<dreme version="5.4.0" release="Tue Mar 9 17:38:20 2021 -0800">
  <model>
    <command_line>dreme -norc -oc results/dreme4 -verbosity 1 -p common/Klf1-200-100.fa -n common/Klf1-200-100-shuffled.py2.fa</command_line>
    <positives name="Klf1-200-100" count="169" file="common/Klf1-200-100.fa" last_mod_date="Sun Mar 01 14:58:12 PST 2020" />
    <negatives name="Klf1-200-100-shuffled.py2" count="169" from="file" file="common/Klf1-200-100-shuffled.py2.fa" last_mod_date="Sun Mar 01 14:58:12 PST 2020" />
    <alphabet name="DNA" like="dna">
      <letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
      <letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
      <letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
      <letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
      <letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
      <letter id="V" symbol="V" equals="ACG" name="Not T"/>
      <letter id="H" symbol="H" equals="ACT" name="Not G"/>
      <letter id="D" symbol="D" equals="AGT" name="Not C"/>
      <letter id="B" symbol="B" equals="CGT" name="Not A"/>
      <letter id="M" symbol="M" equals="AC" name="Amino"/>
      <letter id="R" symbol="R" equals="AG" name="Purine"/>
      <letter id="W" symbol="W" equals="AT" name="Weak"/>
      <letter id="S" symbol="S" equals="CG" name="Strong"/>
      <letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
      <letter id="K" symbol="K" equals="GT" name="Keto"/>
    </alphabet>
    <strands>given</strands>
    <background A="0.244" C="0.253" G="0.250" T="0.253" from="dataset"/>
    <stop evalue="0.05"/>
    <ngen>100</ngen>
    <add_pv_thresh>0.01</add_pv_thresh>
    <seed>1</seed>
    <host>Timothys-Mac-Mini.local</host>
    <when>Sat May 22 12:11:07 PDT 2021</when>
  </model>
  <motifs>
    <motif id="m01" alt="DREME-1" seq="WGATAA" length="6" nsites="34" p="32" n="3" pvalue="5.4e-008" evalue="1.3e-003" unerased_evalue="1.3e-003">
      <pos A="0.676471" C="0.000000" G="0.000000" T="0.323529"/>
      <pos A="0.000000" C="0.000000" G="1.000000" T="0.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="0.000000" T="1.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <match seq="AGATAA" p="22" n="2" pvalue="9.8e-006" evalue="2.3e-001"/>
      <match seq="TGATAA" p="11" n="1" pvalue="2.8e-003" evalue="6.6e+001"/>
    </motif>
    <motif id="m02" alt="DREME-2" seq="GGGYGT" length="6" nsites="35" p="33" n="5" pvalue="6.0e-007" evalue="1.4e-002" unerased_evalue="1.4e-002">
      <pos A="0.000000" C="0.000000" G="1.000000" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="1.000000" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="1.000000" T="0.000000"/>
      <pos A="0.000000" C="0.400000" G="0.000000" T="0.600000"/>
      <pos A="0.000000" C="0.000000" G="1.000000" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="0.000000" T="1.000000"/>
      <match seq="GGGTGT" p="20" n="4" pvalue="5.2e-004" evalue="1.2e+001"/>
      <match seq="GGGCGT" p="13" n="1" pvalue="7.5e-004" evalue="1.7e+001"/>
    </motif>
  </motifs>
  <run_time cpu="1.73" real="1.73" stop="evalue"/>
</dreme>
