MAST: Search for groups of motifs in sequence databases [] Options: -dna search nucleotide database with protein motifs -seqp Scale motif display threshold by sequence length -comp Use individual sequence composition in E-value and p-value calculation -sep treat the rc strand as a separate sequence; not compatible with -norc -norc don't process the rc strand; not compatible with -sep -ev display sequences with evalue below this threshold -mev Ignore motifs with evalue above this threshold -nseqs Reduce memory usage by allowing early calculation of E-values -upload_db uploaded sequence database -df Name to show for sequence database; underscores are converted to spaces -help brief help message ]]> dna -dna false Translate to protein (for scanning DNA sequences with protein motifs) seqp -seqp false Scale motif display threshold by sequence length comp -comp false Calculate per-sequence background frequencies sep -sep false Scan the reverse complement strand as if it was a separate sequence norc -norc false Do not scan the reverse complement strand ev -ev FLOAT 10 Sequence E-value threshold mev -mev FLOAT Filter by E-value upload_db -upload_db FILE INPUT Upload Sequence Database df -df STRING Display Name motifs FILE INPUT true Motifs seq_db_name STRING false Filename of Sequence Database motifs_in motifs mev Motifs sequences_in seq_db_name upload_db df dna comp Sequences strand_options sep norc true Sequence Strand Options (exclusive) scan_options ev seqp Output Options @SERVICE_DIR@/mast_webservice @drmaa_queue@ false