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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| CA_code/ | 2019-02-08 10:06 | - | |
| alp/ | 2019-02-08 10:08 | - | |
| gumbel_params/ | 2019-02-08 10:06 | - | |
| split/ | 2019-02-08 10:08 | - | |
| version.hh | 2018-12-26 07:28 | 6 | |
| getoptUtil.hh | 2017-06-02 10:27 | 252 | |
| fileMap.hh | 2016-03-11 07:47 | 613 | |
| GeneralizedAffineGapCosts.cc | 2016-12-16 10:11 | 691 | |
| AlignmentPot.cc | 2015-06-08 06:33 | 703 | |
| SegmentPair.cc | 2013-05-23 00:23 | 739 | |
| threadUtil.hh | 2016-03-11 07:47 | 778 | |
| zio.hh | 2017-11-08 09:32 | 810 | |
| VectorOrMmap.hh | 2016-03-11 07:47 | 820 | |
| DiagonalTable.cc | 2013-05-23 00:23 | 857 | |
| CyclicSubsetSeedData.hh | 2015-09-18 09:28 | 873 | |
| ScoreMatrixRow.hh | 2013-05-23 00:23 | 887 | |
| io.hh | 2017-11-08 09:32 | 1.0K | |
| SequenceFormat.hh | 2018-10-30 12:22 | 1.1K | |
| TantanMasker.cc | 2018-04-20 14:43 | 1.2K | |
| SubsetMinimizerFinder.hh | 2016-03-11 07:47 | 1.2K | |
| SegmentPair.hh | 2016-12-13 05:53 | 1.3K | |
| SubsetMinimizerFinder.cc | 2016-03-11 07:47 | 1.3K | |
| DiagonalTable.hh | 2016-12-13 05:53 | 1.4K | |
| TantanMasker.hh | 2015-01-30 10:22 | 1.4K | |
| GeneralizedAffineGapCosts.o | 2019-02-08 10:07 | 1.4K | |
| LastdbArguments.hh | 2017-10-20 13:09 | 1.4K | |
| SegmentPair.o | 2019-02-08 10:08 | 1.4K | |
| SegmentPair.o8 | 2019-02-08 10:08 | 1.4K | |
| stringify.hh | 2016-11-22 08:03 | 1.5K | |
| last.hh | 2018-10-30 12:22 | 1.5K | |
| mcf_zstream.hh | 2017-10-20 13:09 | 1.6K | |
| gaplessPssmXdrop.hh | 2016-09-29 09:18 | 1.6K | |
| GeneralizedAffineGapCosts.hh | 2016-12-16 10:11 | 1.6K | |
| last-pair-probs.hh | 2014-12-19 10:18 | 1.6K | |
| ScoreMatrix.hh | 2018-04-20 14:43 | 1.7K | |
| fileMap.cc | 2016-03-11 07:47 | 1.7K | |
| LambdaCalculator.hh | 2015-10-07 09:30 | 2.0K | |
| AlignmentPot.hh | 2015-06-08 06:33 | 2.1K | |
| GreedyXdropAligner.hh | 2016-03-31 05:27 | 2.2K | |
| qualityScoreUtil.hh | 2018-04-20 14:43 | 2.3K | |
| Alphabet.hh | 2017-10-10 12:22 | 2.3K | |
| Mmap.hh | 2016-03-11 07:47 | 2.3K | |
| GeneticCode.hh | 2014-11-28 10:30 | 2.5K | |
| QualityPssmMaker.hh | 2018-08-21 10:52 | 2.5K | |
| DiagonalTable.o8 | 2019-02-08 10:08 | 2.6K | |
| DiagonalTable.o | 2019-02-08 10:08 | 2.7K | |
| last-merge-batches.c | 2014-04-28 09:08 | 2.8K | |
| SegmentPairPot.hh | 2016-12-13 05:53 | 2.9K | |
| gaplessTwoQualityXdrop.hh | 2016-09-29 09:18 | 2.9K | |
| gaplessXdrop.hh | 2016-09-29 09:18 | 3.1K | |
| LastEvaluer.hh | 2017-10-24 10:38 | 3.3K | |
| gaplessPssmXdrop.cc | 2016-09-29 09:18 | 3.3K | |
| QualityPssmMaker.cc | 2018-08-21 10:52 | 3.4K | |
| TwoQualityScoreMatrix.hh | 2016-08-01 08:31 | 3.5K | |
| OneQualityScoreMatrix.hh | 2015-04-28 09:10 | 3.5K | |
| Alphabet.cc | 2018-02-26 00:00 | 3.5K | |
| LastalArguments.hh | 2018-05-07 01:54 | 3.5K | |
| gaplessXdrop.cc | 2016-09-29 09:18 | 3.5K | |
| GeneticCode.cc | 2014-11-28 10:30 | 3.8K | |
| OneQualityScoreMatrix.cc | 2016-07-20 00:24 | 3.9K | |
| GappedXdropAlignerPssm.o | 2019-02-08 10:07 | 4.0K | |
| GappedXdropAligner2qual.o | 2019-02-08 10:07 | 4.1K | |
| SegmentPairPot.cc | 2016-12-13 05:53 | 4.2K | |
| gaplessPssmXdrop.o | 2019-02-08 10:07 | 4.3K | |
| CyclicSubsetSeed.cc | 2017-11-08 09:32 | 4.4K | |
| last-pair-probs-main.cc | 2014-12-19 10:18 | 4.4K | |
| CyclicSubsetSeed.hh | 2016-03-11 07:47 | 4.4K | |
| gaplessXdrop.o | 2019-02-08 10:07 | 4.4K | |
| tantan.hh | 2015-01-30 10:22 | 4.6K | |
| MultiSequence.cc | 2018-08-29 01:25 | 4.7K | |
| SubsetMinimizerFinder.o | 2019-02-08 10:07 | 4.8K | |
| GappedXdropAlignerInl.hh | 2016-12-16 10:11 | 4.9K | |
| gaplessTwoQualityXdrop.cc | 2016-09-29 09:18 | 4.9K | |
| GappedXdropAligner3framePssm.cc | 2013-05-23 00:23 | 5.0K | |
| GappedXdropAlignerPssm.cc | 2016-12-16 10:11 | 5.0K | |
| last-merge-batches.o | 2019-02-08 10:08 | 5.1K | |
| SubsetSuffixArray.cc | 2018-10-30 12:22 | 5.2K | |
| QualityPssmMaker.o | 2019-02-08 10:07 | 5.2K | |
| gaplessTwoQualityXdrop.o | 2019-02-08 10:07 | 5.3K | |
| Centroid.hh | 2018-08-21 10:52 | 5.4K | |
| GreedyXdropAligner.cc | 2016-03-31 05:27 | 5.5K | |
| GappedXdropAligner2qual.cc | 2016-12-16 10:11 | 5.6K | |
| LastdbArguments.cc | 2018-10-30 12:22 | 5.7K | |
| MultiSequenceQual.cc | 2018-10-30 12:22 | 5.9K | |
| TwoQualityScoreMatrix.cc | 2016-08-01 08:31 | 6.0K | |
| Alignment.hh | 2018-01-05 10:24 | 6.4K | |
| TantanMasker.o | 2019-02-08 10:07 | 7.0K | |
| MultiSequence.hh | 2018-10-30 12:22 | 7.2K | |
| ScoreMatrix.cc | 2018-04-20 14:43 | 8.3K | |
| GreedyXdropAligner.o | 2019-02-08 10:07 | 8.3K | |
| LambdaCalculator.cc | 2015-10-07 09:30 | 8.8K | |
| SubsetSuffixArray.hh | 2018-02-13 08:13 | 9.0K | |
| GappedXdropAligner.hh | 2016-05-20 10:49 | 9.0K | |
| OneQualityScoreMatrix.o | 2019-02-08 10:07 | 9.1K | |
| GappedXdropAligner.cc | 2016-12-16 10:11 | 9.2K | |
| ScoreMatrixData.hh | 2015-09-18 09:28 | 9.8K | |
| SubsetSuffixArraySearch.cc | 2016-12-13 05:53 | 10K | |
| GappedXdropAligner3frame.cc | 2016-05-20 10:49 | 10K | |
| GappedXdropAligner.o | 2019-02-08 10:07 | 11K | |
| SubsetSuffixArraySearch.o | 2019-02-08 10:08 | 11K | |
| SubsetSuffixArraySearch.o8 | 2019-02-08 10:08 | 11K | |
| Alphabet.o | 2019-02-08 10:07 | 11K | |
| GappedXdropAligner3frame.o | 2019-02-08 10:07 | 11K | |
| fileMap.o | 2019-02-08 10:07 | 12K | |
| TwoQualityScoreMatrix.o | 2019-02-08 10:07 | 12K | |
| lastdb.cc | 2018-10-30 12:22 | 12K | |
| SubsetSuffixArraySort.cc | 2018-02-13 08:13 | 13K | |
| last-merge-batches | 2019-02-08 10:08 | 13K | |
| tantan.cc | 2018-12-26 07:28 | 14K | |
| LambdaCalculator.o | 2019-02-08 10:07 | 14K | |
| Alignment.cc | 2018-08-21 10:52 | 14K | |
| LastEvaluer.cc | 2017-10-24 10:38 | 15K | |
| makefile | 2018-04-20 14:43 | 15K | |
| GeneticCode.o | 2019-02-08 10:07 | 17K | |
| SegmentPairPot.o | 2019-02-08 10:08 | 17K | |
| AlignmentPot.o | 2019-02-08 10:08 | 18K | |
| AlignmentWrite.cc | 2018-01-05 10:24 | 18K | |
| SegmentPairPot.o8 | 2019-02-08 10:08 | 18K | |
| AlignmentPot.o8 | 2019-02-08 10:08 | 18K | |
| LastEvaluer.o | 2019-02-08 10:07 | 19K | |
| last-pair-probs.cc | 2018-09-10 11:14 | 20K | |
| LastalArguments.cc | 2018-10-30 12:22 | 22K | |
| tantan.o | 2019-02-08 10:07 | 24K | |
| Alignment.o | 2019-02-08 10:08 | 27K | |
| Alignment.o8 | 2019-02-08 10:08 | 27K | |
| Centroid.cc | 2018-08-21 10:52 | 27K | |
| AlignmentWrite.o | 2019-02-08 10:08 | 28K | |
| AlignmentWrite.o8 | 2019-02-08 10:08 | 28K | |
| last-pair-probs-main.o | 2019-02-08 10:08 | 34K | |
| Centroid.o | 2019-02-08 10:08 | 35K | |
| Centroid.o8 | 2019-02-08 10:08 | 35K | |
| SubsetSuffixArraySort.o | 2019-02-08 10:07 | 36K | |
| SubsetSuffixArraySort.o8 | 2019-02-08 10:08 | 36K | |
| MultiSequenceQual.o | 2019-02-08 10:07 | 41K | |
| MultiSequenceQual.o8 | 2019-02-08 10:08 | 41K | |
| MultiSequence.o8 | 2019-02-08 10:08 | 43K | |
| MultiSequence.o | 2019-02-08 10:07 | 43K | |
| lastal.cc | 2018-10-30 12:22 | 46K | |
| SubsetSuffixArray.o8 | 2019-02-08 10:08 | 49K | |
| SubsetSuffixArray.o | 2019-02-08 10:07 | 49K | |
| ScoreMatrix.o | 2019-02-08 10:07 | 52K | |
| CyclicSubsetSeed.o | 2019-02-08 10:07 | 53K | |
| LastdbArguments.o | 2019-02-08 10:07 | 61K | |
| last-pair-probs | 2019-02-08 10:08 | 87K | |
| last-pair-probs.o | 2019-02-08 10:08 | 91K | |
| LastalArguments.o | 2019-02-08 10:07 | 97K | |
| lastdb.o | 2019-02-08 10:07 | 104K | |
| lastdb.o8 | 2019-02-08 10:08 | 104K | |
| last-split | 2019-02-08 10:08 | 193K | |
| last-split8 | 2019-02-08 10:08 | 194K | |
| lastal.o | 2019-02-08 10:08 | 211K | |
| lastal.o8 | 2019-02-08 10:08 | 212K | |
| lastdb8 | 2019-02-08 10:08 | 251K | |
| lastdb | 2019-02-08 10:07 | 251K | |
| lastal | 2019-02-08 10:08 | 1.1M | |
| lastal8 | 2019-02-08 10:08 | 1.1M | |