# Makefile.in generated by automake 1.16.1 from Makefile.am.
# @configure_input@

# Copyright (C) 1994-2018 Free Software Foundation, Inc.

# This Makefile.in is free software; the Free Software Foundation
# gives unlimited permission to copy and/or distribute it,
# with or without modifications, as long as this notice is preserved.

# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
# PARTICULAR PURPOSE.

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am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
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INSTALL_HEADER = $(INSTALL_DATA)
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@HAVE_PYTHON_TRUE@am__append_1 = dreme
@HAVE_PYTHON_TRUE@am__append_2 = \
@HAVE_PYTHON_TRUE@  fasta-dinucleotide-shuffle \
@HAVE_PYTHON_TRUE@  fasta-hamming-enrich

@HAVE_PYTHON3_TRUE@am__append_3 = dreme-py3
@HAVE_PYTHON3_TRUE@am__append_4 = \
@HAVE_PYTHON3_TRUE@  fasta-dinucleotide-shuffle-py3 \
@HAVE_PYTHON3_TRUE@  fasta-hamming-enrich-py3


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ACLOCAL = @ACLOCAL@
ALT_URL = @ALT_URL@
AMTAR = @AMTAR@
AM_DEFAULT_VERBOSITY = @AM_DEFAULT_VERBOSITY@
ANT = @ANT@
AR = @AR@
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AWK = @AWK@
CATALINA_HOME = @CATALINA_HOME@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CFLAGS = @CFLAGS@
CONTACT = @CONTACT@
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CPP = @CPP@
CPPFLAGS = @CPPFLAGS@
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ECHO_T = @ECHO_T@
EGREP = @EGREP@
EXEEXT = @EXEEXT@
EXPIRY = @EXPIRY@
FGREP = @FGREP@
GHOSTSCRIPT = @GHOSTSCRIPT@
GOSERVER_URL = @GOSERVER_URL@
GREP = @GREP@
HOSTNAME = @HOSTNAME@
INSTALL = @INSTALL@
INSTALL_DATA = @INSTALL_DATA@
INSTALL_PROGRAM = @INSTALL_PROGRAM@
INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
LAMBIN = @LAMBIN@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBEXSLT_CFLAGS = @LIBEXSLT_CFLAGS@
LIBEXSLT_LIBS = @LIBEXSLT_LIBS@
LIBOBJS = @LIBOBJS@
LIBS = @LIBS@
LIBTOOL = @LIBTOOL@
LIBXML2_CFLAGS = @LIBXML2_CFLAGS@
LIBXML2_LIBS = @LIBXML2_LIBS@
LIBXSLT_CFLAGS = @LIBXSLT_CFLAGS@
LIBXSLT_LIBS = @LIBXSLT_LIBS@
LIPO = @LIPO@
LN_S = @LN_S@
LTLIBOBJS = @LTLIBOBJS@
LT_SYS_LIBRARY_PATH = @LT_SYS_LIBRARY_PATH@
MACHID = @MACHID@
MAKEINFO = @MAKEINFO@
MANIFEST_TOOL = @MANIFEST_TOOL@
MAST_PORT = @MAST_PORT@
MAXTIME = @MAXTIME@
MCS = @MCS@
MEME_DB = @MEME_DB@
MEME_DIRECTORY = @MEME_DIRECTORY@
MEME_LOGS = @MEME_LOGS@
MEME_PORT = @MEME_PORT@
MEME_TEMP = @MEME_TEMP@
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MONO = @MONO@
MPICC = @MPICC@
MPIFLAGS = @MPIFLAGS@
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NEWS_URL = @NEWS_URL@
NM = @NM@
NMEDIT = @NMEDIT@
NOTICES_URL = @NOTICES_URL@
OBJDUMP = @OBJDUMP@
OBJEXT = @OBJEXT@
OPAL_DEPLOY = @OPAL_DEPLOY@
OPAL_URL = @OPAL_URL@
OPT_FLAGS = @OPT_FLAGS@
OTOOL = @OTOOL@
OTOOL64 = @OTOOL64@
PACKAGE = @PACKAGE@
PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
PACKAGE_NAME = @PACKAGE_NAME@
PACKAGE_STRING = @PACKAGE_STRING@
PACKAGE_TARNAME = @PACKAGE_TARNAME@
PACKAGE_URL = @PACKAGE_URL@
PACKAGE_VERSION = @PACKAGE_VERSION@
PATH_SEPARATOR = @PATH_SEPARATOR@
PERL = @PERL@
PREV_URL = @PREV_URL@
PREV_VER = @PREV_VER@
PYTHON = @PYTHON@
PYTHON3 = @PYTHON3@
QUOTA = @QUOTA@
RANLIB = @RANLIB@
RSCRIPT = @RSCRIPT@
SED = @SED@
SENDMAIL = @SENDMAIL@
SET_MAKE = @SET_MAKE@
SHELL = @SHELL@
SOURCE_URL = @SOURCE_URL@
STRIP = @STRIP@
URL = @URL@
VERSION = @VERSION@
WEBSERVICE = @WEBSERVICE@
XBUILD = @XBUILD@
XML2_CONFIG = @XML2_CONFIG@
XSLT_CONFIG = @XSLT_CONFIG@
abs_builddir = @abs_builddir@
abs_srcdir = @abs_srcdir@
abs_top_builddir = @abs_top_builddir@
abs_top_srcdir = @abs_top_srcdir@
ac_ct_AR = @ac_ct_AR@
ac_ct_CC = @ac_ct_CC@
ac_ct_DUMPBIN = @ac_ct_DUMPBIN@
am__include = @am__include@
am__leading_dot = @am__leading_dot@
am__quote = @am__quote@
am__tar = @am__tar@
am__untar = @am__untar@
bindir = @bindir@
build = @build@
build_alias = @build_alias@
build_cpu = @build_cpu@
build_os = @build_os@
build_vendor = @build_vendor@
builddir = @builddir@
datadir = @datadir@
datarootdir = @datarootdir@
docdir = @docdir@
dvidir = @dvidir@
exec_prefix = @exec_prefix@
host = @host@
host_alias = @host_alias@
host_cpu = @host_cpu@
host_os = @host_os@
host_vendor = @host_vendor@
htmldir = @htmldir@
includedir = @includedir@
infodir = @infodir@
install_sh = @install_sh@
libdir = @libdir@
libexecdir = @libexecdir@
localedir = @localedir@
localstatedir = @localstatedir@
mandir = @mandir@
mkdir_p = @mkdir_p@
oldincludedir = @oldincludedir@
pdfdir = @pdfdir@
prefix = @prefix@
program_transform_name = @program_transform_name@
psdir = @psdir@
sbindir = @sbindir@
sharedstatedir = @sharedstatedir@
srcdir = @srcdir@
sysconfdir = @sysconfdir@
target_alias = @target_alias@
top_build_prefix = @top_build_prefix@
top_builddir = @top_builddir@
top_srcdir = @top_srcdir@

# Set installation location for doc files.
memedatadir = $(DESTDIR)${datadir}/${PACKAGE_NAME}-${PACKAGE_VERSION}
@WEBSITE_FALSE@MEME_DOC_DIR = $(DESTDIR)$(memedatadir)/doc
@WEBSITE_TRUE@MEME_DOC_DIR = $(DESTDIR)$(WEBDIR)/doc
memelibdir = ${libdir}/${PACKAGE_NAME}-${PACKAGE_VERSION}
memelibexecdir = ${libexecdir}/${PACKAGE_NAME}-${PACKAGE_VERSION}
ARCHIVE_REVISION = $(shell cat ../ARCHIVE_REVISION)
ARCHIVE_DATE = $(shell cat ../ARCHIVE_DATE)
@CISMAPPER_AVAILABLE_TRUE@CISMAPPER_SCRIPT = cismapper
SEDSPEC = \
  -e 's%@ARCHIVE_REVISION@%$(ARCHIVE_REVISION)%' \
  -e 's%@ARCHIVE_DATE@%$(ARCHIVE_DATE)%' \
  -e 's%@ARCHIVE_VERSION@%$(VERSION)%' \
  -e 's%@TMP_DIR@%$(MEME_TEMP)%' \
  -e 's%@WHICHMONO@%$(MONO)%' \
  -e 's%@WHICHPERL@%$(PERL)%' \
  -e 's%@WHICHPYTHON@%$(PYTHON)%' \
  -e 's%@WHICHPYTHON3@%$(PYTHON3)%' \
  -e 's%@WHICHJAVA@%$(JAVA)%' \
  -e 's%@WHICHCONVERT@%$(CONVERT)%' \
  -e 's%@WHICHGHOSTSCRIPT@%$(GHOSTSCRIPT)%' \
  -e 's%@PERLLIBDIR@%$(memelibdir)/perl%' \
  -e 's%@PYTHONLIBDIR@%$(memelibdir)/python%' \
  -e 's%@JAVALIBDIR@%$(memelibdir)/java%' \
  -e 's%@LAM_BIN@%$(LAMBIN)%' \
  -e 's%@APPCONFIGDIR@%$(memedatadir)%' \
  -e 's%@BINDIR@%$(bindir)%' \
  -e 's%@LIBEXECDIR@%$(memelibexecdir)%' \
  -e 's%@MEMELOGS@%$(MEME_LOGS)%' \
  -e 's%@MEMEDB@%$(MEME_DB)%' \
  -e 's%@SITE_URL@%$(URL)%g' \
  -e 's%\@SOURCE_URL\@%$(SOURCE_URL)%g' \
  -e 's%@MAX_TIME@%$(MAXTIME)%' \
  -e 's%@DOCDIR@%$(MEME_DOC_DIR)/%'

BUILT_PERL_MOD = \
  Globals.pm \
  MemeWebUtils.pm \
  StatusPage.pm

NORMAL_PERL_MOD = \
  Alphabet.pm \
  CheckingSAX.pm \
  DremeSAX.pm \
  ExecUtils.pm \
  HtmlMonolithWr.pm \
  JsonRdr.pm \
  JsonWr.pm \
  MastSAX.pm \
  MemeSAX.pm \
  MotifInDremeXML.pm \
  MotifInMemeXML.pm \
  MotifUtils.pm \
  PriorUtils.pm \
  ReadFastaFile.pm \
  TomtomSAX.pm

OTHER_PERL_MOD = \
  CombDynProg.pm \
  DiffJSON.pm \
  DiffXML.pm \
  HypergeometricDynProg.pm

perlmoddir = $(memelibdir)/perl
perlmod_SCRIPTS = \
  $(BUILT_PERL_MOD) \
  $(NORMAL_PERL_MOD)

NORMAL_PYTHON_LIB_SRC = \
  alphabet.py \
  hypergeometric.py \
  sequence.py

BUILT_PYTHON_LIB_SRC = \
  fasta-dinucleotide-shuffle.py \
  fasta-hamming-enrich.py

NORMAL_PYTHON3_LIB_SRC = \
  alphabet_py3.py \
  hypergeometric_py3.py \
  sequence_py3.py

BUILT_PYTHON3_LIB_SRC = \
  fasta-dinucleotide-shuffle-py3.py \
  fasta-hamming-enrich-py3.py

@HAVE_PYTHON_TRUE@NORMAL_PYTHON_LIB := $(NORMAL_PYTHON_LIB_SRC)
@HAVE_PYTHON_TRUE@BUILT_PYTHON_LIB := $(BUILT_PYTHON_LIB_SRC)
@HAVE_PYTHON3_TRUE@NORMAL_PYTHON3_LIB := $(NORMAL_PYTHON3_LIB_SRC)
@HAVE_PYTHON3_TRUE@BUILT_PYTHON3_LIB := $(BUILT_PYTHON3_LIB_SRC)
pythonlibdir = $(memelibdir)/python
pythonlib_SCRIPTS = \
  $(BUILT_PYTHON_LIB) \
  $(NORMAL_PYTHON_LIB) \
  $(BUILT_PYTHON3_LIB) \
  $(NORMAL_PYTHON3_LIB)

INPUT_FILES = $(wildcard *.in)
BUILT_UTILS = ama-qvalues beeml2meme $(CISMAPPER_SCRIPT) \
	dreme_xml_to_html dreme_xml_to_txt elm2meme fasta-center \
	fasta-dinucleotide-shuffle fasta-fetch fasta-hamming-enrich \
	fasta-make-index fasta-most fasta-re-match fasta-subsample \
	fasta-unique-names glam2html glam2psfm glam2scan2html \
	chen2meme jaspar2meme hart2meme-bkg hartemink2psp iupac2meme \
	mast_xml_to_html mast_xml_to_txt matrix2meme \
	meme-chip_html_to_tsv meme-rename meme_xml_to_html nmica2meme \
	priority2meme psp-gen rsat-retrieve-seq \
	rsat-supported-organisms rna2meme scpd2meme sites2meme \
	taipale2meme tamo2meme tomtom_xml_to_html transfac2meme \
	uniprobe2meme $(am__append_2) $(am__append_4)
PROGS = meme-chip $(am__append_1) $(am__append_3)
UTILS = \
  fasta-grep \
  plotgen \
  sd \
  $(BUILT_UTILS)

OBSOLETE_UTILS = \
  fasta-enriched-center \
  mhmm2html


# services
BUILT_DUALUSE_SERVICES = \
  tomtom_webservice

BUILT_WEBSERVICE_SERVICES = \
  ame_webservice \
  centrimo_webservice \
  cismapper_webservice \
  dreme_webservice \
  fimo_webservice \
  glam2_webservice \
  glam2scan_webservice \
  gomo_webservice \
  mast_webservice \
  mcast_webservice \
  meme-chip_webservice \
  meme_webservice \
  momo_webservice \
  spamo_webservice


#utilities
WEBSITE_BUILT_WEBUTILS = \
  lrun \
  texit \
  update-plot-usage \
  update-sequence-db

WEBSITE_WEBUTILS = \
  plot-usage \
  usage-reports \
  $(WEBSITE_BUILT_WEBUTILS)

MEME_SERVICES = $(am__append_5) $(am__append_6) $(am__append_7)
MEME_WEBUTILS = $(am__append_8)

# Set automake targets
bin_SCRIPTS = $(PROGS) 
memelibexec_SCRIPTS = $(UTILS) $(MEME_WEBUTILS) $(MEME_SERVICES)

# Define which files to delete if target is 'make clean'.
CLEANFILES = \
  $(BUILT_WEBSERVICE_SERVICES) \
  $(BUILT_PERL_MOD) \
  $(BUILT_PYTHON_LIB) \
  $(BUILT_PYTHON3_LIB) \
  $(BUILT_UTILS) \
  $(PROGS) \
  $(WEBSITE_BUILT_WEBUTILS) \
  $(MEME_SERVICES)

EXTRA_DIST = \
  $(NORMAL_PERL_MOD) \
  $(OTHER_PERL_MOD) \
  $(NORMAL_PYTHON_LIB_SRC) \
  $(NORMAL_PYTHON3_LIB_SRC) \
  dependencies.pl \
  fasta-grep \
  obo2dag.jar \
  plotgen \
  plot-usage \
  sd \
  usage-reports \
  $(INPUT_FILES)

all: all-am

.SUFFIXES:
$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
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	  case '$(am__configure_deps)' in \
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	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
	        && { if test -f $@; then exit 0; else break; fi; }; \
	      exit 1;; \
	  esac; \
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	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu scripts/Makefile'; \
	$(am__cd) $(top_srcdir) && \
	  $(AUTOMAKE) --gnu scripts/Makefile
Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
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	  *config.status*) \
	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
	  *) \
	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__maybe_remake_depfiles)'; \
	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__maybe_remake_depfiles);; \
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$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh

$(top_srcdir)/configure:  $(am__configure_deps)
	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
$(am__aclocal_m4_deps):
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	@$(NORMAL_INSTALL)
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	if test -n "$$list"; then \
	  echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \
	  $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \
	fi; \
	for p in $$list; do \
	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
	  if test -f "$$d$$p"; then echo "$$d$$p"; echo "$$p"; else :; fi; \
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	sed -e 'p;s,.*/,,;n' \
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	    -e 'p;x;s,.*/,,;$(transform)' | sed 'N;N;N;s,\n, ,g' | \
	$(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1; } \
	  { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \
	    if ($$2 == $$4) { files[d] = files[d] " " $$1; \
	      if (++n[d] == $(am__install_max)) { \
		print "f", d, files[d]; n[d] = 0; files[d] = "" } } \
	    else { print "f", d "/" $$4, $$1 } } \
	  END { for (d in files) print "f", d, files[d] }' | \
	while read type dir files; do \
	     if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \
	     test -z "$$files" || { \
	       echo " $(INSTALL_SCRIPT) $$files '$(DESTDIR)$(bindir)$$dir'"; \
	       $(INSTALL_SCRIPT) $$files "$(DESTDIR)$(bindir)$$dir" || exit $$?; \
	     } \
	; done

uninstall-binSCRIPTS:
	@$(NORMAL_UNINSTALL)
	@list='$(bin_SCRIPTS)'; test -n "$(bindir)" || exit 0; \
	files=`for p in $$list; do echo "$$p"; done | \
	       sed -e 's,.*/,,;$(transform)'`; \
	dir='$(DESTDIR)$(bindir)'; $(am__uninstall_files_from_dir)
install-memelibexecSCRIPTS: $(memelibexec_SCRIPTS)
	@$(NORMAL_INSTALL)
	@list='$(memelibexec_SCRIPTS)'; test -n "$(memelibexecdir)" || list=; \
	if test -n "$$list"; then \
	  echo " $(MKDIR_P) '$(DESTDIR)$(memelibexecdir)'"; \
	  $(MKDIR_P) "$(DESTDIR)$(memelibexecdir)" || exit 1; \
	fi; \
	for p in $$list; do \
	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
	  if test -f "$$d$$p"; then echo "$$d$$p"; echo "$$p"; else :; fi; \
	done | \
	sed -e 'p;s,.*/,,;n' \
	    -e 'h;s|.*|.|' \
	    -e 'p;x;s,.*/,,;$(transform)' | sed 'N;N;N;s,\n, ,g' | \
	$(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1; } \
	  { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \
	    if ($$2 == $$4) { files[d] = files[d] " " $$1; \
	      if (++n[d] == $(am__install_max)) { \
		print "f", d, files[d]; n[d] = 0; files[d] = "" } } \
	    else { print "f", d "/" $$4, $$1 } } \
	  END { for (d in files) print "f", d, files[d] }' | \
	while read type dir files; do \
	     if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \
	     test -z "$$files" || { \
	       echo " $(INSTALL_SCRIPT) $$files '$(DESTDIR)$(memelibexecdir)$$dir'"; \
	       $(INSTALL_SCRIPT) $$files "$(DESTDIR)$(memelibexecdir)$$dir" || exit $$?; \
	     } \
	; done

uninstall-memelibexecSCRIPTS:
	@$(NORMAL_UNINSTALL)
	@list='$(memelibexec_SCRIPTS)'; test -n "$(memelibexecdir)" || exit 0; \
	files=`for p in $$list; do echo "$$p"; done | \
	       sed -e 's,.*/,,;$(transform)'`; \
	dir='$(DESTDIR)$(memelibexecdir)'; $(am__uninstall_files_from_dir)
install-perlmodSCRIPTS: $(perlmod_SCRIPTS)
	@$(NORMAL_INSTALL)
	@list='$(perlmod_SCRIPTS)'; test -n "$(perlmoddir)" || list=; \
	if test -n "$$list"; then \
	  echo " $(MKDIR_P) '$(DESTDIR)$(perlmoddir)'"; \
	  $(MKDIR_P) "$(DESTDIR)$(perlmoddir)" || exit 1; \
	fi; \
	for p in $$list; do \
	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
	  if test -f "$$d$$p"; then echo "$$d$$p"; echo "$$p"; else :; fi; \
	done | \
	sed -e 'p;s,.*/,,;n' \
	    -e 'h;s|.*|.|' \
	    -e 'p;x;s,.*/,,;$(transform)' | sed 'N;N;N;s,\n, ,g' | \
	$(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1; } \
	  { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \
	    if ($$2 == $$4) { files[d] = files[d] " " $$1; \
	      if (++n[d] == $(am__install_max)) { \
		print "f", d, files[d]; n[d] = 0; files[d] = "" } } \
	    else { print "f", d "/" $$4, $$1 } } \
	  END { for (d in files) print "f", d, files[d] }' | \
	while read type dir files; do \
	     if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \
	     test -z "$$files" || { \
	       echo " $(INSTALL_SCRIPT) $$files '$(DESTDIR)$(perlmoddir)$$dir'"; \
	       $(INSTALL_SCRIPT) $$files "$(DESTDIR)$(perlmoddir)$$dir" || exit $$?; \
	     } \
	; done

uninstall-perlmodSCRIPTS:
	@$(NORMAL_UNINSTALL)
	@list='$(perlmod_SCRIPTS)'; test -n "$(perlmoddir)" || exit 0; \
	files=`for p in $$list; do echo "$$p"; done | \
	       sed -e 's,.*/,,;$(transform)'`; \
	dir='$(DESTDIR)$(perlmoddir)'; $(am__uninstall_files_from_dir)
install-pythonlibSCRIPTS: $(pythonlib_SCRIPTS)
	@$(NORMAL_INSTALL)
	@list='$(pythonlib_SCRIPTS)'; test -n "$(pythonlibdir)" || list=; \
	if test -n "$$list"; then \
	  echo " $(MKDIR_P) '$(DESTDIR)$(pythonlibdir)'"; \
	  $(MKDIR_P) "$(DESTDIR)$(pythonlibdir)" || exit 1; \
	fi; \
	for p in $$list; do \
	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
	  if test -f "$$d$$p"; then echo "$$d$$p"; echo "$$p"; else :; fi; \
	done | \
	sed -e 'p;s,.*/,,;n' \
	    -e 'h;s|.*|.|' \
	    -e 'p;x;s,.*/,,;$(transform)' | sed 'N;N;N;s,\n, ,g' | \
	$(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1; } \
	  { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \
	    if ($$2 == $$4) { files[d] = files[d] " " $$1; \
	      if (++n[d] == $(am__install_max)) { \
		print "f", d, files[d]; n[d] = 0; files[d] = "" } } \
	    else { print "f", d "/" $$4, $$1 } } \
	  END { for (d in files) print "f", d, files[d] }' | \
	while read type dir files; do \
	     if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \
	     test -z "$$files" || { \
	       echo " $(INSTALL_SCRIPT) $$files '$(DESTDIR)$(pythonlibdir)$$dir'"; \
	       $(INSTALL_SCRIPT) $$files "$(DESTDIR)$(pythonlibdir)$$dir" || exit $$?; \
	     } \
	; done

uninstall-pythonlibSCRIPTS:
	@$(NORMAL_UNINSTALL)
	@list='$(pythonlib_SCRIPTS)'; test -n "$(pythonlibdir)" || exit 0; \
	files=`for p in $$list; do echo "$$p"; done | \
	       sed -e 's,.*/,,;$(transform)'`; \
	dir='$(DESTDIR)$(pythonlibdir)'; $(am__uninstall_files_from_dir)

mostlyclean-libtool:
	-rm -f *.lo

clean-libtool:
	-rm -rf .libs _libs
tags TAGS:

ctags CTAGS:

cscope cscopelist:


distdir: $(BUILT_SOURCES)
	$(MAKE) $(AM_MAKEFLAGS) distdir-am

distdir-am: $(DISTFILES)
	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
	list='$(DISTFILES)'; \
	  dist_files=`for file in $$list; do echo $$file; done | \
	  sed -e "s|^$$srcdirstrip/||;t" \
	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
	case $$dist_files in \
	  */*) $(MKDIR_P) `echo "$$dist_files" | \
			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
			   sort -u` ;; \
	esac; \
	for file in $$dist_files; do \
	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
	  if test -d $$d/$$file; then \
	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
	    if test -d "$(distdir)/$$file"; then \
	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
	    fi; \
	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
	      cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
	    fi; \
	    cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
	  else \
	    test -f "$(distdir)/$$file" \
	    || cp -p $$d/$$file "$(distdir)/$$file" \
	    || exit 1; \
	  fi; \
	done
check-am: all-am
check: check-am
all-am: Makefile $(SCRIPTS)
installdirs:
	for dir in "$(DESTDIR)$(bindir)" "$(DESTDIR)$(memelibexecdir)" "$(DESTDIR)$(perlmoddir)" "$(DESTDIR)$(pythonlibdir)"; do \
	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
	done
install: install-am
install-exec: install-exec-am
install-data: install-data-am
uninstall: uninstall-am

install-am: all-am
	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am

installcheck: installcheck-am
install-strip:
	if test -z '$(STRIP)'; then \
	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
	      install; \
	else \
	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
	    "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \
	fi
mostlyclean-generic:

clean-generic:
	-test -z "$(CLEANFILES)" || rm -f $(CLEANFILES)

distclean-generic:
	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
	-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)

maintainer-clean-generic:
	@echo "This command is intended for maintainers to use"
	@echo "it deletes files that may require special tools to rebuild."
clean: clean-am

clean-am: clean-generic clean-libtool mostlyclean-am

distclean: distclean-am
	-rm -f Makefile
distclean-am: clean-am distclean-generic

dvi: dvi-am

dvi-am:

html: html-am

html-am:

info: info-am

info-am:

install-data-am: install-perlmodSCRIPTS install-pythonlibSCRIPTS

install-dvi: install-dvi-am

install-dvi-am:

install-exec-am: install-binSCRIPTS install-memelibexecSCRIPTS

install-html: install-html-am

install-html-am:

install-info: install-info-am

install-info-am:

install-man:

install-pdf: install-pdf-am

install-pdf-am:

install-ps: install-ps-am

install-ps-am:

installcheck-am:

maintainer-clean: maintainer-clean-am
	-rm -f Makefile
maintainer-clean-am: distclean-am maintainer-clean-generic

mostlyclean: mostlyclean-am

mostlyclean-am: mostlyclean-generic mostlyclean-libtool

pdf: pdf-am

pdf-am:

ps: ps-am

ps-am:

uninstall-am: uninstall-binSCRIPTS uninstall-memelibexecSCRIPTS \
	uninstall-perlmodSCRIPTS uninstall-pythonlibSCRIPTS

.MAKE: install-am install-strip

.PHONY: all all-am check check-am clean clean-generic clean-libtool \
	cscopelist-am ctags-am distclean distclean-generic \
	distclean-libtool distdir dvi dvi-am html html-am info info-am \
	install install-am install-binSCRIPTS install-data \
	install-data-am install-dvi install-dvi-am install-exec \
	install-exec-am install-html install-html-am install-info \
	install-info-am install-man install-memelibexecSCRIPTS \
	install-pdf install-pdf-am install-perlmodSCRIPTS install-ps \
	install-ps-am install-pythonlibSCRIPTS install-strip \
	installcheck installcheck-am installdirs maintainer-clean \
	maintainer-clean-generic mostlyclean mostlyclean-generic \
	mostlyclean-libtool pdf pdf-am ps ps-am tags-am uninstall \
	uninstall-am uninstall-binSCRIPTS uninstall-memelibexecSCRIPTS \
	uninstall-perlmodSCRIPTS uninstall-pythonlibSCRIPTS

.PRECIOUS: Makefile


# Describe dependencies and build instructions for scripts.
# (substitute in local path to Perl).

# input files with unusual build names
MemeWebUtils.pm: MemeWebUtils.pm.in Makefile
	$(SED) $(SEDSPEC) $< > $@
StatusPage.pm: StatusPage.pm.in Makefile
	$(SED) $(SEDSPEC) $< > $@
Globals.pm: Globals.pm.in Makefile
	$(SED) $(SEDSPEC) $< > $@

# sh input files
%: %.sh.in
	$(SED) $(SEDSPEC) $< > $@; \
  chmod +x $@

# csh input files
%: %.csh.in
	$(SED) $(SEDSPEC) $< > $@; \
  chmod +x $@

# perl input files
%: %.pl.in
	$(SED) $(SEDSPEC) $< > $@; \
  chmod +x $@

# python input files
%: %.py.in sequence.py hypergeometric.py ../ARCHIVE_DATE ../ARCHIVE_REVISION
	$(SED) $(SEDSPEC) $< > $@; \
  chmod +x $@
	rm -f ../src/$@
	ln $@ ../src/$@ # Copy to src for testing purposes

# need these to allow use as a Python library or for command line
# Python modules assume a file suffix of .py.
@HAVE_PYTHON_TRUE@fasta-hamming-enrich.py: fasta-hamming-enrich
@HAVE_PYTHON_TRUE@	cp fasta-hamming-enrich fasta-hamming-enrich.py
@HAVE_PYTHON_TRUE@	echo $(BUILT_PYTHON_LIB)
@HAVE_PYTHON_TRUE@	echo $(NORMAL_PYTHON_LIB)
@HAVE_PYTHON_TRUE@fasta-dinucleotide-shuffle.py: fasta-dinucleotide-shuffle
@HAVE_PYTHON_TRUE@	cp fasta-dinucleotide-shuffle fasta-dinucleotide-shuffle.py

# python3 input files
@HAVE_PYTHON3_TRUE@dreme-py3: dreme_py3.py.in alphabet_py3.py sequence_py3.py hypergeometric_py3.py ../ARCHIVE_DATE ../ARCHIVE_REVISION
@HAVE_PYTHON3_TRUE@	$(SED) $(SEDSPEC) $< > $@; \
@HAVE_PYTHON3_TRUE@  chmod +x $@
@HAVE_PYTHON3_TRUE@	rm -f ../src/$@
@HAVE_PYTHON3_TRUE@	ln $@ ../src/$@ # Copy to src for testing purposes
@HAVE_PYTHON3_TRUE@fasta-dinucleotide-shuffle-py3: fasta-dinucleotide-shuffle-py3.in  ../ARCHIVE_DATE ../ARCHIVE_REVISION
@HAVE_PYTHON3_TRUE@	$(SED) $(SEDSPEC) $< > $@; \
@HAVE_PYTHON3_TRUE@  chmod +x $@
@HAVE_PYTHON3_TRUE@fasta-dinucleotide-shuffle-py3.py: fasta-dinucleotide-shuffle-py3
@HAVE_PYTHON3_TRUE@	cp fasta-dinucleotide-shuffle-py3 fasta-dinucleotide-shuffle-py3.py
@HAVE_PYTHON3_TRUE@fasta-hamming-enrich-py3: fasta-hamming-enrich-py3.in  ../ARCHIVE_DATE ../ARCHIVE_REVISION
@HAVE_PYTHON3_TRUE@	$(SED) $(SEDSPEC) $< > $@; \
@HAVE_PYTHON3_TRUE@  chmod +x $@
@HAVE_PYTHON3_TRUE@fasta-hamming-enrich-py3.py: fasta-hamming-enrich-py3
@HAVE_PYTHON3_TRUE@	cp  fasta-hamming-enrich-py3 fasta-hamming-enrich-py3.py

# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT:
