******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.2 (Release date: Thu Sep 03 15:00:54 2015 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= Puf3p-200.s ALPHABET= ACGU Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ sacCer3_chrI_48232_48332 1.0000 100 sacCer3_chrI_71777_71877 1.0000 100 sacCer3_chrI_72016_72116 1.0000 100 sacCer3_chrI_73291_73391 1.0000 100 sacCer3_chrI_73321_73421 1.0000 100 sacCer3_chrI_73356_73456 1.0000 100 sacCer3_chrI_79455_79555 1.0000 100 sacCer3_chrI_93336_93436 1.0000 100 sacCer3_chrI_120749_1208 1.0000 100 sacCer3_chrI_142343_1424 1.0000 100 sacCer3_chrI_142963_1430 1.0000 100 sacCer3_chrI_143283_1433 1.0000 100 sacCer3_chrI_56912_57012 1.0000 100 sacCer3_chrI_74949_75049 1.0000 100 sacCer3_chrI_90825_90925 1.0000 100 sacCer3_chrI_106130_1062 1.0000 100 sacCer3_chrI_139363_1394 1.0000 100 sacCer3_chrI_139577_1396 1.0000 100 sacCer3_chrI_141262_1413 1.0000 100 sacCer3_chrI_150820_1509 1.0000 100 sacCer3_chrII_38816_3891 1.0000 100 sacCer3_chrII_93391_9349 1.0000 100 sacCer3_chrII_111177_111 1.0000 100 sacCer3_chrII_146864_146 1.0000 100 sacCer3_chrII_169390_169 1.0000 100 sacCer3_chrII_174563_174 1.0000 100 sacCer3_chrII_236818_236 1.0000 100 sacCer3_chrII_236884_236 1.0000 100 sacCer3_chrII_236995_237 1.0000 100 sacCer3_chrII_244253_244 1.0000 100 sacCer3_chrII_256804_256 1.0000 100 sacCer3_chrII_256827_256 1.0000 100 sacCer3_chrII_260488_260 1.0000 100 sacCer3_chrII_284345_284 1.0000 100 sacCer3_chrII_316594_316 1.0000 100 sacCer3_chrII_333867_333 1.0000 100 sacCer3_chrII_349356_349 1.0000 100 sacCer3_chrII_394835_394 1.0000 100 sacCer3_chrII_409627_409 1.0000 100 sacCer3_chrII_436701_436 1.0000 100 sacCer3_chrII_452695_452 1.0000 100 sacCer3_chrII_452727_452 1.0000 100 sacCer3_chrII_453200_453 1.0000 100 sacCer3_chrII_479032_479 1.0000 100 sacCer3_chrII_516288_516 1.0000 100 sacCer3_chrII_517185_517 1.0000 100 sacCer3_chrII_528764_528 1.0000 100 sacCer3_chrII_536187_536 1.0000 100 sacCer3_chrII_536233_536 1.0000 100 sacCer3_chrII_556313_556 1.0000 100 sacCer3_chrII_556418_556 1.0000 100 sacCer3_chrII_556467_556 1.0000 100 sacCer3_chrII_557902_558 1.0000 100 sacCer3_chrII_559558_559 1.0000 100 sacCer3_chrII_596022_596 1.0000 100 sacCer3_chrII_605497_605 1.0000 100 sacCer3_chrII_608754_608 1.0000 100 sacCer3_chrII_608929_609 1.0000 100 sacCer3_chrII_608966_609 1.0000 100 sacCer3_chrII_623426_623 1.0000 100 sacCer3_chrII_634861_634 1.0000 100 sacCer3_chrII_722332_722 1.0000 100 sacCer3_chrII_731484_731 1.0000 100 sacCer3_chrII_741602_741 1.0000 100 sacCer3_chrII_768644_768 1.0000 100 sacCer3_chrII_768698_768 1.0000 100 sacCer3_chrII_781978_782 1.0000 100 sacCer3_chrII_10213_1031 1.0000 100 sacCer3_chrII_88407_8850 1.0000 100 sacCer3_chrII_109955_110 1.0000 100 sacCer3_chrII_110023_110 1.0000 100 sacCer3_chrII_110433_110 1.0000 100 sacCer3_chrII_134063_134 1.0000 100 sacCer3_chrII_164029_164 1.0000 100 sacCer3_chrII_177781_177 1.0000 100 sacCer3_chrII_186759_186 1.0000 100 sacCer3_chrII_187866_187 1.0000 100 sacCer3_chrII_272689_272 1.0000 100 sacCer3_chrII_296238_296 1.0000 100 sacCer3_chrII_338654_338 1.0000 100 sacCer3_chrII_370786_370 1.0000 100 sacCer3_chrII_372002_372 1.0000 100 sacCer3_chrII_376509_376 1.0000 100 sacCer3_chrII_395306_395 1.0000 100 sacCer3_chrII_406476_406 1.0000 100 sacCer3_chrII_414085_414 1.0000 100 sacCer3_chrII_418571_418 1.0000 100 sacCer3_chrII_419076_419 1.0000 100 sacCer3_chrII_488771_488 1.0000 100 sacCer3_chrII_492162_492 1.0000 100 sacCer3_chrII_502316_502 1.0000 100 sacCer3_chrII_531780_531 1.0000 100 sacCer3_chrII_564432_564 1.0000 100 sacCer3_chrII_586486_586 1.0000 100 sacCer3_chrII_591631_591 1.0000 100 sacCer3_chrII_598991_599 1.0000 100 sacCer3_chrII_612086_612 1.0000 100 sacCer3_chrII_613283_613 1.0000 100 sacCer3_chrII_617922_618 1.0000 100 sacCer3_chrII_664908_665 1.0000 100 sacCer3_chrII_668411_668 1.0000 100 sacCer3_chrII_680669_680 1.0000 100 sacCer3_chrII_681031_681 1.0000 100 sacCer3_chrII_681797_681 1.0000 100 sacCer3_chrII_729667_729 1.0000 100 sacCer3_chrII_735628_735 1.0000 100 sacCer3_chrII_735654_735 1.0000 100 sacCer3_chrII_743545_743 1.0000 100 sacCer3_chrII_770259_770 1.0000 100 sacCer3_chrII_784956_785 1.0000 100 sacCer3_chrIII_35863_359 1.0000 100 sacCer3_chrIII_52356_524 1.0000 100 sacCer3_chrIII_60704_608 1.0000 100 sacCer3_chrIII_60735_608 1.0000 100 sacCer3_chrIII_119154_11 1.0000 100 sacCer3_chrIII_139045_13 1.0000 100 sacCer3_chrIII_240011_24 1.0000 100 sacCer3_chrIII_23904_240 1.0000 100 sacCer3_chrIII_120853_12 1.0000 100 sacCer3_chrIII_141395_14 1.0000 100 sacCer3_chrIII_158886_15 1.0000 100 sacCer3_chrIII_159033_15 1.0000 100 sacCer3_chrIII_162837_16 1.0000 100 sacCer3_chrIII_163262_16 1.0000 100 sacCer3_chrIII_172827_17 1.0000 100 sacCer3_chrIII_194342_19 1.0000 100 sacCer3_chrIII_209832_20 1.0000 100 sacCer3_chrIII_250281_25 1.0000 100 sacCer3_chrIII_261063_26 1.0000 100 sacCer3_chrIV_38771_3887 1.0000 100 sacCer3_chrIV_45894_4599 1.0000 100 sacCer3_chrIV_45938_4603 1.0000 100 sacCer3_chrIV_90803_9090 1.0000 100 sacCer3_chrIV_99241_9934 1.0000 100 sacCer3_chrIV_109508_109 1.0000 100 sacCer3_chrIV_111058_111 1.0000 100 sacCer3_chrIV_118555_118 1.0000 100 sacCer3_chrIV_130013_130 1.0000 100 sacCer3_chrIV_133443_133 1.0000 100 sacCer3_chrIV_184968_185 1.0000 100 sacCer3_chrIV_192324_192 1.0000 100 sacCer3_chrIV_233877_233 1.0000 100 sacCer3_chrIV_246005_246 1.0000 100 sacCer3_chrIV_258889_258 1.0000 100 sacCer3_chrIV_270000_270 1.0000 100 sacCer3_chrIV_293292_293 1.0000 100 sacCer3_chrIV_309383_309 1.0000 100 sacCer3_chrIV_309415_309 1.0000 100 sacCer3_chrIV_322970_323 1.0000 100 sacCer3_chrIV_336193_336 1.0000 100 sacCer3_chrIV_371860_371 1.0000 100 sacCer3_chrIV_372547_372 1.0000 100 sacCer3_chrIV_412985_413 1.0000 100 sacCer3_chrIV_413013_413 1.0000 100 sacCer3_chrIV_428446_428 1.0000 100 sacCer3_chrIV_428482_428 1.0000 100 sacCer3_chrIV_439325_439 1.0000 100 sacCer3_chrIV_449243_449 1.0000 100 sacCer3_chrIV_453676_453 1.0000 100 sacCer3_chrIV_453710_453 1.0000 100 sacCer3_chrIV_472669_472 1.0000 100 sacCer3_chrIV_490901_491 1.0000 100 sacCer3_chrIV_503889_503 1.0000 100 sacCer3_chrIV_508734_508 1.0000 100 sacCer3_chrIV_509148_509 1.0000 100 sacCer3_chrIV_509285_509 1.0000 100 sacCer3_chrIV_509454_509 1.0000 100 sacCer3_chrIV_540425_540 1.0000 100 sacCer3_chrIV_540508_540 1.0000 100 sacCer3_chrIV_552956_553 1.0000 100 sacCer3_chrIV_564798_564 1.0000 100 sacCer3_chrIV_576910_577 1.0000 100 sacCer3_chrIV_580425_580 1.0000 100 sacCer3_chrIV_592860_592 1.0000 100 sacCer3_chrIV_600891_600 1.0000 100 sacCer3_chrIV_602048_602 1.0000 100 sacCer3_chrIV_603412_603 1.0000 100 sacCer3_chrIV_632011_632 1.0000 100 sacCer3_chrIV_632874_632 1.0000 100 sacCer3_chrIV_682181_682 1.0000 100 sacCer3_chrIV_695255_695 1.0000 100 sacCer3_chrIV_704944_705 1.0000 100 sacCer3_chrIV_705300_705 1.0000 100 sacCer3_chrIV_762742_762 1.0000 100 sacCer3_chrIV_773623_773 1.0000 100 sacCer3_chrIV_840392_840 1.0000 100 sacCer3_chrIV_893923_894 1.0000 100 sacCer3_chrIV_911306_911 1.0000 100 sacCer3_chrIV_915932_916 1.0000 100 sacCer3_chrIV_915979_916 1.0000 100 sacCer3_chrIV_917163_917 1.0000 100 sacCer3_chrIV_924868_924 1.0000 100 sacCer3_chrIV_927369_927 1.0000 100 sacCer3_chrIV_929172_929 1.0000 100 sacCer3_chrIV_937531_937 1.0000 100 sacCer3_chrIV_961374_961 1.0000 100 sacCer3_chrIV_1055284_10 1.0000 100 sacCer3_chrIV_1068362_10 1.0000 100 sacCer3_chrIV_1093820_10 1.0000 100 sacCer3_chrIV_1111675_11 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -rna -nmotifs 3 -oc motif.Puf3p Puf3p-200.s model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 8 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 200 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 20000 N= 200 shuffle= -1 sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.323 C 0.170 G 0.142 U 0.365 Background letter frequencies (from dataset with add-one prior applied): A 0.323 C 0.170 G 0.142 U 0.365 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 10 sites = 64 llr = 539 E-value = 3.7e-031 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 23:::a5a:a pos.-specific C 63::2:1::: probability G :1:a:::::: matrix U 23a:8:3:a: bits 2.8 * 2.5 * 2.3 * 2.0 * Relative 1.7 * Entropy 1.4 ** * *** (12.2 bits) 1.1 **** *** 0.8 * **** *** 0.6 * **** *** 0.3 * ******** 0.0 ---------- Multilevel CUUGUAAAUA consensus UC U sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- sacCer3_chrIV_632874_632 37 2.17e-06 CAGAAAUGAG CCUGUAAAUA UCAAUAACUU sacCer3_chrIII_60735_608 12 2.17e-06 CGAUUUUUUU CCUGUAAAUA CAAACACAUG sacCer3_chrIII_60704_608 43 2.17e-06 CGAUUUUUUU CCUGUAAAUA CAAACACAUG sacCer3_chrIII_35863_359 47 2.17e-06 AGAGCCAAAU CCUGUAAAUA CUUUGUCUAC sacCer3_chrII_722332_722 49 2.17e-06 AAUAAUAAUA CCUGUAAAUA UCUCAACAUA sacCer3_chrII_536187_536 46 2.17e-06 GUUCGUUAUU CCUGUAAAUA AAGUUAUAUG sacCer3_chrII_768698_768 9 3.99e-06 UCAAUAUG CGUGUAAAUA CUAGUUUUCG sacCer3_chrII_768644_768 63 3.99e-06 CUUCAAUAUG CGUGUAAAUA CUAGUUUUCG sacCer3_chrIV_937531_937 42 1.28e-05 UCCCAUUCGU CAUGUAAAUA UAUAAACUGU sacCer3_chrIV_540425_540 46 1.28e-05 AGAUUUCGUA CUUGUAAAUA AAAUAGGUGA sacCer3_chrIV_270000_270 38 1.28e-05 AUAACGCGAG CUUGUAAAUA UCUAUAUACC sacCer3_chrII_784956_785 27 1.28e-05 CCGUUUCGUU CAUGUAAAUA UUCAAAUAUA sacCer3_chrII_586486_586 46 1.28e-05 AUUAGAUAUU CUUGUAAAUA UAUGAGGUCU sacCer3_chrII_110023_110 49 1.28e-05 CUCAAUAUCC CUUGUAAAUA AAAGGCAGAG sacCer3_chrII_741602_741 45 1.28e-05 GUUUGGUAUC CUUGUAAAUA AAUAUGUGUG sacCer3_chrII_608966_609 45 1.28e-05 UCCUUUUAUA CUUGUAAAUA UUUUUACCAG sacCer3_chrII_608929_609 82 1.28e-05 UCCUUUUAUA CUUGUAAAUA UUUUUACCA sacCer3_chrIV_1111675_11 44 1.64e-05 AUUAUAGUAU CCUGUACAUA UAAAAUAACG sacCer3_chrIII_209832_20 50 1.64e-05 CCACCCAUCU CCUGUAUAUA AGAAAAAUAG sacCer3_chrIII_119154_11 61 1.64e-05 UAAACUUAAG CCUGUAUAUA GAAACUUAAU sacCer3_chrIV_603412_603 57 4.05e-05 AUUAUUCUAA CAUGUACAUA CCUGUAUAGU sacCer3_chrIV_372547_372 42 4.05e-05 AAGUCAUGGC CUUGUAUAUA CAAAUUAAAU sacCer3_chrIV_99241_9934 35 4.05e-05 ACUAUUCAAU CAUGUACAUA CAUCAUCAAA sacCer3_chrIII_158886_15 44 4.05e-05 CUGUCGUCUA CUUGUACAUA AUCACAGGGA sacCer3_chrII_735654_735 72 4.05e-05 CGAACAUCCU CAUGUAUAUA ACCUAUUGUA sacCer3_chrII_735628_735 46 4.05e-05 CGAACAUCCU CAUGUAUAUA ACCUAUUGUA sacCer3_chrII_598991_599 6 4.05e-05 GAACA UCUGUAAAUA GCCAUUGCUU sacCer3_chrII_177781_177 46 4.05e-05 GUUUAAACAU UCUGUAAAUA UUUAAACAUA sacCer3_chrII_146864_146 45 4.05e-05 ACCAUGUAUA CAUGUAUAUA ACUAUUGAAA sacCer3_chrIV_449243_449 44 4.96e-05 GCCUUUUGAU CAUGCAAAUA UAUUACGGUA sacCer3_chrIV_246005_246 44 4.96e-05 AAAGAAUCAU ACUGUAAAUA CUUUUCAGAA sacCer3_chrIV_90803_9090 39 4.96e-05 AAAAACUGUA CUUGCAAAUA AUCAUAUCAC sacCer3_chrIV_552956_553 39 7.93e-05 AAUAUACGUU UAUGUAAAUA AUAUCUUUUU sacCer3_chrII_596022_596 47 7.93e-05 CAGAGAUUAA UUUGUAAAUA AAAGCAGAAA sacCer3_chrII_244253_244 56 7.93e-05 CUAUAUUCUA UAUGUAAAUA GUUUUUAUAU sacCer3_chrII_111177_111 57 7.93e-05 AAUUCAUCUC UUUGUAAAUA GUGUUAUACC sacCer3_chrIV_924868_924 52 1.09e-04 AUUUUACCCA AUUGUAAAUA GUAAAAGACC sacCer3_chrIV_704944_705 44 1.09e-04 AAAAUUUGUC CUUGUAGAUA UUAAAUGGCU sacCer3_chrIV_453710_453 3 1.09e-04 AG CGUGCAUAUA UAUUUUUAUC sacCer3_chrIV_453676_453 37 1.09e-04 UCCUUUACAG CGUGCAUAUA UAUUUUUAUC sacCer3_chrIV_133443_133 48 1.09e-04 CUAUCUUUCU AAUGUAAAUA AUUUCCAGUU sacCer3_chrII_729667_729 49 1.09e-04 UCUUACUAAU UCUGUAUAUA AUAUAGCAUA sacCer3_chrIV_258889_258 45 1.25e-04 GGUGCUCUCA UCUGCAAAUA UUUACCACGC sacCer3_chrII_668411_668 45 1.25e-04 UUCAAGAUUA ACUGUAUAUA AAUAGAGAUG sacCer3_chrII_134063_134 43 1.25e-04 AUAUAUUUUC CAUGCACAUA AAAUAGAAAU sacCer3_chrII_664908_665 24 1.27e-04 UAGAUAUAUA ACUGCAAAUA CACACAUACA sacCer3_chrI_56912_57012 7 1.28e-04 AAAGCU CGUGUAAGUA UCACUUUUAG sacCer3_chrII_284345_284 47 1.32e-04 CAUAUAUCAA CUUGUAAGUA UCACAGUAAA sacCer3_chrII_395306_395 81 1.40e-04 UAUAAGAGUA UGUGUACAUA AUAACAAUUU sacCer3_chrIV_1068362_10 46 1.79e-04 AAUUUAAAAA UUUGUAUAUA AAAAAAUAUA sacCer3_chrIII_23904_240 45 1.79e-04 UUCCGCUCUA UAUGUAUAUA UUUACGUAAC sacCer3_chrIII_52356_524 74 1.79e-04 GUAUAUUUUC AGUGUAUAUA CAUACAUUCU sacCer3_chrIV_503889_503 37 2.20e-04 AUUAUAUAUU CCUGUGAAUA UUUUUUAACU sacCer3_chrIV_45938_4603 5 2.20e-04 UUAU AUUGUAUAUA AAUUUUGUUU sacCer3_chrIV_45894_4599 49 2.20e-04 UAUUACUUAU AUUGUAUAUA AAUUUUGUUU sacCer3_chrII_236995_237 34 2.20e-04 GAGUUGUAUA AAUGUAUAUA UAUAACUUUA sacCer3_chrI_79455_79555 45 2.20e-04 UAAAUAGGUA AUUGUAUAUA AAAAUGUGAA sacCer3_chrII_536233_536 57 2.39e-04 UCUUCUACUU ACUGCACAUA AUACUUCAUC sacCer3_chrIV_293292_293 33 2.55e-04 UGCAUAAAGU UGUGUAGAUA UAAAUUUAAC sacCer3_chrII_394835_394 15 2.73e-04 CUGAAUUUUA UAUGUAGAUA AAAUUUUAGU sacCer3_chrIV_192324_192 38 2.99e-04 UAAAAUUAUC UAUGCAUAUA UAUAACUCAA sacCer3_chrII_414085_414 77 2.99e-04 AAUACGUAUG UAUGCACAUA UACCUACAUA sacCer3_chrII_528764_528 48 3.16e-04 UGAUAUUUCU CCUGUAAAUU UACCUGAAUG sacCer3_chrII_110433_110 26 3.41e-04 GAACGUUUUC AUUGUAAGUA UCCAGAUUUU -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- sacCer3_chrIV_632874_632 2.2e-06 36_[1]_54 sacCer3_chrIII_60735_608 2.2e-06 11_[1]_79 sacCer3_chrIII_60704_608 2.2e-06 42_[1]_48 sacCer3_chrIII_35863_359 2.2e-06 46_[1]_44 sacCer3_chrII_722332_722 2.2e-06 48_[1]_42 sacCer3_chrII_536187_536 2.2e-06 45_[1]_45 sacCer3_chrII_768698_768 4e-06 8_[1]_82 sacCer3_chrII_768644_768 4e-06 62_[1]_28 sacCer3_chrIV_937531_937 1.3e-05 41_[1]_49 sacCer3_chrIV_540425_540 1.3e-05 45_[1]_45 sacCer3_chrIV_270000_270 1.3e-05 37_[1]_53 sacCer3_chrII_784956_785 1.3e-05 26_[1]_64 sacCer3_chrII_586486_586 1.3e-05 45_[1]_45 sacCer3_chrII_110023_110 1.3e-05 48_[1]_42 sacCer3_chrII_741602_741 1.3e-05 44_[1]_46 sacCer3_chrII_608966_609 1.3e-05 44_[1]_46 sacCer3_chrII_608929_609 1.3e-05 81_[1]_9 sacCer3_chrIV_1111675_11 1.6e-05 43_[1]_47 sacCer3_chrIII_209832_20 1.6e-05 49_[1]_41 sacCer3_chrIII_119154_11 1.6e-05 60_[1]_30 sacCer3_chrIV_603412_603 4e-05 56_[1]_34 sacCer3_chrIV_372547_372 4e-05 41_[1]_49 sacCer3_chrIV_99241_9934 4e-05 34_[1]_56 sacCer3_chrIII_158886_15 4e-05 43_[1]_47 sacCer3_chrII_735654_735 4e-05 71_[1]_19 sacCer3_chrII_735628_735 4e-05 45_[1]_45 sacCer3_chrII_598991_599 4e-05 5_[1]_85 sacCer3_chrII_177781_177 4e-05 45_[1]_45 sacCer3_chrII_146864_146 4e-05 44_[1]_46 sacCer3_chrIV_449243_449 5e-05 43_[1]_47 sacCer3_chrIV_246005_246 5e-05 43_[1]_47 sacCer3_chrIV_90803_9090 5e-05 38_[1]_52 sacCer3_chrIV_552956_553 7.9e-05 38_[1]_52 sacCer3_chrII_596022_596 7.9e-05 46_[1]_44 sacCer3_chrII_244253_244 7.9e-05 55_[1]_35 sacCer3_chrII_111177_111 7.9e-05 56_[1]_34 sacCer3_chrIV_924868_924 0.00011 51_[1]_39 sacCer3_chrIV_704944_705 0.00011 43_[1]_47 sacCer3_chrIV_453710_453 0.00011 2_[1]_88 sacCer3_chrIV_453676_453 0.00011 36_[1]_54 sacCer3_chrIV_133443_133 0.00011 47_[1]_43 sacCer3_chrII_729667_729 0.00011 48_[1]_42 sacCer3_chrIV_258889_258 0.00012 44_[1]_46 sacCer3_chrII_668411_668 0.00012 44_[1]_46 sacCer3_chrII_134063_134 0.00012 42_[1]_48 sacCer3_chrII_664908_665 0.00013 23_[1]_67 sacCer3_chrI_56912_57012 0.00013 6_[1]_84 sacCer3_chrII_284345_284 0.00013 46_[1]_44 sacCer3_chrII_395306_395 0.00014 80_[1]_10 sacCer3_chrIV_1068362_10 0.00018 45_[1]_45 sacCer3_chrIII_23904_240 0.00018 44_[1]_46 sacCer3_chrIII_52356_524 0.00018 73_[1]_17 sacCer3_chrIV_503889_503 0.00022 36_[1]_54 sacCer3_chrIV_45938_4603 0.00022 4_[1]_86 sacCer3_chrIV_45894_4599 0.00022 48_[1]_42 sacCer3_chrII_236995_237 0.00022 33_[1]_57 sacCer3_chrI_79455_79555 0.00022 44_[1]_46 sacCer3_chrII_536233_536 0.00024 56_[1]_34 sacCer3_chrIV_293292_293 0.00026 32_[1]_58 sacCer3_chrII_394835_394 0.00027 14_[1]_76 sacCer3_chrIV_192324_192 0.0003 37_[1]_53 sacCer3_chrII_414085_414 0.0003 76_[1]_14 sacCer3_chrII_528764_528 0.00032 47_[1]_43 sacCer3_chrII_110433_110 0.00034 25_[1]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=10 seqs=64 sacCer3_chrIV_632874_632 ( 37) CCUGUAAAUA 1 sacCer3_chrIII_60735_608 ( 12) CCUGUAAAUA 1 sacCer3_chrIII_60704_608 ( 43) CCUGUAAAUA 1 sacCer3_chrIII_35863_359 ( 47) CCUGUAAAUA 1 sacCer3_chrII_722332_722 ( 49) CCUGUAAAUA 1 sacCer3_chrII_536187_536 ( 46) CCUGUAAAUA 1 sacCer3_chrII_768698_768 ( 9) CGUGUAAAUA 1 sacCer3_chrII_768644_768 ( 63) CGUGUAAAUA 1 sacCer3_chrIV_937531_937 ( 42) CAUGUAAAUA 1 sacCer3_chrIV_540425_540 ( 46) CUUGUAAAUA 1 sacCer3_chrIV_270000_270 ( 38) CUUGUAAAUA 1 sacCer3_chrII_784956_785 ( 27) CAUGUAAAUA 1 sacCer3_chrII_586486_586 ( 46) CUUGUAAAUA 1 sacCer3_chrII_110023_110 ( 49) CUUGUAAAUA 1 sacCer3_chrII_741602_741 ( 45) CUUGUAAAUA 1 sacCer3_chrII_608966_609 ( 45) CUUGUAAAUA 1 sacCer3_chrII_608929_609 ( 82) CUUGUAAAUA 1 sacCer3_chrIV_1111675_11 ( 44) CCUGUACAUA 1 sacCer3_chrIII_209832_20 ( 50) CCUGUAUAUA 1 sacCer3_chrIII_119154_11 ( 61) CCUGUAUAUA 1 sacCer3_chrIV_603412_603 ( 57) CAUGUACAUA 1 sacCer3_chrIV_372547_372 ( 42) CUUGUAUAUA 1 sacCer3_chrIV_99241_9934 ( 35) CAUGUACAUA 1 sacCer3_chrIII_158886_15 ( 44) CUUGUACAUA 1 sacCer3_chrII_735654_735 ( 72) CAUGUAUAUA 1 sacCer3_chrII_735628_735 ( 46) CAUGUAUAUA 1 sacCer3_chrII_598991_599 ( 6) UCUGUAAAUA 1 sacCer3_chrII_177781_177 ( 46) UCUGUAAAUA 1 sacCer3_chrII_146864_146 ( 45) CAUGUAUAUA 1 sacCer3_chrIV_449243_449 ( 44) CAUGCAAAUA 1 sacCer3_chrIV_246005_246 ( 44) ACUGUAAAUA 1 sacCer3_chrIV_90803_9090 ( 39) CUUGCAAAUA 1 sacCer3_chrIV_552956_553 ( 39) UAUGUAAAUA 1 sacCer3_chrII_596022_596 ( 47) UUUGUAAAUA 1 sacCer3_chrII_244253_244 ( 56) UAUGUAAAUA 1 sacCer3_chrII_111177_111 ( 57) UUUGUAAAUA 1 sacCer3_chrIV_924868_924 ( 52) AUUGUAAAUA 1 sacCer3_chrIV_704944_705 ( 44) CUUGUAGAUA 1 sacCer3_chrIV_453710_453 ( 3) CGUGCAUAUA 1 sacCer3_chrIV_453676_453 ( 37) CGUGCAUAUA 1 sacCer3_chrIV_133443_133 ( 48) AAUGUAAAUA 1 sacCer3_chrII_729667_729 ( 49) UCUGUAUAUA 1 sacCer3_chrIV_258889_258 ( 45) UCUGCAAAUA 1 sacCer3_chrII_668411_668 ( 45) ACUGUAUAUA 1 sacCer3_chrII_134063_134 ( 43) CAUGCACAUA 1 sacCer3_chrII_664908_665 ( 24) ACUGCAAAUA 1 sacCer3_chrI_56912_57012 ( 7) CGUGUAAGUA 1 sacCer3_chrII_284345_284 ( 47) CUUGUAAGUA 1 sacCer3_chrII_395306_395 ( 81) UGUGUACAUA 1 sacCer3_chrIV_1068362_10 ( 46) UUUGUAUAUA 1 sacCer3_chrIII_23904_240 ( 45) UAUGUAUAUA 1 sacCer3_chrIII_52356_524 ( 74) AGUGUAUAUA 1 sacCer3_chrIV_503889_503 ( 37) CCUGUGAAUA 1 sacCer3_chrIV_45938_4603 ( 5) AUUGUAUAUA 1 sacCer3_chrIV_45894_4599 ( 49) AUUGUAUAUA 1 sacCer3_chrII_236995_237 ( 34) AAUGUAUAUA 1 sacCer3_chrI_79455_79555 ( 45) AUUGUAUAUA 1 sacCer3_chrII_536233_536 ( 57) ACUGCACAUA 1 sacCer3_chrIV_293292_293 ( 33) UGUGUAGAUA 1 sacCer3_chrII_394835_394 ( 15) UAUGUAGAUA 1 sacCer3_chrIV_192324_192 ( 38) UAUGCAUAUA 1 sacCer3_chrII_414085_414 ( 77) UAUGCACAUA 1 sacCer3_chrII_528764_528 ( 48) CCUGUAAAUU 1 sacCer3_chrII_110433_110 ( 26) AUUGUAAGUA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 18200 bayes= 9.88709 E= 3.7e-031 -79 177 -1264 -64 -28 80 -18 -22 -1264 -1264 -1264 145 -1264 -1264 282 -1264 -1264 -12 -1264 121 161 -1264 -318 -1264 76 -44 -159 -38 156 -1264 -159 -1264 -1264 -1264 -1264 145 161 -1264 -1264 -454 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 64 E= 3.7e-031 0.187500 0.578125 0.000000 0.234375 0.265625 0.296875 0.125000 0.312500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.156250 0.000000 0.843750 0.984375 0.000000 0.015625 0.000000 0.546875 0.125000 0.046875 0.281250 0.953125 0.000000 0.046875 0.000000 0.000000 0.000000 0.000000 1.000000 0.984375 0.000000 0.000000 0.015625 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [CU][UCA]UGUA[AU]AUA -------------------------------------------------------------------------------- Time 41.78 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 41 sites = 33 llr = 420 E-value = 2.0e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 112:12:2:::2:34121343244427:617:622:32522 pos.-specific C :2:1212422255221222311221112::::2222132:: probability G 32:1:1:::31:2111::::1:::2111:::::13:1::13 matrix U 6688868585723548765357542728493a262854485 bits 2.8 2.5 2.3 2.0 Relative 1.7 Entropy 1.4 * (18.3 bits) 1.1 * 0.8 * * * * * * * * 0.6 * *** ******* ** ***** * * 0.3 ************* ***** *** *********** **** 0.0 ----------------------------------------- Multilevel UUUUUUUUUUUCCUAUUUUAUUUAAUAUAUAUAUGUUUAUU consensus G C G AUAU CAUAAAUG U U C C ACU G sequence U CC CU U A A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------------------- sacCer3_chrIV_336193_336 21 3.78e-10 UACUUUUUUU UUUUUUUUUUUACUGUUAUCAUAAAUAUAUAUACCUUAUUG UUGUUUGCAA sacCer3_chrIV_309415_309 28 3.80e-09 UUUUCCUUCU UUUUUAUCUGUUCAAUUUCAUAAAUAAUAUAUAUGUACAAU GUAUAAACGG sacCer3_chrIV_309383_309 60 3.80e-09 UUUUCCUUCU UUUUUAUCUGUUCAAUUUCAUAAAUAAUAUAUAUGUACAAU sacCer3_chrIV_915979_916 30 4.95e-09 CUAUUAGACC UUUCUGUUUUUCCUUUUUAUUUUUCUAUAUAUAAUUUAUUG GGUAUAUAAU sacCer3_chrIII_162837_16 14 1.21e-08 GCGAGCCAUU UUAUUUCCUGUCCCCUUCAUCUUUGUUUAUAUCCAUUCUAG AACAUGAAUU sacCer3_chrI_73356_73456 3 2.51e-08 AU GGUUUUUCUUUUCAACUCAAAUAAAGAUUUAUAAGUUACUU AAAUAACAUA sacCer3_chrI_73321_73421 38 2.51e-08 AUAAAGACAU GGUUUUUCUUUUCAACUCAAAUAAAGAUUUAUAAGUUACUU AAAUAACAUA sacCer3_chrIV_130013_130 28 3.18e-08 AUUUGUUAGA UGUCUUUUCUUCGUAUUUCAAAAAAUUUAUAUAGGCGUAUG UUAAUAAGAU sacCer3_chrIII_52356_524 30 4.00e-08 ACCGUACUUA CCAUCUUCUCUCCUUUAUAUAUAUAUAUAUAUAUGUAUAUU UUCAGUGUAU sacCer3_chrII_479032_479 59 4.00e-08 AUAUACCUCU UAUUUUUAUGUAUUAGUUAAUUAAGUAUUUUUAUCUAUCUG C sacCer3_chrII_681031_681 40 1.20e-07 GUCUUUUACU AUAUUUUUUUUCCCAGUUUAUUUUGUGCUUAUUUUCUCAUU GAGGAGAAGG sacCer3_chrIV_929172_929 1 1.48e-07 . UUUUUUUUUUCAUUUUUUUUUUUUAUUCUUAUUUAUGUAUG AUACUUUAUU sacCer3_chrII_488771_488 9 2.45e-07 CUGGUCCG GUUUUCUCUGCCCUCUCUUCUAUUCACUUUUUUUAUACUUU AUAUAAAAUU sacCer3_chrII_453200_453 45 2.45e-07 AGCGAAGUAU UUUUUUUUCCUAGUUUUUAUGUAAAAAUAUAUUCAUUUUUU UCUCUACGCA sacCer3_chrI_139363_1394 23 2.45e-07 GUAUAAUGAG GAAUUUUCCGAACGUUUUUACUUUAUAUAUAUAUAUACAUG UAACAUAUAU sacCer3_chrII_88407_8850 7 3.30e-07 UACCAA UUUUUUCUUCUCUUCUCCUCAUCUCUUCAUAUAGUCUUAUA UAUCAUAUAU sacCer3_chrII_556313_556 60 4.00e-07 AUCAUAUCAU UUUUUUCUCUGUUUAUUUCUUCUAGAACUUAUACCUGUCUU sacCer3_chrII_680669_680 53 7.65e-07 UUGGUCGCUU GAUGUUUCUCUCGUCUUCCCGUUCGCUCUUUUAUUUUUUUA UUUUUUU sacCer3_chrIV_509454_509 24 1.09e-06 UUAGAAACGA GCUUUUUUAUGCCCAUCGUCAUCUAUAUAUAUAUUUGUAUC ACUUUAAUAG sacCer3_chrIV_911306_911 25 1.41e-06 CACAUGAAAU UCGUUUUUUGUCCUUUUUUUUCUCUUCUUUUUCUCUCCUGU UUCUUCUACC sacCer3_chrI_56912_57012 33 1.41e-06 UUAGUUUACU UUUGCUUCCCUCUGUGUAUAUUCUUUAUAUAUGUAUUUAUU AUUUUAAUUG sacCer3_chrIV_508734_508 14 1.54e-06 AACGAUAUCA GGUUGACAUUCCUUGUUUUCUUCAGCAUUAUUAUGUUCUUG UGGAUUAUUG sacCer3_chrII_110023_110 4 1.54e-06 AGC UUUUUUUCUGUCGCUACUUCAUUCACACAAAUCAUCUCAAU AUCCCUUGUA sacCer3_chrIV_439325_439 36 1.67e-06 AUACUUGUGA UGUGCCCAUUUACAUUUUUCUAUAAUAGAUUUACGUAUAUA AGUAAUGCUU sacCer3_chrII_38816_3891 22 1.82e-06 UAUCUUAGAA UUUUUUUAUUUUGAUUAUUAUAUAUUAUUAUUAUUCUUAUG GUAAAUAAUG sacCer3_chrIII_120853_12 44 1.98e-06 CCUCUGCAUA UUUUUCUUUCCUCAUGACCAUUUAGUAUUUAGCACUUAUUU AAUACAAUAA sacCer3_chrIII_163262_16 21 2.15e-06 GCAAUUUAUU GUUUCUCUUGUAAUCUUAACUUCCCUUUUUUUCUCUUAUUG CGUCUUAUCU sacCer3_chrIV_490901_491 29 3.20e-06 AUAUAUGUUG UUUCUGUUCUGCCAAUCUUUUUUAAUAUAUUUCUCAUGAUA GCUCCAUAAU sacCer3_chrIII_261063_26 17 3.20e-06 AAACCUGAAC ACUUCGUCUUCCCCAUCAUCCGACUUGUAUAUCCGUUCAGU GUGUUUUUCU sacCer3_chrII_370786_370 51 5.89e-06 UAUCUUUUAU AUAUUAUCUGGCCUAAAUUUUUACAUAUAAAUAUUUAUCAU AUUAUGACA sacCer3_chrII_591631_591 36 7.32e-06 UCUUGGACCU GCAUAAUUUUUAUACUUUUUCCUUUUAGAUAUAUGUACUUU UGGCUUAAUU sacCer3_chrIII_139045_13 37 9.71e-06 UAUUUUAUUU UUUGAAUAUUUUUUAUUUAUAUACGUAUAUAUAGACUAUUA UUUAUCUUUU sacCer3_chrII_333867_333 42 1.19e-05 UAUUAGGCUC UUUUUCUUUUUCUUUUACCAGACUUGGUUUUUUUCUCUCUU UAGUAAUUGU -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- sacCer3_chrIV_336193_336 3.8e-10 20_[2]_39 sacCer3_chrIV_309415_309 3.8e-09 27_[2]_32 sacCer3_chrIV_309383_309 3.8e-09 59_[2] sacCer3_chrIV_915979_916 5e-09 29_[2]_30 sacCer3_chrIII_162837_16 1.2e-08 13_[2]_46 sacCer3_chrI_73356_73456 2.5e-08 2_[2]_57 sacCer3_chrI_73321_73421 2.5e-08 37_[2]_22 sacCer3_chrIV_130013_130 3.2e-08 27_[2]_32 sacCer3_chrIII_52356_524 4e-08 29_[2]_30 sacCer3_chrII_479032_479 4e-08 58_[2]_1 sacCer3_chrII_681031_681 1.2e-07 39_[2]_20 sacCer3_chrIV_929172_929 1.5e-07 [2]_59 sacCer3_chrII_488771_488 2.5e-07 8_[2]_51 sacCer3_chrII_453200_453 2.5e-07 44_[2]_15 sacCer3_chrI_139363_1394 2.5e-07 22_[2]_37 sacCer3_chrII_88407_8850 3.3e-07 6_[2]_53 sacCer3_chrII_556313_556 4e-07 59_[2] sacCer3_chrII_680669_680 7.7e-07 52_[2]_7 sacCer3_chrIV_509454_509 1.1e-06 23_[2]_36 sacCer3_chrIV_911306_911 1.4e-06 24_[2]_35 sacCer3_chrI_56912_57012 1.4e-06 32_[2]_27 sacCer3_chrIV_508734_508 1.5e-06 13_[2]_46 sacCer3_chrII_110023_110 1.5e-06 3_[2]_56 sacCer3_chrIV_439325_439 1.7e-06 35_[2]_24 sacCer3_chrII_38816_3891 1.8e-06 21_[2]_38 sacCer3_chrIII_120853_12 2e-06 43_[2]_16 sacCer3_chrIII_163262_16 2.1e-06 20_[2]_39 sacCer3_chrIV_490901_491 3.2e-06 28_[2]_31 sacCer3_chrIII_261063_26 3.2e-06 16_[2]_43 sacCer3_chrII_370786_370 5.9e-06 50_[2]_9 sacCer3_chrII_591631_591 7.3e-06 35_[2]_24 sacCer3_chrIII_139045_13 9.7e-06 36_[2]_23 sacCer3_chrII_333867_333 1.2e-05 41_[2]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=41 seqs=33 sacCer3_chrIV_336193_336 ( 21) UUUUUUUUUUUACUGUUAUCAUAAAUAUAUAUACCUUAUUG 1 sacCer3_chrIV_309415_309 ( 28) UUUUUAUCUGUUCAAUUUCAUAAAUAAUAUAUAUGUACAAU 1 sacCer3_chrIV_309383_309 ( 60) UUUUUAUCUGUUCAAUUUCAUAAAUAAUAUAUAUGUACAAU 1 sacCer3_chrIV_915979_916 ( 30) UUUCUGUUUUUCCUUUUUAUUUUUCUAUAUAUAAUUUAUUG 1 sacCer3_chrIII_162837_16 ( 14) UUAUUUCCUGUCCCCUUCAUCUUUGUUUAUAUCCAUUCUAG 1 sacCer3_chrI_73356_73456 ( 3) GGUUUUUCUUUUCAACUCAAAUAAAGAUUUAUAAGUUACUU 1 sacCer3_chrI_73321_73421 ( 38) GGUUUUUCUUUUCAACUCAAAUAAAGAUUUAUAAGUUACUU 1 sacCer3_chrIV_130013_130 ( 28) UGUCUUUUCUUCGUAUUUCAAAAAAUUUAUAUAGGCGUAUG 1 sacCer3_chrIII_52356_524 ( 30) CCAUCUUCUCUCCUUUAUAUAUAUAUAUAUAUAUGUAUAUU 1 sacCer3_chrII_479032_479 ( 59) UAUUUUUAUGUAUUAGUUAAUUAAGUAUUUUUAUCUAUCUG 1 sacCer3_chrII_681031_681 ( 40) AUAUUUUUUUUCCCAGUUUAUUUUGUGCUUAUUUUCUCAUU 1 sacCer3_chrIV_929172_929 ( 1) UUUUUUUUUUCAUUUUUUUUUUUUAUUCUUAUUUAUGUAUG 1 sacCer3_chrII_488771_488 ( 9) GUUUUCUCUGCCCUCUCUUCUAUUCACUUUUUUUAUACUUU 1 sacCer3_chrII_453200_453 ( 45) UUUUUUUUCCUAGUUUUUAUGUAAAAAUAUAUUCAUUUUUU 1 sacCer3_chrI_139363_1394 ( 23) GAAUUUUCCGAACGUUUUUACUUUAUAUAUAUAUAUACAUG 1 sacCer3_chrII_88407_8850 ( 7) UUUUUUCUUCUCUUCUCCUCAUCUCUUCAUAUAGUCUUAUA 1 sacCer3_chrII_556313_556 ( 60) UUUUUUCUCUGUUUAUUUCUUCUAGAACUUAUACCUGUCUU 1 sacCer3_chrII_680669_680 ( 53) GAUGUUUCUCUCGUCUUCCCGUUCGCUCUUUUAUUUUUUUA 1 sacCer3_chrIV_509454_509 ( 24) GCUUUUUUAUGCCCAUCGUCAUCUAUAUAUAUAUUUGUAUC 1 sacCer3_chrIV_911306_911 ( 25) UCGUUUUUUGUCCUUUUUUUUCUCUUCUUUUUCUCUCCUGU 1 sacCer3_chrI_56912_57012 ( 33) UUUGCUUCCCUCUGUGUAUAUUCUUUAUAUAUGUAUUUAUU 1 sacCer3_chrIV_508734_508 ( 14) GGUUGACAUUCCUUGUUUUCUUCAGCAUUAUUAUGUUCUUG 1 sacCer3_chrII_110023_110 ( 4) UUUUUUUCUGUCGCUACUUCAUUCACACAAAUCAUCUCAAU 1 sacCer3_chrIV_439325_439 ( 36) UGUGCCCAUUUACAUUUUUCUAUAAUAGAUUUACGUAUAUA 1 sacCer3_chrII_38816_3891 ( 22) UUUUUUUAUUUUGAUUAUUAUAUAUUAUUAUUAUUCUUAUG 1 sacCer3_chrIII_120853_12 ( 44) UUUUUCUUUCCUCAUGACCAUUUAGUAUUUAGCACUUAUUU 1 sacCer3_chrIII_163262_16 ( 21) GUUUCUCUUGUAAUCUUAACUUCCCUUUUUUUCUCUUAUUG 1 sacCer3_chrIV_490901_491 ( 29) UUUCUGUUCUGCCAAUCUUUUUUAAUAUAUUUCUCAUGAUA 1 sacCer3_chrIII_261063_26 ( 17) ACUUCGUCUUCCCCAUCAUCCGACUUGUAUAUCCGUUCAGU 1 sacCer3_chrII_370786_370 ( 51) AUAUUAUCUGGCCUAAAUUUUUACAUAUAAAUAUUUAUCAU 1 sacCer3_chrII_591631_591 ( 36) GCAUAAUUUUUAUACUUUUUCCUUUUAGAUAUAUGUACUUU 1 sacCer3_chrIII_139045_13 ( 37) UUUGAAUAUUUUUUAUUUAUAUACGUAUAUAUAGACUAUUA 1 sacCer3_chrII_333867_333 ( 42) UUUUUCUUUUUCUUUUACCAGACUUGGUUUUUUUCUCUCUU 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 41 n= 12000 bayes= 9.27043 E= 2.0e-004 -183 -249 95 73 -183 -17 10 73 -83 -1169 -222 111 -1169 -90 -22 111 -241 -17 -222 105 -83 -49 -64 73 -1169 10 -1169 116 -109 121 -1169 32 -341 10 -1169 111 -1169 10 110 50 -341 -17 -22 93 -42 160 -1169 -59 -341 168 10 -42 -25 -17 -122 50 28 10 -122 -1 -241 -149 -22 105 -109 10 -1169 87 -141 32 -222 80 -25 32 -1169 50 17 83 -1169 -13 -25 -49 -64 50 -61 -90 -222 87 17 10 -1169 32 39 32 -1169 -1 28 -49 78 -59 -109 -90 -64 87 104 -149 -64 -101 -1169 10 -122 105 83 -1169 -1169 22 -141 -1169 -1169 127 111 -1169 -1169 -27 -1169 -1169 -222 141 91 32 -222 -127 -109 10 -64 66 -61 51 110 -59 -341 10 -1169 111 -25 -149 -22 58 -61 97 -222 22 49 10 -1169 -1 -109 -1169 -122 111 -109 -249 110 50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 41 nsites= 33 E= 2.0e-004 0.090909 0.030303 0.272727 0.606061 0.090909 0.151515 0.151515 0.606061 0.181818 0.000000 0.030303 0.787879 0.000000 0.090909 0.121212 0.787879 0.060606 0.151515 0.030303 0.757576 0.181818 0.121212 0.090909 0.606061 0.000000 0.181818 0.000000 0.818182 0.151515 0.393939 0.000000 0.454545 0.030303 0.181818 0.000000 0.787879 0.000000 0.181818 0.303030 0.515152 0.030303 0.151515 0.121212 0.696970 0.242424 0.515152 0.000000 0.242424 0.030303 0.545455 0.151515 0.272727 0.272727 0.151515 0.060606 0.515152 0.393939 0.181818 0.060606 0.363636 0.060606 0.060606 0.121212 0.757576 0.151515 0.181818 0.000000 0.666667 0.121212 0.212121 0.030303 0.636364 0.272727 0.212121 0.000000 0.515152 0.363636 0.303030 0.000000 0.333333 0.272727 0.121212 0.090909 0.515152 0.212121 0.090909 0.030303 0.666667 0.363636 0.181818 0.000000 0.454545 0.424242 0.212121 0.000000 0.363636 0.393939 0.121212 0.242424 0.242424 0.151515 0.090909 0.090909 0.666667 0.666667 0.060606 0.090909 0.181818 0.000000 0.181818 0.060606 0.757576 0.575758 0.000000 0.000000 0.424242 0.121212 0.000000 0.000000 0.878788 0.696970 0.000000 0.000000 0.303030 0.000000 0.000000 0.030303 0.969697 0.606061 0.212121 0.030303 0.151515 0.151515 0.181818 0.090909 0.575758 0.212121 0.242424 0.303030 0.242424 0.030303 0.181818 0.000000 0.787879 0.272727 0.060606 0.121212 0.545455 0.212121 0.333333 0.030303 0.424242 0.454545 0.181818 0.000000 0.363636 0.151515 0.000000 0.060606 0.787879 0.151515 0.030303 0.303030 0.515152 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [UG]UUUUUU[UC]U[UG]U[CAU][CU][UA][AU]UU[UC][UAC][AUC][UA][UA][UA][AUC][AGU]UAU[AU]U[AU]U[AC]U[GCUA]U[UA][UCA][AU]U[UG] -------------------------------------------------------------------------------- Time 73.85 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 41 sites = 5 llr = 173 E-value = 3.1e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :4::824aaa8:6:4::22::aa26a4868aa86a:2:::4 pos.-specific C :2:::4::::2::::6:4:::::::::::2::2::4:4::6 probability G :4:6:44::::4::646:::2::::::::::::::686::: matrix U a:a42:2::::64a::448a8::84:624::::4::::aa: bits 2.8 2.5 2.3 2.0 * Relative 1.7 *** * ** * ** **** Entropy 1.4 * ** *** **** * ** * ** ****** (49.8 bits) 1.1 * ** ***** **** **** * **** ******* 0.8 ****** ***** **** ****** * * **** ******* 0.6 ***************** *********************** 0.3 ***************************************** 0.0 ----------------------------------------- Multilevel UAUGACAAAAAUAUGCGCUUUAAUAAUAAAAAAAAGGGUUC consensus G UUGG CGU AGUUA G AU AUUC CU CAC A sequence C AU A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------------------- sacCer3_chrIV_453710_453 26 3.32e-18 UUUUAUCUAC UGUGAGGAAAAGUUGCUCUUUAAUUAUAUAAAAAACGCUUA UGUAGCAUUG sacCer3_chrIV_453676_453 60 3.32e-18 UUUUAUCUAC UGUGAGGAAAAGUUGCUCUUUAAUUAUAUAAAAAACGCUUA sacCer3_chrII_256827_256 25 3.19e-17 AGUUAUUUUU UAUUACAAAAAUAUAGGUUUUAAUAAAAAAAAAUAGGGUUC UAUUUGUUUU sacCer3_chrII_256804_256 48 3.19e-17 AGUUAUUUUU UAUUACAAAAAUAUAGGUUUUAAUAAAAAAAAAUAGGGUUC UAUUUGUUUU sacCer3_chrI_90825_90925 46 4.93e-14 UUCGAACAAU UCUGUAUAAACUAUGCGAAUGAAAAAUUACAACAAGAGUUC AACCAGCACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- sacCer3_chrIV_453710_453 3.3e-18 25_[3]_34 sacCer3_chrIV_453676_453 3.3e-18 59_[3] sacCer3_chrII_256827_256 3.2e-17 24_[3]_35 sacCer3_chrII_256804_256 3.2e-17 47_[3]_12 sacCer3_chrI_90825_90925 4.9e-14 45_[3]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=41 seqs=5 sacCer3_chrIV_453710_453 ( 26) UGUGAGGAAAAGUUGCUCUUUAAUUAUAUAAAAAACGCUUA 1 sacCer3_chrIV_453676_453 ( 60) UGUGAGGAAAAGUUGCUCUUUAAUUAUAUAAAAAACGCUUA 1 sacCer3_chrII_256827_256 ( 25) UAUUACAAAAAUAUAGGUUUUAAUAAAAAAAAAUAGGGUUC 1 sacCer3_chrII_256804_256 ( 48) UAUUACAAAAAUAUAGGUUUUAAUAAAAAAAAAUAGGGUUC 1 sacCer3_chrI_90825_90925 ( 46) UCUGUAUAAACUAUGCGAAUGAAAAAUUACAACAAGAGUUC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 41 n= 12000 bayes= 11.4799 E= 3.1e-003 -897 -897 -897 145 31 23 150 -897 -897 -897 -897 145 -897 -897 208 13 131 -897 -897 -87 -69 123 150 -897 31 -897 150 -87 163 -897 -897 -897 163 -897 -897 -897 163 -897 -897 -897 131 23 -897 -897 -897 -897 150 72 89 -897 -897 13 -897 -897 -897 145 31 -897 208 -897 -897 182 150 -897 -897 -897 208 13 -69 123 -897 13 -69 -897 -897 113 -897 -897 -897 145 -897 -897 50 113 163 -897 -897 -897 163 -897 -897 -897 -69 -897 -897 113 89 -897 -897 13 163 -897 -897 -897 31 -897 -897 72 131 -897 -897 -87 89 -897 -897 13 131 23 -897 -897 163 -897 -897 -897 163 -897 -897 -897 131 23 -897 -897 89 -897 -897 13 163 -897 -897 -897 -897 123 208 -897 -69 -897 250 -897 -897 123 208 -897 -897 -897 -897 145 -897 -897 -897 145 31 182 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 41 nsites= 5 E= 3.1e-003 0.000000 0.000000 0.000000 1.000000 0.400000 0.200000 0.400000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.400000 0.800000 0.000000 0.000000 0.200000 0.200000 0.400000 0.400000 0.000000 0.400000 0.000000 0.400000 0.200000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.000000 0.000000 0.400000 0.600000 0.600000 0.000000 0.000000 0.400000 0.000000 0.000000 0.000000 1.000000 0.400000 0.000000 0.600000 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 0.000000 0.600000 0.400000 0.200000 0.400000 0.000000 0.400000 0.200000 0.000000 0.000000 0.800000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.800000 0.600000 0.000000 0.000000 0.400000 1.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.000000 0.600000 0.800000 0.000000 0.000000 0.200000 0.600000 0.000000 0.000000 0.400000 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.600000 0.000000 0.000000 0.400000 1.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.400000 0.600000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- U[AGC]U[GU][AU][CGA][AGU]AAA[AC][UG][AU]U[GA][CG][GU][CUA][UA]U[UG]AA[UA][AU]A[UA][AU][AU][AC]AA[AC][AU]A[GC][GA][GC]UU[CA] -------------------------------------------------------------------------------- Time 103.17 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- sacCer3_chrI_48232_48332 3.92e-01 100 sacCer3_chrI_71777_71877 9.96e-01 100 sacCer3_chrI_72016_72116 1.00e+00 100 sacCer3_chrI_73291_73391 1.55e-02 100 sacCer3_chrI_73321_73421 2.93e-06 37_[2(2.51e-08)]_22 sacCer3_chrI_73356_73456 5.36e-06 2_[2(2.51e-08)]_57 sacCer3_chrI_79455_79555 5.99e-02 100 sacCer3_chrI_93336_93436 9.68e-01 100 sacCer3_chrI_120749_1208 8.23e-01 100 sacCer3_chrI_142343_1424 3.67e-01 100 sacCer3_chrI_142963_1430 9.41e-01 100 sacCer3_chrI_143283_1433 3.88e-01 100 sacCer3_chrI_56912_57012 4.60e-05 32_[2(1.41e-06)]_27 sacCer3_chrI_74949_75049 6.35e-02 100 sacCer3_chrI_90825_90925 1.76e-10 45_[3(4.93e-14)]_14 sacCer3_chrI_106130_1062 9.40e-01 100 sacCer3_chrI_139363_1394 1.56e-04 22_[2(2.45e-07)]_37 sacCer3_chrI_139577_1396 9.96e-01 100 sacCer3_chrI_141262_1413 8.83e-01 100 sacCer3_chrI_150820_1509 9.99e-01 100 sacCer3_chrII_38816_3891 1.73e-04 21_[2(1.82e-06)]_38 sacCer3_chrII_93391_9349 6.92e-01 100 sacCer3_chrII_111177_111 1.13e-01 56_[1(7.93e-05)]_34 sacCer3_chrII_146864_146 6.24e-02 44_[1(4.05e-05)]_46 sacCer3_chrII_169390_169 3.16e-01 100 sacCer3_chrII_174563_174 9.94e-02 100 sacCer3_chrII_236818_236 6.21e-01 100 sacCer3_chrII_236884_236 4.19e-01 100 sacCer3_chrII_236995_237 6.71e-03 100 sacCer3_chrII_244253_244 1.62e-02 55_[1(7.93e-05)]_35 sacCer3_chrII_256804_256 3.71e-13 47_[3(3.19e-17)]_12 sacCer3_chrII_256827_256 3.62e-13 24_[3(3.19e-17)]_35 sacCer3_chrII_260488_260 7.33e-01 100 sacCer3_chrII_284345_284 1.28e-01 100 sacCer3_chrII_316594_316 4.86e-01 100 sacCer3_chrII_333867_333 8.52e-03 41_[2(1.19e-05)]_18 sacCer3_chrII_349356_349 4.03e-01 100 sacCer3_chrII_394835_394 4.19e-02 100 sacCer3_chrII_409627_409 1.97e-01 100 sacCer3_chrII_436701_436 9.04e-01 100 sacCer3_chrII_452695_452 3.72e-01 100 sacCer3_chrII_452727_452 3.53e-01 100 sacCer3_chrII_453200_453 1.32e-04 44_[2(2.45e-07)]_15 sacCer3_chrII_479032_479 5.74e-05 58_[2(4.00e-08)]_1 sacCer3_chrII_516288_516 6.90e-01 100 sacCer3_chrII_517185_517 4.90e-01 100 sacCer3_chrII_528764_528 2.57e-01 100 sacCer3_chrII_536187_536 4.48e-03 45_[1(2.17e-06)]_45 sacCer3_chrII_536233_536 7.46e-02 100 sacCer3_chrII_556313_556 1.56e-06 5_[3(2.69e-05)]_13_[2(4.00e-07)] sacCer3_chrII_556418_556 7.51e-01 100 sacCer3_chrII_556467_556 3.08e-02 100 sacCer3_chrII_557902_558 5.73e-01 100 sacCer3_chrII_559558_559 7.27e-01 100 sacCer3_chrII_596022_596 1.92e-02 46_[1(7.93e-05)]_44 sacCer3_chrII_605497_605 2.15e-01 100 sacCer3_chrII_608754_608 9.45e-01 100 sacCer3_chrII_608929_609 4.71e-03 81_[1(1.28e-05)]_9 sacCer3_chrII_608966_609 5.08e-03 44_[1(1.28e-05)]_46 sacCer3_chrII_623426_623 9.29e-01 100 sacCer3_chrII_634861_634 4.89e-01 100 sacCer3_chrII_722332_722 2.70e-03 48_[1(2.17e-06)]_42 sacCer3_chrII_731484_731 5.67e-01 100 sacCer3_chrII_741602_741 2.22e-02 44_[1(1.28e-05)]_46 sacCer3_chrII_768644_768 3.10e-03 62_[1(3.99e-06)]_28 sacCer3_chrII_768698_768 4.99e-03 8_[1(3.99e-06)]_82 sacCer3_chrII_781978_782 8.83e-01 100 sacCer3_chrII_10213_1031 4.37e-01 100 sacCer3_chrII_88407_8850 4.58e-04 6_[2(3.30e-07)]_53 sacCer3_chrII_109955_110 2.23e-01 100 sacCer3_chrII_110023_110 1.13e-05 3_[2(1.54e-06)]_4_[1(1.28e-05)]_42 sacCer3_chrII_110433_110 1.36e-01 100 sacCer3_chrII_134063_134 1.08e-01 100 sacCer3_chrII_164029_164 7.79e-01 100 sacCer3_chrII_177781_177 2.77e-02 45_[1(4.05e-05)]_45 sacCer3_chrII_186759_186 6.78e-01 100 sacCer3_chrII_187866_187 6.79e-01 100 sacCer3_chrII_272689_272 1.87e-01 100 sacCer3_chrII_296238_296 2.73e-02 100 sacCer3_chrII_338654_338 6.56e-01 100 sacCer3_chrII_370786_370 2.61e-03 50_[2(5.89e-06)]_9 sacCer3_chrII_372002_372 3.64e-01 100 sacCer3_chrII_376509_376 1.00e+00 100 sacCer3_chrII_395306_395 1.49e-01 100 sacCer3_chrII_406476_406 4.77e-02 100 sacCer3_chrII_414085_414 9.30e-02 100 sacCer3_chrII_418571_418 9.06e-02 100 sacCer3_chrII_419076_419 9.52e-01 100 sacCer3_chrII_488771_488 2.02e-04 8_[2(2.45e-07)]_51 sacCer3_chrII_492162_492 6.07e-01 100 sacCer3_chrII_502316_502 9.15e-01 100 sacCer3_chrII_531780_531 9.98e-01 100 sacCer3_chrII_564432_564 8.03e-01 100 sacCer3_chrII_586486_586 1.09e-02 45_[1(1.28e-05)]_45 sacCer3_chrII_591631_591 1.12e-03 35_[2(7.32e-06)]_24 sacCer3_chrII_598991_599 9.91e-03 5_[1(4.05e-05)]_85 sacCer3_chrII_612086_612 1.78e-02 100 sacCer3_chrII_613283_613 9.95e-01 100 sacCer3_chrII_617922_618 1.55e-01 100 sacCer3_chrII_664908_665 5.71e-02 100 sacCer3_chrII_668411_668 2.93e-02 100 sacCer3_chrII_680669_680 2.24e-03 52_[2(7.65e-07)]_7 sacCer3_chrII_681031_681 3.61e-04 39_[2(1.20e-07)]_20 sacCer3_chrII_681797_681 9.43e-01 100 sacCer3_chrII_729667_729 1.14e-02 100 sacCer3_chrII_735628_735 2.31e-02 45_[1(4.05e-05)]_45 sacCer3_chrII_735654_735 1.35e-02 71_[1(4.05e-05)]_19 sacCer3_chrII_743545_743 1.97e-01 100 sacCer3_chrII_770259_770 6.36e-01 100 sacCer3_chrII_784956_785 2.36e-05 26_[1(1.28e-05)]_64 sacCer3_chrIII_35863_359 8.88e-03 46_[1(2.17e-06)]_44 sacCer3_chrIII_52356_524 5.73e-06 29_[2(4.00e-08)]_30 sacCer3_chrIII_60704_608 1.87e-04 42_[1(2.17e-06)]_48 sacCer3_chrIII_60735_608 1.87e-04 11_[1(2.17e-06)]_79 sacCer3_chrIII_119154_11 1.27e-02 60_[1(1.64e-05)]_30 sacCer3_chrIII_139045_13 2.83e-03 36_[2(9.71e-06)]_23 sacCer3_chrIII_240011_24 3.88e-01 100 sacCer3_chrIII_23904_240 9.86e-03 100 sacCer3_chrIII_120853_12 4.78e-04 43_[2(1.98e-06)]_16 sacCer3_chrIII_141395_14 6.67e-01 100 sacCer3_chrIII_158886_15 4.82e-02 43_[1(4.05e-05)]_47 sacCer3_chrIII_159033_15 9.43e-01 100 sacCer3_chrIII_162837_16 2.71e-05 13_[2(1.21e-08)]_46 sacCer3_chrIII_163262_16 5.60e-03 20_[2(2.15e-06)]_39 sacCer3_chrIII_172827_17 1.15e-01 100 sacCer3_chrIII_194342_19 2.53e-01 100 sacCer3_chrIII_209832_20 4.61e-03 49_[1(1.64e-05)]_41 sacCer3_chrIII_250281_25 8.93e-01 100 sacCer3_chrIII_261063_26 1.83e-03 16_[2(3.20e-06)]_43 sacCer3_chrIV_38771_3887 1.43e-02 100 sacCer3_chrIV_45894_4599 2.75e-02 100 sacCer3_chrIV_45938_4603 2.83e-02 100 sacCer3_chrIV_90803_9090 6.73e-04 1_[3(3.25e-05)]_58 sacCer3_chrIV_99241_9934 4.20e-02 34_[1(4.05e-05)]_56 sacCer3_chrIV_109508_109 9.63e-01 100 sacCer3_chrIV_111058_111 3.49e-02 100 sacCer3_chrIV_118555_118 2.82e-01 100 sacCer3_chrIV_130013_130 2.38e-06 27_[2(3.18e-08)]_32 sacCer3_chrIV_133443_133 1.28e-01 100 sacCer3_chrIV_184968_185 9.66e-01 100 sacCer3_chrIV_192324_192 9.75e-02 100 sacCer3_chrIV_233877_233 1.43e-01 100 sacCer3_chrIV_246005_246 3.74e-02 43_[1(4.96e-05)]_47 sacCer3_chrIV_258889_258 2.19e-02 100 sacCer3_chrIV_270000_270 2.48e-02 37_[1(1.28e-05)]_53 sacCer3_chrIV_293292_293 9.72e-03 100 sacCer3_chrIV_309383_309 4.82e-06 59_[2(3.80e-09)] sacCer3_chrIV_309415_309 2.73e-06 27_[2(3.80e-09)]_32 sacCer3_chrIV_322970_323 2.59e-01 100 sacCer3_chrIV_336193_336 1.47e-06 20_[2(3.78e-10)]_39 sacCer3_chrIV_371860_371 7.19e-01 100 sacCer3_chrIV_372547_372 1.42e-02 41_[1(4.05e-05)]_49 sacCer3_chrIV_412985_413 5.20e-01 100 sacCer3_chrIV_413013_413 6.54e-01 100 sacCer3_chrIV_428446_428 1.84e-01 100 sacCer3_chrIV_428482_428 1.89e-01 100 sacCer3_chrIV_439325_439 6.45e-04 35_[2(1.67e-06)]_24 sacCer3_chrIV_449243_449 3.89e-02 43_[1(4.96e-05)]_47 sacCer3_chrIV_453676_453 5.77e-16 59_[3(3.32e-18)] sacCer3_chrIV_453710_453 2.89e-16 25_[3(3.32e-18)]_34 sacCer3_chrIV_472669_472 9.58e-01 100 sacCer3_chrIV_490901_491 1.54e-03 28_[2(3.20e-06)]_31 sacCer3_chrIV_503889_503 3.39e-02 100 sacCer3_chrIV_508734_508 7.05e-04 13_[2(1.54e-06)]_46 sacCer3_chrIV_509148_509 6.54e-01 100 sacCer3_chrIV_509285_509 6.01e-01 100 sacCer3_chrIV_509454_509 8.74e-04 23_[2(1.09e-06)]_36 sacCer3_chrIV_540425_540 1.50e-02 45_[1(1.28e-05)]_45 sacCer3_chrIV_540508_540 6.46e-02 100 sacCer3_chrIV_552956_553 1.43e-02 38_[1(7.93e-05)]_52 sacCer3_chrIV_564798_564 4.84e-01 100 sacCer3_chrIV_576910_577 7.62e-01 100 sacCer3_chrIV_580425_580 1.35e-01 100 sacCer3_chrIV_592860_592 9.99e-01 100 sacCer3_chrIV_600891_600 9.93e-01 100 sacCer3_chrIV_602048_602 4.60e-02 100 sacCer3_chrIV_603412_603 1.95e-03 56_[1(4.05e-05)]_34 sacCer3_chrIV_632011_632 1.07e-01 100 sacCer3_chrIV_632874_632 2.66e-03 36_[1(2.17e-06)]_54 sacCer3_chrIV_682181_682 9.56e-01 100 sacCer3_chrIV_695255_695 5.84e-01 100 sacCer3_chrIV_704944_705 5.03e-02 100 sacCer3_chrIV_705300_705 9.60e-01 100 sacCer3_chrIV_762742_762 5.88e-01 100 sacCer3_chrIV_773623_773 9.99e-01 100 sacCer3_chrIV_840392_840 7.02e-02 100 sacCer3_chrIV_893923_894 2.68e-01 100 sacCer3_chrIV_911306_911 4.43e-03 24_[2(1.41e-06)]_35 sacCer3_chrIV_915932_916 6.09e-01 100 sacCer3_chrIV_915979_916 1.40e-06 29_[2(4.95e-09)]_30 sacCer3_chrIV_917163_917 3.17e-02 100 sacCer3_chrIV_924868_924 2.81e-02 100 sacCer3_chrIV_927369_927 4.92e-02 100 sacCer3_chrIV_929172_929 8.84e-05 [2(1.48e-07)]_59 sacCer3_chrIV_937531_937 2.80e-02 41_[1(1.28e-05)]_49 sacCer3_chrIV_961374_961 7.37e-01 100 sacCer3_chrIV_1055284_10 4.02e-01 100 sacCer3_chrIV_1068362_10 1.03e-02 100 sacCer3_chrIV_1093820_10 5.59e-01 100 sacCer3_chrIV_1111675_11 6.62e-03 43_[1(1.64e-05)]_47 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: IMB12-010665 ********************************************************************************