SPAMO: Find co-factor motifs by looking for motifs which appear at significant spacings to a primary motif Options: -uploaded file containing uploaded secondary motif database -margin margin parameter passed to spamo -dumpseqs dump the sequence matches to a file for each significant primary/secondary -help brief help message ]]> dumpseqs -dumpseqs Dump sequence matches uploaded_secondary_motifs -uploaded FILE INPUT false Alternate Secondary Motifs margin -margin INT false Margin sequences FILE INPUT true Sequences primary_motif FILE INPUT true Primary Motif secondary_motif_patterns STRING true Secondary Motif DB Names required_params sequences primary_motif secondary_motif_patterns Required Parameters optional_params uploaded_secondary_motifs margin dumpseqs Optional Parameters @SERVICE_DIR@/spamo_webservice @drmaa_queue@ false