- Multilevel SAYSASKAAVXGLTESLALELAPXGIRVNVVAPGXVXTDM consensus A SA FGL FSR M D K NV I I sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAYSASKAAVEGLTESLALELAPYGIRVNVIAPGAVLTDM MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------------------------------- BUDC_KLETE 150 5.30e-30 QAGHVGNPEL AVYSSSKFAVRGLTQTAARDLAPLGITVNGFCPGIVKTPM WAEIDRQCRK NODG_RHIME 150 1.93e-29 VAGAIGNPGQ TNYCASKAGMIGFSKSLAQEIATRNITVNCVAPGFIESAM TDKLNHKQKE FIXR_BRAJA 187 4.48e-29 AGSRVHPFAG SAYATSKAALASLTRELAHDYAPHGIRVNAIAPGEIRTDM LSPDAEARVV YRTP_BACSU 153 5.05e-27 TAGQRGAAVT SAYSASKFAVLGLTESLMQEVRKHNIRVSALTPSTVASDM SIELNLTDGN DHGB_BACME 158 1.35e-26 HEWKIPWPLF VHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPI NAEKFADPEQ AP27_MOUSE 147 3.99e-26 MVAHVTFPNL ITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDM GKKVSADPEF 2BHD_STREX 150 1.02e-25 AAGLMGLALT SSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM TAETGIRQGE HDHA_ECOLI 157 7.91e-25 MAAENKNINM TSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDA LKSVITPEIE YURA_MYXXA 158 2.64e-24 SLAGFRGLPA TRYSASKAFLSTFMESLRVDLRGTGVRVTCIYPGFVKSEL TATNNFPMPF BA72_EUBSP 155 9.52e-24 VTGIFGSLSG VGYPASKASVIGLTHGLGREIIRKNIRVVGVAPGVVNTDM TNGNPPEIME DHMA_FLAS1 163 2.99e-23 VNSFMAEPEA AAYVAAKGGVAMLTRAMAVDLARHGILVNMIAPGPVDVTG NNTGYSEPRL DHB2_HUMAN 230 5.51e-23 MGGGAPMERL ASYGSSKAAVTMFSSVMRLELSKWGIKVASIQPGGFLTNI AGTSDKWEKL ENTA_ECOLI 142 7.46e-23 DAAHTPRIGM SAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDM QRTLWVSDDA DHES_HUMAN 153 1.66e-22 VGGLMGLPFN DVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF MEKVLGSPEE HDE_CANTR 465 3.64e-22 TSGIYGNFGQ ANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHAETAMT LTIFREQDKN RIDH_KLEAE 158 7.15e-22 IAGVVPVIWE PVYTASKFAVQAFVHTTRRQVAQYGVRVGAVLPGPVVTAL LDDWPKAKMD FVT1_HUMAN 184 3.23e-21 QAGQLGLFGF TAYSASKFAIRGLAEALQMEVKPYNVYITVAYPPDTDTPG FAEENRTKPL BDH_HUMAN 206 5.13e-21 MLGRMANPAR SPYCITKFGVEAFSDCLRYEMYPLGVKVSVVEPGNFIAAT SLYNPESIQA HMTR_LEIMA 191 1.53e-20 AMTNQPLLGY TIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD DMPPAVWEGH DHB3_HUMAN 196 2.61e-20 GIALFPWPLY SMYSASKAFVCAFSKALQEEYKAKEVIIQVLTPYAVSTAM TKYLNTNVIT GUTD_ECOLI 152 2.61e-20 KSGKVGSKHN SGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSP MFQSLLPQYA CSGA_MYXXA 86 3.40e-20 SLAANTDGGA YAYRMSKAALNMAVRSMSTDLRPEGFVTVLLHPGWVQTDM GGPDATLPAP HDE_CANTR 161 2.69e-19 PAGLYGNFGQ ANYASAKSALLGFAETLAKEGAKYNIKANAIAPLARSRMT ESILPPPMLE LIGD_PSEPA 155 7.33e-19 LGGFMGSALA GPYSAAKAASINLMEGYRQGLEKYGIGVSVCTPANIKSNI AEASRLRPAK ADH_DROME 150 5.98e-18 VTGFNAIYQV PVYSGTKAAVVNFTSSLAKLAPITGVTAYTVNPGITRTTL VHKFNSWLDV FABI_ECOLI 157 1.01e-16 LGAERAIPNY NVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLA ASGIKDFRKM 3BHD_COMTE 149 2.27e-16 VSSWLPIEQY AGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYT PMMQASLPKG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAYSASKAAVEGLTESLALELAPYGIRVNVIAPGAVLTDM MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- BUDC_KLETE 5.3e-30 149_[1]_52 NODG_RHIME 1.9e-29 149_[1]_56 FIXR_BRAJA 4.5e-29 186_[1]_52 YRTP_BACSU 5e-27 152_[1]_46 DHGB_BACME 1.4e-26 157_[1]_65 AP27_MOUSE 4e-26 146_[1]_58 2BHD_STREX 1e-25 149_[1]_66 HDHA_ECOLI 7.9e-25 156_[1]_59 YURA_MYXXA 2.6e-24 157_[1]_61 BA72_EUBSP 9.5e-24 154_[1]_55 DHMA_FLAS1 3e-23 162_[1]_68 DHB2_HUMAN 5.5e-23 229_[1]_118 ENTA_ECOLI 7.5e-23 141_[1]_67 DHES_HUMAN 1.7e-22 152_[1]_135 HDE_CANTR 2.7e-19 160_[1]_264_[1]_402 RIDH_KLEAE 7.1e-22 157_[1]_52 FVT1_HUMAN 3.2e-21 183_[1]_109 BDH_HUMAN 5.1e-21 205_[1]_98 HMTR_LEIMA 1.5e-20 190_[1]_57 DHB3_HUMAN 2.6e-20 195_[1]_75 GUTD_ECOLI 2.6e-20 151_[1]_68 CSGA_MYXXA 3.4e-20 85_[1]_41 LIGD_PSEPA 7.3e-19 154_[1]_111 ADH_DROME 6e-18 149_[1]_66 FABI_ECOLI 1e-16 156_[1]_66 3BHD_COMTE 2.3e-16 148_[1]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAYSASKAAVEGLTESLALELAPYGIRVNVIAPGAVLTDM MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SAYSASKAAVEGLTESLALELAPYGIRVNVIAPGAVLTDM width=40 seqs=27 BUDC_KLETE ( 150) AVYSSSKFAVRGLTQTAARDLAPLGITVNGFCPGIVKTPM 1 NODG_RHIME ( 150) TNYCASKAGMIGFSKSLAQEIATRNITVNCVAPGFIESAM 1 FIXR_BRAJA ( 187) SAYATSKAALASLTRELAHDYAPHGIRVNAIAPGEIRTDM 1 YRTP_BACSU ( 153) SAYSASKFAVLGLTESLMQEVRKHNIRVSALTPSTVASDM 1 DHGB_BACME ( 158) VHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPI 1 AP27_MOUSE ( 147) ITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDM 1 2BHD_STREX ( 150) SSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM 1 HDHA_ECOLI ( 157) TSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDA 1 YURA_MYXXA ( 158) TRYSASKAFLSTFMESLRVDLRGTGVRVTCIYPGFVKSEL 1 BA72_EUBSP ( 155) VGYPASKASVIGLTHGLGREIIRKNIRVVGVAPGVVNTDM 1 DHMA_FLAS1 ( 163) AAYVAAKGGVAMLTRAMAVDLARHGILVNMIAPGPVDVTG 1 DHB2_HUMAN ( 230) ASYGSSKAAVTMFSSVMRLELSKWGIKVASIQPGGFLTNI 1 ENTA_ECOLI ( 142) SAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDM 1 DHES_HUMAN ( 153) DVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF 1 HDE_CANTR ( 465) ANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHAETAMT 1 RIDH_KLEAE ( 158) PVYTASKFAVQAFVHTTRRQVAQYGVRVGAVLPGPVVTAL 1 FVT1_HUMAN ( 184) TAYSASKFAIRGLAEALQMEVKPYNVYITVAYPPDTDTPG 1 BDH_HUMAN ( 206) SPYCITKFGVEAFSDCLRYEMYPLGVKVSVVEPGNFIAAT 1 HMTR_LEIMA ( 191) TIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD 1 DHB3_HUMAN ( 196) SMYSASKAFVCAFSKALQEEYKAKEVIIQVLTPYAVSTAM 1 GUTD_ECOLI ( 152) SGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSP 1 CSGA_MYXXA ( 86) YAYRMSKAALNMAVRSMSTDLRPEGFVTVLLHPGWVQTDM 1 HDE_CANTR ( 161) ANYASAKSALLGFAETLAKEGAKYNIKANAIAPLARSRMT 1 LIGD_PSEPA ( 155) GPYSAAKAASINLMEGYRQGLEKYGIGVSVCTPANIKSNI 1 ADH_DROME ( 150) PVYSGTKAAVVNFTSSLAKLAPITGVTAYTVNPGITRTTL 1 FABI_ECOLI ( 157) NVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLA 1 3BHD_COMTE ( 149) AGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAYSASKAAVEGLTESLALELAPYGIRVNVIAPGAVLTDM MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 40 n= 8708 bayes= 8.32876 E= 7.1e-198 78 -254 -34 -147 -302 -131 -152 -62 -129 -290 -232 1 61 -99 -186 185 152 -28 -297 28 81 -243 -227 -157 -281 8 94 -51 -139 -266 37 128 64 -107 -24 71 -38 94 -286 -249 -711 -486 -694 -703 -166 -715 -301 -539 -647 -481 41 -552 -647 -523 -596 -604 -622 -594 -211 511 43 306 -504 -476 -498 62 -432 -491 -454 -513 -448 -394 -20 -394 -49 267 46 -116 -488 -494 256 -55 -380 -333 -306 -147 -314 -126 -333 -176 43 -337 -422 -301 -338 102 -102 -185 -297 -344 95 -245 -557 -576 -542 -399 -493 -565 -545 -580 -503 -412 -444 -465 -520 334 99 -480 -520 -543 -533 -410 -566 -527 -610 -595 -434 -517 421 -585 -521 -447 -518 -440 -162 -528 -491 -610 -463 -541 220 -248 -599 -590 275 68 -499 -547 -598 -563 -499 -487 -467 -485 -561 -51 -345 -448 186 -451 239 -237 -591 -579 94 144 -519 -558 -591 -571 -501 -484 -464 -483 -556 31 -340 -438 -530 -571 -130 -171 -475 -398 -208 -136 -282 57 -364 156 190 -353 -386 -300 -360 -71 -226 214 -249 -239 -53 131 -189 132 -325 -337 -130 69 67 6 -251 7 -276 65 104 73 36 -33 -305 -255 60 -248 -257 -204 -307 196 93 -262 -187 -112 221 79 -331 -154 -241 23 -43 -277 -315 -282 -173 -330 -615 -533 276 -624 -424 -195 -507 272 54 -41 -502 -399 -478 -487 -408 -293 -340 -350 -21 133 -456 -467 -397 -464 -370 -319 -397 -404 113 -289 -426 -333 -405 161 301 55 -392 -421 -270 -318 -27 205 -360 -358 184 -359 174 -128 -279 -170 -296 135 217 25 -210 -352 -329 -279 25 108 -272 -69 -303 -79 -207 -279 -194 -145 -247 -26 -309 -167 -237 266 150 -134 -303 -3 27 -206 -509 -431 -216 -478 -316 -150 -399 230 304 -391 -416 -327 -391 -333 -51 -66 -275 36 247 -121 -386 -331 -369 -59 -312 -355 -274 -366 0 -332 -420 83 135 -44 -258 -256 -352 -383 -258 -242 -229 -22 -7 -359 94 -50 59 104 124 -1 -299 178 102 -191 -38 65 -285 33 -149 -618 228 320 -630 -136 -348 -540 -273 -46 -472 -336 -409 51 -401 -78 -391 -503 -597 -523 -137 143 -475 -397 -202 -52 -284 52 -364 229 134 -357 -384 -295 -357 -299 -233 45 -250 177 162 -275 -191 -9 -329 43 -132 -74 66 -127 -254 -154 -25 -74 138 -38 -189 -317 -307 27 -124 -305 -201 52 -347 -47 -141 -76 192 -335 -271 -164 293 62 56 -177 33 -342 -322 -272 -246 -283 -28 53 -1 -337 271 -330 140 3 -253 5 -273 63 -17 -40 33 -325 161 254 -424 -419 -237 -56 -544 268 -256 -553 -25 -542 -487 248 -443 29 -32 -290 -365 -549 -465 -431 -434 -297 -500 -488 -38 -581 -440 343 -448 -152 -181 -442 -510 -427 -487 -433 -343 169 -377 -6 -124 -253 -237 -165 -292 -130 95 -53 141 -110 -223 -191 -306 -111 289 -199 121 -97 -294 32 -107 34 -358 -323 -278 -437 -259 51 -331 -167 -221 -347 -313 -303 -306 -312 -104 314 -337 -381 -131 -293 -188 -131 -336 -136 91 -335 -112 -332 -265 339 -283 55 -26 99 26 -44 -308 19 61 242 -466 -389 -205 50 -276 -9 -356 -8 57 -24 -381 -292 -353 104 -40 134 -245 -235 -151 129 -467 -409 -7 -463 -310 267 -374 58 -147 -44 -406 -320 -379 -316 -245 191 -274 -260 99 130 -186 56 -330 -45 181 -331 -98 -126 28 81 -274 66 -160 73 83 -325 -307 118 -151 105 -363 -335 -415 -434 -308 -106 -314 -162 -394 -363 433 -265 -346 -265 -306 -402 -438 -442 -189 -322 -302 -362 -470 314 97 -486 -345 -225 -434 -258 -107 -358 -350 -129 -145 -474 -364 -55 58 -208 -45 -38 88 -132 -194 40 -192 -91 46 126 191 -156 -239 -55 -39 -8 170 -243 -278 -165 -68 -73 89 -432 -270 182 -342 -76 -152 -339 -372 -283 -55 -75 119 210 -251 -242 -119 -296 98 -5 -333 -127 98 -74 111 42 -257 82 -273 67 104 28 -36 -35 -308 29 -94 -230 -409 -430 -401 -511 -338 -87 -83 -164 -292 -238 -414 -292 -79 108 346 -131 -379 -421 55 -286 208 -7 -323 -338 -132 -316 -103 -124 118 81 157 -74 -164 -39 36 -113 -305 29 -54 -168 -62 -384 13 -45 -274 102 -352 36 354 -344 -27 -289 -351 -287 125 -162 -245 -235 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAYSASKAAVEGLTESLALELAPYGIRVNVIAPGAVLTDM MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 40 nsites= 27 E= 7.1e-198 0.222222 0.000000 0.037037 0.000000 0.000000 0.037037 0.000000 0.037037 0.000000 0.000000 0.000000 0.037037 0.074074 0.000000 0.000000 0.259259 0.185185 0.074074 0.000000 0.037037 0.222222 0.000000 0.000000 0.000000 0.000000 0.111111 0.037037 0.037037 0.000000 0.000000 0.037037 0.111111 0.074074 0.000000 0.037037 0.111111 0.037037 0.185185 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.962963 0.148148 0.111111 0.000000 0.000000 0.000000 0.148148 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.037037 0.407407 0.074074 0.037037 0.000000 0.000000 0.555556 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.037037 0.000000 0.037037 0.074074 0.000000 0.000000 0.000000 0.000000 0.222222 0.037037 0.000000 0.000000 0.000000 0.222222 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.111111 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.518519 0.000000 0.000000 0.000000 0.259259 0.148148 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.037037 0.000000 0.592593 0.000000 0.000000 0.000000 0.074074 0.259259 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.074074 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.074074 0.000000 0.296296 0.111111 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.407407 0.000000 0.000000 0.074074 0.037037 0.000000 0.148148 0.000000 0.000000 0.000000 0.111111 0.074074 0.111111 0.000000 0.037037 0.000000 0.037037 0.111111 0.111111 0.074074 0.074074 0.000000 0.000000 0.185185 0.000000 0.000000 0.000000 0.000000 0.407407 0.037037 0.000000 0.000000 0.037037 0.148148 0.074074 0.000000 0.000000 0.000000 0.074074 0.037037 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.296296 0.000000 0.000000 0.000000 0.000000 0.592593 0.037037 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.111111 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.074074 0.000000 0.000000 0.000000 0.000000 0.222222 0.407407 0.148148 0.000000 0.000000 0.000000 0.000000 0.037037 0.259259 0.000000 0.000000 0.074074 0.000000 0.185185 0.037037 0.000000 0.000000 0.000000 0.074074 0.259259 0.074074 0.000000 0.000000 0.000000 0.000000 0.185185 0.037037 0.000000 0.037037 0.000000 0.074074 0.000000 0.000000 0.000000 0.037037 0.000000 0.037037 0.000000 0.000000 0.000000 0.333333 0.185185 0.037037 0.000000 0.037037 0.148148 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.481481 0.259259 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.037037 0.000000 0.037037 0.592593 0.000000 0.000000 0.000000 0.000000 0.074074 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.074074 0.185185 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.037037 0.000000 0.037037 0.037037 0.074074 0.222222 0.074074 0.037037 0.000000 0.111111 0.111111 0.000000 0.037037 0.148148 0.000000 0.037037 0.037037 0.000000 0.259259 0.518519 0.000000 0.037037 0.000000 0.000000 0.000000 0.074074 0.000000 0.000000 0.000000 0.037037 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.037037 0.037037 0.000000 0.000000 0.000000 0.074074 0.000000 0.074074 0.000000 0.481481 0.074074 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.111111 0.000000 0.111111 0.407407 0.000000 0.000000 0.037037 0.000000 0.148148 0.000000 0.037037 0.074074 0.037037 0.000000 0.000000 0.037037 0.000000 0.148148 0.037037 0.000000 0.000000 0.000000 0.037037 0.037037 0.000000 0.000000 0.074074 0.000000 0.074074 0.000000 0.037037 0.222222 0.000000 0.000000 0.000000 0.370370 0.037037 0.074074 0.000000 0.074074 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.074074 0.037037 0.000000 0.148148 0.000000 0.148148 0.111111 0.000000 0.037037 0.000000 0.037037 0.037037 0.037037 0.074074 0.000000 0.037037 0.185185 0.000000 0.000000 0.000000 0.037037 0.000000 0.592593 0.000000 0.000000 0.037037 0.000000 0.000000 0.259259 0.000000 0.037037 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.592593 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.037037 0.037037 0.000000 0.000000 0.000000 0.000000 0.037037 0.037037 0.037037 0.148148 0.037037 0.000000 0.000000 0.000000 0.000000 0.444444 0.000000 0.148148 0.037037 0.000000 0.037037 0.074074 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.111111 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.703704 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.037037 0.037037 0.000000 0.000000 0.000000 0.000000 0.481481 0.000000 0.037037 0.037037 0.148148 0.074074 0.074074 0.000000 0.037037 0.185185 0.074074 0.000000 0.000000 0.000000 0.148148 0.000000 0.037037 0.000000 0.074074 0.037037 0.037037 0.000000 0.000000 0.000000 0.148148 0.037037 0.222222 0.000000 0.000000 0.037037 0.037037 0.000000 0.000000 0.037037 0.000000 0.000000 0.333333 0.000000 0.148148 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.370370 0.000000 0.000000 0.259259 0.037037 0.000000 0.074074 0.000000 0.074074 0.074074 0.000000 0.000000 0.037037 0.037037 0.074074 0.000000 0.037037 0.000000 0.111111 0.111111 0.000000 0.000000 0.074074 0.037037 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.037037 0.000000 0.000000 0.851852 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.703704 0.074074 0.000000 0.000000 0.037037 0.000000 0.000000 0.037037 0.000000 0.000000 0.037037 0.037037 0.000000 0.000000 0.037037 0.185185 0.000000 0.037037 0.037037 0.074074 0.037037 0.000000 0.074074 0.000000 0.037037 0.037037 0.111111 0.185185 0.000000 0.000000 0.037037 0.037037 0.074074 0.037037 0.000000 0.000000 0.000000 0.037037 0.037037 0.074074 0.000000 0.000000 0.222222 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.037037 0.037037 0.148148 0.370370 0.000000 0.000000 0.037037 0.000000 0.111111 0.037037 0.000000 0.037037 0.037037 0.037037 0.111111 0.148148 0.000000 0.074074 0.000000 0.037037 0.111111 0.074074 0.037037 0.074074 0.000000 0.037037 0.074074 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.037037 0.037037 0.000000 0.000000 0.000000 0.000000 0.037037 0.148148 0.592593 0.037037 0.000000 0.000000 0.185185 0.000000 0.259259 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.074074 0.074074 0.148148 0.000000 0.000000 0.037037 0.074074 0.037037 0.000000 0.037037 0.074074 0.000000 0.037037 0.000000 0.037037 0.074074 0.000000 0.111111 0.000000 0.111111 0.370370 0.000000 0.037037 0.000000 0.000000 0.000000 0.148148 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAYSASKAAVEGLTESLALELAPYGIRVNVIAPGAVLTDM MEME-1 regular expression -------------------------------------------------------------------------------- [SA]AYS[AS][SA]K[AF][AG][VL]XG[LF][TS][ER]S[LM]AL[ED]LA[PK]X[GN][IV]RVNV[VI]APGX[VI]XTDM -------------------------------------------------------------------------------- Time 0.99 secs. ******************************************************************************** ******************************************************************************** MOTIF GKVVJITGASSGIGKATAKALAKAGAKVV MEME-2 width = 29 sites = 27 llr = 1063 E-value = 2.0e-157 ******************************************************************************** -------------------------------------------------------------------------------- Motif GKVVJITGASSGIGKATAKALAKAGAKVV MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::14::::521::::517:2:422:6::1 pos.-specific C ::::::::1:::::::::::::::::::: probability D 1::::::::1:::::::::1:::1::::: matrix E :::::::::::::::2::11::22::::: F ::::::::::::::1:::::3::::1::1 G 5::::::a331a:a::::::::1:9:::1 H ::::::::::::::1::::1:1::::::: I :::135::::::6:::2:1::1:::::1: K :61:::::::1:::3:::3:::31:14:: L ::::5:::::::3:2:1:2161:1:::1: M ::::::::::::::::1:::::::::::: N ::1::::::1::::::::::::::::1:: P ::::::::::::::::::::::::::::: Q 11:::::::::::::::::::::1::::: R ::::::::::2:::2:::11::1:::1:: S 1:::::::133::::1:1::::11:11:1 T ::1:::a:::::::::3::1::1:::::1 V ::5414::::::1::::2:1:1:::::66 W ::::::::::::::::::::::::::::: Y ::::::::::::::::1:::::::::::: bits 6.7 6.0 5.4 4.7 Relative 4.0 * Entropy 3.4 ** * * (56.8 bits) 2.7 *** * * * * 2.0 * ****** **** * * * * 1.3 ******************* *** ***** 0.7 ***************************** 0.0 ----------------------------- Multilevel GKVVLITGAGSGIGKATAKXLAKAGAKVV consensus AIV GS L EI F sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKVVJITGASSGIGKATAKALAKAGAKVV MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------- HDE_CANTR 322 1.60e-24 ASGAPTVSLK DKVVLITGAGAGLGKEYAKWFAKYGAKVV VNDFKDATKT DHII_HUMAN 34 1.24e-22 NEEFRPEMLQ GKKVIVTGASKGIGREMAYHLAKMGAHVV VTARSKETLQ YINL_LISMO 5 5.86e-22 MTIK NKVIIITGASSGIGKATALLLAEKGAKLV LAARRVEKLE HDHA_ECOLI 11 1.39e-21 MFNSDNLRLD GKCAIITGAGAGIGKEIAITFATAGASVV VSDINADAAN ENTA_ECOLI 5 2.25e-21 MDFS GKNVWVTGAGKGIGYATALAFVEAGAKVT GFDQAFTQEQ HDE_CANTR 8 2.85e-21 MSPVDFK DKVVIITGAGGGLGKYYSLEFAKLGAKVV VNDLGGALNG RIDH_KLEAE 14 1.14e-20 SVSSMNTSLS GKVAAITGAASGIGLECARTLLGAGAKVV LIDREGEKLN BUDC_KLETE 2 4.73e-20 M QKVALVTGAGQGIGKAIALRLVKDGFAVA IADYNDATAT DHGB_BACME 7 1.66e-19 MYKDLE GKVVVITGSSTGLGKSMAIRFATEKAKVV VNYRSKEDEA AP27_MOUSE 7 4.56e-19 MKLNFS GLRALVTGAGKGIGRDTVKALHASGAKVV AVTRTNSDLV YRTP_BACSU 6 9.06e-19 MQSLQ HKTALITGGGRGIGRATALALAKEGVNIG LIGRTSANVE DHMA_FLAS1 14 1.10e-18 GVSRRPGRLA GKAAIVTGAAGGIGRATVEAYLREGASVV AMDLAPRLAA BA72_EUBSP 6 1.47e-18 MNLVQ DKVTIITGGTRGIGFAAAKIFIDNGAKVS IFGETQEEVD DHB3_HUMAN 48 2.59e-18 VLPKSFLRSM GQWAVITGAGDGIGKAYSFELAKRGLNVV LISRTLEKLE 3BHD_COMTE 6 4.12e-18 TNRLQ GKVALVTGGASGVGLEVVKLLLGEGAKVA FSDINEAAGQ FIXR_BRAJA 36 5.94e-18 AVNARVDRGE PKVMLLTGASRGIGHATAKLFSEAGWRII SCARQPFDGE FVT1_HUMAN 32 1.22e-17 LISPKPLALP GAHVVVTGGSSGIGKCIAIECYKQGAFIT LVARNEDKLL BDH_HUMAN 55 1.60e-17 TYASAAEPVG SKAVLVTGCDSGFGFSLAKHLHSKGFLVF AGCLMKDKGH PCR_PEA 86 3.21e-17 SSSEGKKTLR KGNVVITGASSGLGLATAKALAESGKWHV IMACRDYLKA DHB2_HUMAN 82 3.50e-17 LSGQELLPVD QKAVLVTGGDCGLGHALCKYLDELGFTVF AGVLNENGPG 2BHD_STREX 6 5.37e-17 MNDLS GKTVIITGGARGLGAEAARQAVAAGARVV LADVLDEEGA LIGD_PSEPA 6 3.31e-16 MKDFQ DQVAFITGGASGAGFGQAKVFGQAGAKIV VADVRAEAVE NODG_RHIME 6 8.57e-16 MFELT GRKALVTGASGAIGGAIARVLHAQGAIVG LHGTQIEKLE DHES_HUMAN 2 5.71e-15 A RTVVLITGCSSGIGLHLAVRLASDPSQSF KVYATLRDLK DHCA_HUMAN 4 1.18e-14 SSG IHVALVTGGNKGIGLAIVRDLCRLFSGDV VLTARDVTRG BPHB_PSEPS 5 3.68e-14 MKLK GEAVLITGGASGLGRALVDRFVAEAKVAV LDKSAERLAE MAS1_AGRRA 245 1.10e-13 FSHWTVEIHQ SPVILVSGSNRGVGKAIAEDLIAHGYRLS LGARKVKDLE -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKVVJITGASSGIGKATAKALAKAGAKVV MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- HDE_CANTR 2.8e-21 7_[2]_285_[2]_556 DHII_HUMAN 1.2e-22 33_[2]_230 YINL_LISMO 5.9e-22 4_[2]_215 HDHA_ECOLI 1.4e-21 10_[2]_216 ENTA_ECOLI 2.2e-21 4_[2]_215 RIDH_KLEAE 1.1e-20 13_[2]_207 BUDC_KLETE 4.7e-20 1_[2]_211 DHGB_BACME 1.7e-19 6_[2]_227 AP27_MOUSE 4.6e-19 6_[2]_209 YRTP_BACSU 9.1e-19 5_[2]_204 DHMA_FLAS1 1.1e-18 13_[2]_228 BA72_EUBSP 1.5e-18 5_[2]_215 DHB3_HUMAN 2.6e-18 47_[2]_234 3BHD_COMTE 4.1e-18 5_[2]_219 FIXR_BRAJA 5.9e-18 35_[2]_214 FVT1_HUMAN 1.2e-17 31_[2]_272 BDH_HUMAN 1.6e-17 54_[2]_260 PCR_PEA 3.2e-17 85_[2]_285 DHB2_HUMAN 3.5e-17 81_[2]_277 2BHD_STREX 5.4e-17 5_[2]_221 LIGD_PSEPA 3.3e-16 5_[2]_271 NODG_RHIME 8.6e-16 5_[2]_211 DHES_HUMAN 5.7e-15 1_[2]_297 DHCA_HUMAN 1.2e-14 3_[2]_244 BPHB_PSEPS 3.7e-14 4_[2]_242 MAS1_AGRRA 1.1e-13 244_[2]_203 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKVVJITGASSGIGKATAKALAKAGAKVV MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GKVVJITGASSGIGKATAKALAKAGAKVV width=29 seqs=27 HDE_CANTR ( 322) DKVVLITGAGAGLGKEYAKWFAKYGAKVV 1 DHII_HUMAN ( 34) GKKVIVTGASKGIGREMAYHLAKMGAHVV 1 YINL_LISMO ( 5) NKVIIITGASSGIGKATALLLAEKGAKLV 1 HDHA_ECOLI ( 11) GKCAIITGAGAGIGKEIAITFATAGASVV 1 ENTA_ECOLI ( 5) GKNVWVTGAGKGIGYATALAFVEAGAKVT 1 HDE_CANTR ( 8) DKVVIITGAGGGLGKYYSLEFAKLGAKVV 1 RIDH_KLEAE ( 14) GKVAAITGAASGIGLECARTLLGAGAKVV 1 BUDC_KLETE ( 2) QKVALVTGAGQGIGKAIALRLVKDGFAVA 1 DHGB_BACME ( 7) GKVVVITGSSTGLGKSMAIRFATEKAKVV 1 AP27_MOUSE ( 7) GLRALVTGAGKGIGRDTVKALHASGAKVV 1 YRTP_BACSU ( 6) HKTALITGGGRGIGRATALALAKEGVNIG 1 DHMA_FLAS1 ( 14) GKAAIVTGAAGGIGRATVEAYLREGASVV 1 BA72_EUBSP ( 6) DKVTIITGGTRGIGFAAAKIFIDNGAKVS 1 DHB3_HUMAN ( 48) GQWAVITGAGDGIGKAYSFELAKRGLNVV 1 3BHD_COMTE ( 6) GKVALVTGGASGVGLEVVKLLLGEGAKVA 1 FIXR_BRAJA ( 36) PKVMLLTGASRGIGHATAKLFSEAGWRII 1 FVT1_HUMAN ( 32) GAHVVVTGGSSGIGKCIAIECYKQGAFIT 1 BDH_HUMAN ( 55) SKAVLVTGCDSGFGFSLAKHLHSKGFLVF 1 PCR_PEA ( 86) KGNVVITGASSGLGLATAKALAESGKWHV 1 DHB2_HUMAN ( 82) QKAVLVTGGDCGLGHALCKYLDELGFTVF 1 2BHD_STREX ( 6) GKTVIITGGARGLGAEAARQAVAAGARVV 1 LIGD_PSEPA ( 6) DQVAFITGGASGAGFGQAKVFGQAGAKIV 1 NODG_RHIME ( 6) GRKALVTGASGAIGGAIARVLHAQGAIVG 1 DHES_HUMAN ( 2) RTVVLITGCSSGIGLHLAVRLASDPSQSF 1 DHCA_HUMAN ( 4) IHVALVTGGNKGIGLAIVRDLCRLFSGDV 1 BPHB_PSEPS ( 5) GEAVLITGGASGLGRALVDRFVAEAKVAV 1 MAS1_AGRRA ( 245) SPVILVSGSNRGVGKAIAEDLIAHGYRLS 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKVVJITGASSGIGKATAKALAKAGAKVV MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 29 n= 9071 bayes= 8.38786 E= 2.0e-157 -259 -306 135 -129 -348 214 96 -76 2 -341 -274 9 -25 132 -19 26 -200 -346 -322 -270 -129 -306 -206 -17 -352 -135 91 -351 338 -135 -273 -165 -30 128 -11 -182 -46 -347 -320 -274 3 110 -293 -229 -268 -397 56 -109 15 -239 -206 37 -317 -179 -63 -242 9 259 131 -285 176 -294 -644 -585 -376 -625 -510 66 -563 -301 44 -545 -568 -513 -574 -490 -58 238 -472 -444 -150 -251 -559 -481 11 -532 -366 207 -450 234 -162 -444 -462 -370 -439 -389 -314 79 177 -313 -514 -343 -722 -691 -442 -757 -711 316 -681 -106 -347 -656 -674 -663 -731 -644 -443 239 -633 -567 -369 -263 -460 -490 -463 -501 -394 -384 -411 -493 -356 -292 -450 -350 -422 -24 398 -379 -434 -481 -543 -516 -527 -593 -662 345 -530 -712 -574 -725 -665 -492 -593 -574 -569 -510 -610 -699 -553 -615 220 256 -629 -624 -590 184 -549 -606 -640 -618 -543 -505 -467 -505 -587 33 -349 -480 -566 -611 92 -395 68 -323 -571 163 -270 -642 -356 -633 -593 104 -446 -312 -437 215 -54 -600 -556 -460 -53 131 -25 -118 -337 7 -130 -341 144 -328 -261 -149 -277 66 169 212 -37 -334 -312 -260 -183 -327 -318 -379 -485 335 -342 -505 -362 -547 -451 -274 -423 -375 -366 -290 -404 -487 -378 -431 -207 -286 -474 -461 -50 -554 -424 344 -420 99 -145 -417 -483 -395 -457 -404 -324 38 -360 -337 -543 -516 -527 -593 -662 345 -530 -712 -574 -725 -665 -492 -593 -574 -569 -510 -610 -699 -553 -615 -137 -322 -287 -206 141 -131 187 -335 255 83 -289 -228 -352 -125 180 -247 -256 -346 -339 34 235 113 -81 131 -330 -137 43 -322 -226 -329 -266 -229 -368 -196 -270 13 -222 -231 -316 -18 -54 150 -471 -393 -205 -436 -277 187 -360 69 139 -349 -382 23 -355 -289 200 -52 -245 185 267 123 -429 -385 -362 -280 -364 -348 -387 -364 -302 -378 -438 -347 -388 14 -257 63 -350 -399 -264 -240 -37 45 -6 -366 -167 81 245 82 -211 -195 -306 -117 139 -200 -202 -92 -286 33 55 -283 49 98 -320 -339 182 -69 -105 7 -246 -155 -278 64 139 -168 36 -31 163 29 -160 150 -662 -607 312 -651 -344 -273 -571 255 -237 -532 -569 -458 -539 -517 -457 -360 -253 68 172 142 -72 -369 -219 -137 225 43 -344 22 -159 -340 -385 -287 -346 -63 -222 74 -253 28 55 -298 -24 160 -335 -45 -129 -339 212 -326 -259 -149 -274 66 57 28 36 -332 -310 -258 78 -296 50 159 -333 -335 98 -337 69 5 28 8 -273 135 -14 28 -186 -330 -308 29 -190 -323 -302 -364 -98 326 -327 -492 -127 -536 -438 -259 -108 -361 -351 -282 -399 -478 -364 -417 257 -60 -382 -333 61 -250 -308 -269 -42 -167 -235 -335 -418 -297 -337 4 -223 -105 91 -47 -119 -293 -186 -116 -16 -127 98 -73 258 -126 -255 81 -274 66 104 28 -36 -116 162 -256 -137 -117 -183 -322 -275 -435 -49 67 -330 -124 -219 -345 -312 -301 -304 -188 -168 310 -334 -377 -72 -150 -419 -367 106 -85 -277 -4 -355 -210 -183 -354 -354 -306 -340 -25 7 279 -286 -290 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKVVJITGASSGIGKATAKALAKAGAKVV MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 29 nsites= 27 E= 2.0e-157 0.000000 0.000000 0.148148 0.000000 0.000000 0.481481 0.037037 0.037037 0.037037 0.000000 0.000000 0.037037 0.037037 0.074074 0.037037 0.074074 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.037037 0.000000 0.037037 0.037037 0.000000 0.629630 0.037037 0.000000 0.000000 0.037037 0.074074 0.037037 0.000000 0.037037 0.000000 0.000000 0.000000 0.148148 0.037037 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.074074 0.000000 0.000000 0.074074 0.000000 0.000000 0.037037 0.000000 0.074074 0.481481 0.037037 0.000000 0.407407 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.074074 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.444444 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.259259 0.000000 0.481481 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.148148 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.518519 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.444444 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.962963 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.518519 0.074074 0.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.074074 0.000000 0.000000 0.000000 0.000000 0.222222 0.000000 0.074074 0.000000 0.000000 0.296296 0.000000 0.000000 0.000000 0.000000 0.000000 0.074074 0.000000 0.000000 0.000000 0.296296 0.037037 0.000000 0.000000 0.000000 0.074074 0.037037 0.037037 0.000000 0.000000 0.111111 0.000000 0.000000 0.148148 0.000000 0.000000 0.000000 0.000000 0.037037 0.185185 0.333333 0.037037 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.962963 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.592593 0.000000 0.259259 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.074074 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.111111 0.037037 0.074074 0.000000 0.333333 0.185185 0.000000 0.000000 0.000000 0.000000 0.185185 0.000000 0.000000 0.000000 0.000000 0.037037 0.518519 0.037037 0.037037 0.222222 0.000000 0.037037 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.074074 0.000000 0.000000 0.000000 0.037037 0.074074 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.222222 0.000000 0.148148 0.074074 0.000000 0.000000 0.037037 0.000000 0.000000 0.259259 0.037037 0.000000 0.111111 0.703704 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.074074 0.000000 0.185185 0.000000 0.000000 0.000000 0.000000 0.037037 0.074074 0.037037 0.000000 0.000000 0.111111 0.333333 0.185185 0.000000 0.000000 0.000000 0.000000 0.148148 0.000000 0.000000 0.037037 0.000000 0.037037 0.185185 0.000000 0.074074 0.111111 0.000000 0.000000 0.074074 0.037037 0.000000 0.111111 0.000000 0.000000 0.000000 0.037037 0.148148 0.000000 0.074074 0.074074 0.037037 0.037037 0.037037 0.037037 0.000000 0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 0.555556 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.370370 0.037037 0.037037 0.000000 0.000000 0.037037 0.111111 0.074074 0.000000 0.111111 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.148148 0.000000 0.037037 0.185185 0.000000 0.037037 0.185185 0.000000 0.074074 0.000000 0.000000 0.259259 0.000000 0.000000 0.000000 0.000000 0.037037 0.074074 0.074074 0.074074 0.000000 0.000000 0.000000 0.222222 0.000000 0.074074 0.185185 0.000000 0.000000 0.037037 0.000000 0.074074 0.111111 0.037037 0.037037 0.000000 0.074074 0.037037 0.074074 0.000000 0.000000 0.000000 0.037037 0.037037 0.000000 0.000000 0.000000 0.037037 0.851852 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.592593 0.000000 0.000000 0.000000 0.111111 0.000000 0.000000 0.000000 0.074074 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.074074 0.000000 0.037037 0.037037 0.037037 0.037037 0.000000 0.000000 0.000000 0.037037 0.037037 0.037037 0.037037 0.370370 0.037037 0.000000 0.074074 0.000000 0.037037 0.111111 0.074074 0.037037 0.037037 0.037037 0.000000 0.037037 0.000000 0.037037 0.000000 0.000000 0.000000 0.037037 0.148148 0.000000 0.074074 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.629630 0.000000 0.000000 0.074074 0.000000 0.000000 0.000000 0.111111 0.074074 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.074074 0.074074 0.555556 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKVVJITGASSGIGKATAKALAKAGAKVV MEME-2 regular expression -------------------------------------------------------------------------------- GKV[VA][LI][IV]TG[AG][GSA]SG[IL]GK[AE][TI]AKX[LF]AKAGAKVV -------------------------------------------------------------------------------- Time 1.81 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 2BHD_STREX 2.29e-35 5_[2(5.37e-17)]_115_[1(1.02e-25)]_\ 66 3BHD_COMTE 2.98e-27 5_[2(4.12e-18)]_114_[1(2.27e-16)]_\ 65 ADH_DROME 1.15e-17 5_[2(8.93e-07)]_115_[1(5.98e-18)]_\ 66 AP27_MOUSE 7.33e-38 6_[2(4.56e-19)]_111_[1(3.99e-26)]_\ 58 BA72_EUBSP 5.46e-35 5_[2(1.47e-18)]_120_[1(9.52e-24)]_\ 55 BDH_HUMAN 5.87e-31 54_[2(1.60e-17)]_122_[1(5.13e-21)]_\ 98 BPHB_PSEPS 2.40e-14 4_[2(3.68e-14)]_117_[1(3.12e-07)]_\ 85 BUDC_KLETE 1.10e-42 1_[2(4.73e-20)]_119_[1(5.30e-30)]_\ 52 DHES_HUMAN 5.92e-30 1_[2(5.71e-15)]_122_[1(1.66e-22)]_\ 135 DHGB_BACME 1.09e-38 6_[2(1.66e-19)]_122_[1(1.35e-26)]_\ 65 DHII_HUMAN 3.05e-26 33_[2(1.24e-22)]_118_[1(5.74e-11)]_\ 72 DHMA_FLAS1 1.53e-34 13_[2(1.10e-18)]_120_[1(2.99e-23)]_\ 68 ENTA_ECOLI 6.84e-37 4_[2(2.25e-21)]_108_[1(7.46e-23)]_\ 67 FIXR_BRAJA 1.51e-39 35_[2(5.94e-18)]_122_[1(4.48e-29)]_\ 52 GUTD_ECOLI 2.64e-22 1_[2(3.65e-09)]_121_[1(2.61e-20)]_\ 68 HDE_CANTR 4.06e-38 7_[2(2.85e-21)]_124_[1(2.69e-19)]_\ 121_[2(1.60e-24)]_114_[1(3.64e-22)]_402 HDHA_ECOLI 5.05e-39 10_[2(1.39e-21)]_117_[1(7.91e-25)]_\ 59 LIGD_PSEPA 1.20e-27 5_[2(3.31e-16)]_120_[1(7.33e-19)]_\ 111 NODG_RHIME 6.74e-38 5_[2(8.57e-16)]_115_[1(1.93e-29)]_\ 56 RIDH_KLEAE 3.20e-35 13_[2(1.14e-20)]_115_[1(7.15e-22)]_\ 52 YINL_LISMO 2.00e-26 4_[2(5.86e-22)]_118_[1(1.15e-11)]_\ 57 YRTP_BACSU 1.77e-38 5_[2(9.06e-19)]_118_[1(5.05e-27)]_\ 46 CSGA_MYXXA 9.45e-17 85_[1(3.40e-20)]_41 DHB2_HUMAN 1.89e-32 81_[2(3.50e-17)]_119_[1(5.51e-23)]_\ 118 DHB3_HUMAN 3.88e-31 47_[2(2.59e-18)]_119_[1(2.61e-20)]_\ 75 DHCA_HUMAN 5.56e-13 3_[2(1.18e-14)]_162_[1(2.45e-05)]_\ 42 FABI_ECOLI 1.02e-14 5_[2(5.30e-05)]_122_[1(1.01e-16)]_\ 66 FVT1_HUMAN 2.67e-31 31_[2(1.22e-17)]_123_[1(3.23e-21)]_\ 109 HMTR_LEIMA 2.84e-25 5_[2(4.71e-12)]_156_[1(1.53e-20)]_\ 57 MAS1_AGRRA 3.42e-14 244_[2(1.10e-13)]_116_[1(4.46e-08)]_\ 47 PCR_PEA 7.96e-14 85_[2(3.21e-17)]_285 RFBB_NEIGO 1.35e-09 5_[2(1.26e-08)]_128_[1(4.46e-08)]_\ 144 YURA_MYXXA 9.31e-21 157_[1(2.64e-24)]_61 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (2) found. ******************************************************************************** CPU: Timothys-Mac-Mini.local ********************************************************************************