ó
†@Ì\c           @   sz  d  d l  m Z d  d l Z d  d l Z d  d l m Z d  d l m	 Z	 d  d l
 m Z i d e d ƒ 6d e d ƒ 6d	 e d
 ƒ 6Z d d d g Z d d d g Z d d d g Z d d d g Z d d d g Z e j d ƒ Z i i d d d g d 6d d d g d 6d d d g d 6d d d g d 6d 6i d e d 6d e d 6d  e d 6d! e d 6d" 6i d d# d g d$ 6d d d g d% 6d& 6i e d' 6e d( 6e d) 6e d* 6e d+ 6d	 6i d, d- d. g d/ 6d d d0 g d1 6d- d  d2 g d3 6d4 d! d5 g d6 6d! d  d7 g d8 6d d d g d9 6d: d; d: g d< 6d- d  d: g d 6d d= d> g d? 6d@ d4 d4 g dA 6d! d  d! g dB 6dC d d g dD 6d dE d; g dF 6dG d d g dH 6d d dI g dJ 6d; d dK g dL 6dM dN dK g d 6d- d0 d g dO 6dP dQ d- g dR 6d d  d  g d 6dS 6i dT d 6dT d 6dU dO 6dU dL 6dT d/ 6dT d 6dV d9 6dT d8 6dV dJ 6dT d3 6dT dB 6dT dD 6dT dR 6dT dF 6dV dH 6dT d? 6dT dA 6dT d6 6dT d< 6dT d1 6dW 6i dX d 6dY d 6dZ dO 6dZ dL 6d[ d/ 6dX d 6d\ d9 6d] d8 6d\ dJ 6d] d3 6d] dB 6d^ dD 6d] dR 6d^ dF 6d\ dH 6dY d? 6dY dA 6d] d6 6d[ d< 6d[ d1 6d_ 6i d d d g d` 6d d d g da 6d d d g db 6dc 6i d d d g dd 6d d d g d) 6d d d g de 6d d d g d( 6d d d g df 6dg 6i d d d g de 6d d d g d( 6d d d g dh 6di 6i d: d, d: g dj 6dk dk dl g dm 6d dn dQ g do 6d2 dp dq g dr 6d d. ds g dt 6d dk du g dv 6dw 6Z dx „  Z dy „  Z dz „  Z d{ „  Z d| „  Z d S(}   iÿÿÿÿ(   t   divisionN(   t   to_rgb(   t   check(   t   ALPHABET_DICTt   classict   ACGTt   ACGUt   weblogo_proteint   ACDEFGHIKLMNPQRSTVWYg{®Gáz”?g
×£p=
·?g®Gáz®ç?gÂõ(\ê?g)\Âõ(¼?g      è?g¤p=
×£À?g333333Ã?g{®Gáz¤?g{®Gáz´?i    i   i   gÍÌÌÌÌÌä?t   Gt   TUt   Cg      à?t   Agš™™™™™É?gš™™™™™Ù?g333333ã?gš™™™™™é?t   graysgš™™™™™á?t   TAUt   GCt   base_pairingt   RHKt   DEt   QNt   GCSTYt   ILMAFVPWg{®GázÄ?g®Gáz®ï?g
×£p=
Ç?t   Fgš™™™™™©?t   Yg      Ð?t   Lg      ð?gHáz®GÑ?t   Vg¸…ëQ¸Î?t   It   Hgáz®GáÚ?gHáz®Gé?t   WgìQ¸…ëÁ?g\Âõ(\ï?t   SgÃõ(\ÂÅ?t   Tt   Mgáz®GáÊ?t   Ng=
×£p=Ú?t   Qgáz®Gáâ?t   Rg¸…ëQ¸ž?t   Kg)\Âõ(Ì?t   Egffffffî?g®Gázî?t   Dgš™™™™™¹?g…ëQ¸…ã?t   Pt   skylign_proteins   #000000s   #0000FFs   #FF0000t   dmslogo_charges   #f76ab4s   #ff7f00s   #e41a1cs   #84380bs   #3c58e5s   #12ab0ds   #972aa8t   dmslogo_funcgroupt   RKDENQt   SGHTAPt   YVMCLFIWt   hydrophobicityt   GSTYCt   KRHt   AVLIPWFMt	   chemistryt   GSTYCQNAVLIPWFMt   charget   DECg®GázÞ?g        t   PGgffffffÖ?t   MIWALFVg\Âõ(\ç?gìQ¸…ëÑ?t   NTSQg¸…ëQ¸¾?t   RKgq=
×£pÝ?t   HYt   NajafabadiEtAl2017c          C   s£   t  t j ƒ  ƒ }  t j ƒ  } x~ t |  ƒ D]p \ } } t | } t  d j t  | j ƒ  ƒ ƒ ƒ } | j ƒ  | | j | d f <d j | ƒ | j | d f <q+ W| S(   s	  
    Provides user with a list of valid color_schemes built into Logomaker.

    returns
    -------
    colors_df: (dataframe)
        A pandas dataframe listing each color_scheme and the corresponding
        set of characters for which colors are specified.
    t    t   color_schemet
   characters(	   t   listt   COLOR_SCHEME_DICTt   keyst   pdt	   DataFramet	   enumeratet   joint   sortt   loc(   t   namest	   colors_dft   it   nameR<   R=   (    (    s   ../../logomaker/src/colors.pyt   list_color_schemesž   s    
!
 c         C   s;   t  g  |  j ƒ  D]$ \ } } | | k r | | f ^ q ƒ S(   s<    Restricts a in_dict to keys that fall within keys_to_keep. (   t   dictt   items(   t   in_dictt   keys_to_keept   kt   v(    (    s   ../../logomaker/src/colors.pyt   _restrict_dictµ   s    c         C   s\   i  } xO |  j  ƒ  D]A } |  | } x. | D]& } | | | j ƒ  <| | | j ƒ  <q* Wq W| S(   sò    Expands the string keys in color_dict, returning new_dict that has
    the same values but whose keys are single characters. These single
    characters are both uppercase and lowercase versions of the characters
    in the color_dict keys. (   R@   t   uppert   lower(   t
   color_dictt   new_dictt   keyt   valuet   char(    (    s   ../../logomaker/src/colors.pyt   _expand_color_dictº   s    
c         C   sÊ   d } t |  t ƒ rL y t j t |  ƒ ƒ } WqÆ t t d |  ƒ qÆ Xnz t |  t t	 t j
 f ƒ r¯ t t |  ƒ d k d ƒ t t d „  |  Dƒ ƒ d ƒ t j |  ƒ } n t t d t |  ƒ ƒ | S(   sL   
    Safely returns an RGB np.ndarray given a valid color specification
    s   invalid choice: color_spec=%si   s,   color_scheme, if array, must be of length 3.c         s   s+   |  ]! } d  | k o  d k n Vq d S(   i    i   N(    (   t   .0t   x(    (    s   ../../logomaker/src/colors.pys	   <genexpr>ä   s    s7   Values of color_spec must be between 0 and 1 inclusive.s!   type(color_spec) = %s is invalid.N(   t   Nonet
   isinstancet   strt   npt   arrayR   R   t   FalseR>   t   tuplet   ndarrayt   lent   allt   type(   t
   color_spect   rgb(    (    s   ../../logomaker/src/colors.pyt   get_rgbÈ   s    c   	      C   s*  t  t | t t t t j f ƒ d ƒ t  t | ƒ d k d ƒ t | ƒ } | j ƒ  xb t	 | ƒ D]T \ } } t | ƒ } t  t | t ƒ oš t | ƒ d k d | t
 | ƒ f d ƒ qa W|  d k rõ t | ƒ } t j | d ƒ }  t |  | ƒ } nÓt |  t ƒ ryx8 |  j ƒ  D]* } t  t | t ƒ d t
 | ƒ d ƒ qWt |  ƒ } xz| j ƒ  D] } t | | ƒ | | <qXWnOt |  t ƒ rF|  t j ƒ  k rót |  } t | ƒ } x | j ƒ  D]/ } | | } t | ƒ } t j | ƒ | | <q½WqÈy5 t |  ƒ } t g  | D] } | | f ^ qƒ } WqÈt  t d	 |  ƒ qÈXn‚ t |  t t t j f ƒ r±t  t |  ƒ d
 k d ƒ t j |  ƒ } t g  | D] } | | f ^ q“ƒ } n t  t d t |  ƒ ƒ t | ƒ t | j ƒ  ƒ k s&x= | D]2 } | | k ríd | d GHt d ƒ | | <qíqíWn  | S(   si   
    Return a color_dict constructed from a user-specified color_scheme and
    a list of characters
    s$   chars must be a str or be array-likei   s   chars must have length >= 1s    entry number %d in chars is %s; s"   must instead be a single charactert   grays&   color_scheme dict contains a key (%s) s   that is not of type str.s   invalid choice: color_scheme=%si   s,   color_scheme, if array, must be of length 3.s'   Error: color_scheme has invalid type %ss/    Warning: Character '%s' is not in color_dict. s   Using black.t   blackN(   R   R^   R_   R>   Rc   R`   Rd   Re   RE   RC   t   reprR]   t   CHARS_TO_COLORS_DICTt   gett   get_color_dictRL   R@   RZ   R   R?   Ra   Rb   Rg   t   set(	   R<   t   charsRI   t   cRW   RU   t   tmp_dictt   colorRi   (    (    s   ../../logomaker/src/colors.pyRp   ò   sd    
!

)((   t
   __future__R    t   numpyR`   t   pandasRA   t   matplotlib.colorsR   t   logomaker.src.error_handlingR   t   logomaker.src.matrixR   Rc   Rn   t   weblogo_bluet   weblogo_pinkt   weblogo_greent   weblogo_redt   weblogo_blackt   onest
   three_onesR?   RK   RR   RZ   Rj   Rp   (    (    (    s   ../../logomaker/src/colors.pyt   <module>   sø   				*