<dreme version="5.4.0" release="Tue Mar 9 17:38:20 2021 -0800">
  <model>
    <command_line>dreme -oc dreme_example_output_files -png -p Klf1.fna</command_line>
    <positives name="Klf1" count="904" file="Klf1.fna" last_mod_date="Sun Feb 28 16:39:39 PST 2021" />
    <negatives name="shuffled positive sequences" count="904" from="shuffled"/>
    <alphabet name="DNA" like="dna">
      <letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
      <letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
      <letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
      <letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
      <letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
      <letter id="V" symbol="V" equals="ACG" name="Not T"/>
      <letter id="H" symbol="H" equals="ACT" name="Not G"/>
      <letter id="D" symbol="D" equals="AGT" name="Not C"/>
      <letter id="B" symbol="B" equals="CGT" name="Not A"/>
      <letter id="M" symbol="M" equals="AC" name="Amino"/>
      <letter id="R" symbol="R" equals="AG" name="Purine"/>
      <letter id="W" symbol="W" equals="AT" name="Weak"/>
      <letter id="S" symbol="S" equals="CG" name="Strong"/>
      <letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
      <letter id="K" symbol="K" equals="GT" name="Keto"/>
    </alphabet>
    <strands>both</strands>
    <background A="0.255" C="0.245" G="0.243" T="0.257" from="dataset"/>
    <stop evalue="0.05"/>
    <ngen>100</ngen>
    <add_pv_thresh>0.01</add_pv_thresh>
    <seed>1</seed>
    <host>Timothys-Mac-Mini.local</host>
    <when>Sat May 22 13:31:44 PDT 2021</when>
  </model>
  <motifs>
    <motif id="m01" alt="DREME-1" seq="CCMCRCCC" length="8" nsites="454" p="350" n="49" pvalue="1.8e-071" evalue="7.6e-067" unerased_evalue="7.6e-067">
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="0.550661" C="0.449339" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="0.733480" C="0.000000" G="0.266520" T="0.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <match seq="CCACACCC" p="175" n="19" pvalue="2.4e-036" evalue="1.0e-031"/>
      <match seq="CCCCACCC" p="128" n="25" pvalue="1.5e-019" evalue="6.4e-015"/>
      <match seq="CCACGCCC" p="55" n="3" pvalue="5.3e-014" evalue="2.3e-009"/>
      <match seq="CCCCGCCC" p="53" n="3" pvalue="2.0e-013" evalue="8.6e-009"/>
    </motif>
    <motif id="m02" alt="DREME-2" seq="BTTATCW" length="7" nsites="613" p="449" n="190" pvalue="5.6e-038" evalue="2.4e-033" unerased_evalue="1.3e-033">
      <pos A="0.000000" C="0.484502" G="0.216966" T="0.298532"/>
      <pos A="0.000000" C="0.000000" G="0.000000" T="1.000000"/>
      <pos A="0.000000" C="0.000000" G="0.000000" T="1.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="0.000000" T="1.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="0.415987" C="0.000000" G="0.000000" T="0.584013"/>
      <match seq="CTTATCT" p="169" n="56" pvalue="2.0e-016" evalue="8.6e-012"/>
      <match seq="CTTATCA" p="109" n="36" pvalue="1.0e-010" evalue="4.3e-006"/>
      <match seq="TTTATCT" p="106" n="42" pvalue="2.1e-008" evalue="9.0e-004"/>
      <match seq="GTTATCA" p="69" n="23" pvalue="4.5e-007" evalue="1.9e-002"/>
      <match seq="GTTATCT" p="64" n="28" pvalue="7.6e-005" evalue="3.2e+000"/>
      <match seq="TTTATCA" p="61" n="26" pvalue="7.8e-005" evalue="3.3e+000"/>
    </motif>
    <motif id="m03" alt="DREME-3" seq="MCRCCCA" length="7" nsites="340" p="283" n="109" pvalue="6.9e-024" evalue="2.9e-019" unerased_evalue="2.5e-040">
      <pos A="0.458824" C="0.541176" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="0.729412" C="0.000000" G="0.270588" T="0.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <match seq="CCACCCA" p="129" n="48" pvalue="6.2e-011" evalue="2.6e-006"/>
      <match seq="ACACCCA" p="102" n="42" pvalue="1.0e-007" evalue="4.4e-003"/>
      <match seq="ACGCCCA" p="46" n="10" pvalue="4.3e-007" evalue="1.8e-002"/>
      <match seq="CCGCCCA" p="43" n="17" pvalue="4.4e-004" evalue="1.9e+001"/>
    </motif>
    <motif id="m04" alt="DREME-4" seq="RARGAAA" length="7" nsites="539" p="398" n="215" pvalue="4.8e-020" evalue="2.1e-015" unerased_evalue="2.7e-015">
      <pos A="0.543599" C="0.000000" G="0.456401" T="0.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="0.534323" C="0.000000" G="0.465677" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="1.000000" T="0.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <match seq="AAAGAAA" p="149" n="68" pvalue="2.5e-009" evalue="1.1e-004"/>
      <match seq="AAGGAAA" p="130" n="57" pvalue="9.3e-009" evalue="4.0e-004"/>
      <match seq="GAAGAAA" p="122" n="54" pvalue="3.8e-008" evalue="1.6e-003"/>
      <match seq="GAGGAAA" p="110" n="67" pvalue="4.2e-004" evalue="1.8e+001"/>
    </motif>
    <motif id="m05" alt="DREME-5" seq="AKAAAM" length="6" nsites="1018" p="585" n="415" pvalue="5.3e-016" evalue="2.3e-011" unerased_evalue="1.7e-015">
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="0.629666" T="0.370334"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="0.617878" C="0.382122" G="0.000000" T="0.000000"/>
      <match seq="AGAAAA" p="302" n="208" pvalue="5.6e-007" evalue="2.4e-002"/>
      <match seq="ATAAAA" p="192" n="117" pvalue="1.7e-006" evalue="7.3e-002"/>
      <match seq="ATAAAC" p="128" n="75" pvalue="5.0e-005" evalue="2.1e+000"/>
      <match seq="AGAAAC" p="211" n="145" pvalue="5.8e-005" evalue="2.5e+000"/>
    </motif>
    <motif id="m06" alt="DREME-6" seq="CTGTSTS" length="7" nsites="516" p="384" n="235" pvalue="9.1e-014" evalue="3.8e-009" unerased_evalue="1.6e-009">
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="0.000000" T="1.000000"/>
      <pos A="0.000000" C="0.000000" G="1.000000" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="0.000000" T="1.000000"/>
      <pos A="0.000000" C="0.531008" G="0.468992" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="0.000000" T="1.000000"/>
      <pos A="0.000000" C="0.453488" G="0.546512" T="0.000000"/>
      <match seq="CTGTGTG" p="139" n="72" pvalue="5.6e-007" evalue="2.3e-002"/>
      <match seq="CTGTCTC" p="129" n="73" pvalue="1.8e-005" evalue="7.6e-001"/>
      <match seq="CTGTCTG" p="127" n="77" pvalue="1.3e-004" evalue="5.3e+000"/>
      <match seq="CTGTGTC" p="87" n="55" pvalue="3.3e-003" evalue="1.4e+002"/>
    </motif>
    <motif id="m07" alt="DREME-7" seq="AGGGCGK" length="7" nsites="105" p="96" n="28" pvalue="8.3e-011" evalue="3.5e-006" unerased_evalue="5.9e-017">
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="1.000000" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="1.000000" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="1.000000" T="0.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="1.000000" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="0.514286" T="0.485714"/>
      <match seq="AGGGCGT" p="50" n="10" pvalue="5.1e-008" evalue="2.1e-003"/>
      <match seq="AGGGCGG" p="48" n="18" pvalue="1.1e-004" evalue="4.6e+000"/>
    </motif>
    <motif id="m08" alt="DREME-8" seq="CCTKCCY" length="7" nsites="576" p="406" n="278" pvalue="3.4e-010" evalue="1.4e-005" unerased_evalue="2.7e-008">
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="0.000000" T="1.000000"/>
      <pos A="0.000000" C="0.000000" G="0.491319" T="0.508681"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="0.467014" G="0.000000" T="0.532986"/>
      <match seq="CCTTCCT" p="144" n="85" pvalue="1.9e-005" evalue="7.9e-001"/>
      <match seq="CCTTCCC" p="122" n="75" pvalue="2.5e-004" evalue="1.0e+001"/>
      <match seq="CCTGCCC" p="125" n="82" pvalue="9.3e-004" evalue="3.9e+001"/>
      <match seq="CCTGCCT" p="135" n="94" pvalue="2.3e-003" evalue="9.5e+001"/>
    </motif>
    <motif id="m09" alt="DREME-9" seq="TTAAAAW" length="7" nsites="203" p="178" n="89" pvalue="2.1e-009" evalue="8.5e-005" unerased_evalue="3.7e-005">
      <pos A="0.000000" C="0.000000" G="0.000000" T="1.000000"/>
      <pos A="0.000000" C="0.000000" G="0.000000" T="1.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="0.605911" C="0.000000" G="0.000000" T="0.394089"/>
      <match seq="TTAAAAA" p="117" n="61" pvalue="6.1e-006" evalue="2.5e-001"/>
      <match seq="TTAAAAT" p="78" n="38" pvalue="8.0e-005" evalue="3.3e+000"/>
    </motif>
    <motif id="m10" alt="DREME-10" seq="AAATAH" length="6" nsites="494" p="350" n="242" pvalue="3.9e-008" evalue="1.6e-003" unerased_evalue="8.2e-010">
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="0.000000" T="1.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="0.354251" C="0.277328" G="0.000000" T="0.368421"/>
      <match seq="AAATAC" p="123" n="71" pvalue="4.9e-005" evalue="2.0e+000"/>
      <match seq="AAATAT" p="149" n="100" pvalue="5.1e-004" evalue="2.1e+001"/>
      <match seq="AAATAA" p="147" n="105" pvalue="2.6e-003" evalue="1.1e+002"/>
    </motif>
    <motif id="m11" alt="DREME-11" seq="CATYTCC" length="7" nsites="158" p="144" n="72" pvalue="1.1e-007" evalue="4.3e-003" unerased_evalue="2.8e-004">
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="0.000000" T="1.000000"/>
      <pos A="0.000000" C="0.455696" G="0.000000" T="0.544304"/>
      <pos A="0.000000" C="0.000000" G="0.000000" T="1.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <match seq="CATTTCC" p="79" n="32" pvalue="2.5e-006" evalue="1.0e-001"/>
      <match seq="CATCTCC" p="70" n="42" pvalue="4.1e-003" evalue="1.7e+002"/>
    </motif>
    <motif id="m12" alt="DREME-12" seq="CAGMCAC" length="7" nsites="191" p="162" n="88" pvalue="2.8e-007" evalue="1.2e-002" unerased_evalue="2.3e-005">
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="1.000000" T="0.000000"/>
      <pos A="0.434555" C="0.565445" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <match seq="CAGACAC" p="77" n="33" pvalue="9.3e-006" evalue="3.8e-001"/>
      <match seq="CAGCCAC" p="100" n="60" pvalue="5.9e-004" evalue="2.4e+001"/>
    </motif>
    <motif id="m13" alt="DREME-13" seq="CACAGY" length="6" nsites="574" p="415" n="312" pvalue="4.8e-007" evalue="2.0e-002" unerased_evalue="1.2e-005">
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="1.000000" T="0.000000"/>
      <pos A="0.000000" C="0.559233" G="0.000000" T="0.440767"/>
      <match seq="CACAGC" p="263" n="184" pvalue="1.0e-005" evalue="4.2e-001"/>
      <match seq="CACAGT" p="226" n="167" pvalue="4.6e-004" evalue="1.9e+001"/>
    </motif>
    <motif id="m14" alt="DREME-14" seq="CTGGRGA" length="7" nsites="233" p="205" n="125" pvalue="6.9e-007" evalue="2.8e-002" unerased_evalue="2.5e-004">
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="0.000000" T="1.000000"/>
      <pos A="0.000000" C="0.000000" G="1.000000" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="1.000000" T="0.000000"/>
      <pos A="0.463519" C="0.000000" G="0.536481" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="1.000000" T="0.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <match seq="CTGGGGA" p="117" n="69" pvalue="1.3e-004" evalue="5.2e+000"/>
      <match seq="CTGGAGA" p="102" n="66" pvalue="2.2e-003" evalue="9.1e+001"/>
    </motif>
    <motif id="m15" alt="DREME-15" seq="SACGTGA" length="7" nsites="44" p="43" n="9" pvalue="7.4e-007" evalue="3.0e-002" unerased_evalue="1.0e-002">
      <pos A="0.000000" C="0.590909" G="0.409091" T="0.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="1.000000" G="0.000000" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="1.000000" T="0.000000"/>
      <pos A="0.000000" C="0.000000" G="0.000000" T="1.000000"/>
      <pos A="0.000000" C="0.000000" G="1.000000" T="0.000000"/>
      <pos A="1.000000" C="0.000000" G="0.000000" T="0.000000"/>
      <match seq="CACGTGA" p="25" n="6" pvalue="4.0e-004" evalue="1.6e+001"/>
      <match seq="GACGTGA" p="18" n="3" pvalue="7.0e-004" evalue="2.9e+001"/>
    </motif>
  </motifs>
  <run_time cpu="265.43" real="267.43" stop="evalue"/>
</dreme>
