463	134	64	173	chr1	10000	10468	248945954	+	(TAACCC)n	Simple_repeat		1	463	0	1	TAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCC+T+AACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAA-C-CCCTAACCCTAACCCTAACCCTAACCCTAA+C+CCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAA-C-CCCTAACCCTAACCCT-A-AACCCT-A-AACCCTAACCCTAACCCTAACCCTAACCCTAACCCC/TAACCCC/TAACCCC/TAACCCC/TAACCCC/TAACCCC/TAACCCTAA-C-CCCTAACCCTAACCCTAACCCT+A+ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAA-C-CCCTAA-C-CCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAA-C-CCCTAACCCTAACCCTAACCCTAACCCT
347	1210	556	138	chr1	10468	10954	248945468	-	TAR1	Satellite	telomeric	1206	1711	399	2	CGCGGTA/GCCCT/CCA-GCCG-GCCCGCCCGCCCGGGTCTGA/TC/GCTGAGGAGAACT/AG/CTGCTCCGCCTTCA/GG/CA/TGTACCA/CCCGAAA/GTCTGTGCAGAGGAC/GAACGCAGCTCCGCCCTCGCGG/ATGCTCTCCGGGTCTGTGCTGAGGAGAACGCAA/GCTCCGCCG/CTT/CGCAAAGGCG/A-CG-C/GCGCGCCGGCGCAGGCGCAGAGAGGCGCGCC/GGCGCCGGCGCAGGCGCAGAGAGGCGCGCC/GGCGCCGGCGCAGGCGCAGAGAGGCGCGCC/GGCGCCGGCGCAGGCGCAGAGAGGCGCGCC/GGCGCCGGCGCAGGCGCAGAGAGGCGCGCC/GGCGCCGGCGCAGGCGCAGAC/GAC/GA/GT/CGCT/GA/C-G-C/GGCGT/CCGGG/CGT/CG/A+GGCGCAGAGAGGCGC+GA/GGGCG+C+T/CGGCGCAGGCGCAGAGAGGCGCGCC/GGCGCCGGCGCAGGCGCAGAGAC/GA/GCA/GT/CGC/GT/AA/GCC/GG/CCG+G+T/CC/GCAGGG/CGT/C+AG+G/AGAGGCG+CGGGGCGC+T/CGGCGCAGGCGCAGAGAGGCGCA/GC/GC/GGCGCCGGCGCAGGCGCAGAGAC/GA/GCA/G
558	1031	611	431	chr1	10825	11463	248944959	-	TAR1	Satellite	telomeric	466	1114	996	2	GCG+C+T/CGGCGCAGGCGCAGAGAGGCGCGCCGCGCCGGCGCAGGCGCAGAGAC/GA/GCA/GT/CGC/GT/CA/GC-CGCGTCCAGGGGTGGAG-GC-G-T/CGGCGCAGGCGCAGAGAGGCGCA/GCCGCG/T+GTTGGGGAGG+C+G+CGGCGCA-G-GC/GGCAG/TAGACA/GCAT/CGCT/CA/GGCGCGTCC+CCGGAGGGG+AGGGGT+CGCTGGGCGGGCGGGAG+G/TGAGGCGT/CGGCGCAGGCGCAGAGACGCAA/CGCCT/GA/CC/TGGGCG/TGG/AGGT/GTGGG/CGGGGC-GT-GTGTTGCAGGA/CGCAA/CAGTCGCACGG/CCGCCGGGCT/GGGGG/A+G+C-GGG-GG/CGA/GGGGTGGCGCC/GGTGCAC/GGCGCAGAA/GACT/GCACGTCA/CCG/CG-TGGC-GCGGCGCAGAGACGGGTA/GGAACCTCAGTAATCC/TGAAAAGCCGGGA/TTCGA/GC/GCGCCCCT/CTGCTTGCAGCCGGGCACTACAGGACCCGCTTGCT/CCACGGTGCTGTGCCAGG/TGCGCCCCCTGCTGGCGACTAGGGCAACTGCAGGGCT/CCTCTTGCTTAG/CAGTGGTGGCCAGCGCCCCCTGCTGGCGCCGGGGCACTGCAGGGCCCTCTTGCTT/CACT/AGTATAGTGGT/CGGCACGCCGCCTGCTGGCAGCTAGGGACATTGCAGGGT/CCCTCTTGCTCAA/CG/AGTGTAGTGGCAGCACGCCCA/GCCTGCTGGCAGCTGGGGACACTGCCGGGCCCTCTTGCTC/GCA/CACA/TGTA/CC/GTGGCG/AG
64	2416	1782	250	chr1	11502	11676	248944746	-	L1MC4a_3end	LINE	L1	195	394	2235	3	A/GGTAG/AAC/TTCCTAA/GAT/AA/GTGGGATTC/GCTGGGTT/CT/AAAAA/GGTAAA-AAA-TA/GA/CATATGT-TT-AA/GTTTG/TT/GG/TA/TAC/GT/AG/T+ATTGCCAA+ATTA/C+CCCT+CCATC/AAGA/GA/GTTGTACT/CG/ATTC/TTGT/CA+T+TCCCACCAGCAATGTC/ATA/GG/AGAA/GTGCCTGTTTCT/CCCACA+GCCTCGCCAACA+A/GAG/ATG+TG+TT+GTCA+T/AACTTTTGG/AATTTTTGCCAG/ATCTA/GAC/TAGGTGAA/G
35	2913	192	95	chr1	11676	11780	248944642	-	MER5B	DNA	hAT-Charlie	1	105	73	4	G/CCCCT/CG/AGAGATTCTT/GATT+TA+AG/TTGA/GTT/CTGGGC/GTGGGGCCTGGC/GCATG/CT/AGT/GATTT-T-TTT/AAAAT/GT/CTCCA/CCT/AGA/GTGATTT/CTG/AC/ATGC/TA/GT/CG/AGCCG/AG/AT/GGTTGAGAAT/CG/CACTG
30	2471	353	0	chr1	15264	15349	248941073	-	MIR1_Amn	SINE	MIR	62	149	81	5	CCAC/TTG/TTACA+G+ATGG/AGGAAACT+GA+GGCC/ACAGAGAGGTG/TAG/AGC/TA/GG/ACTTGCCT/CG/AG/AGGTCACAG/CAGCAAGG/TCAA/GA/TA/GGCAGC/AGCTG/AGGT/AAC/TA
18	2318	0	196	chr1	15797	15849	248940573	+	(TGCTCC)n	Simple_repeat		1	51	0	6	TGCTCCTGCTCCTT/GCTG/CCTGCTG/CCTT/GCTCCA/TGCTT/CT/CC/TGCTCCTT/GC-A-TG/CCTGC
34	2959	2551	0	chr1	16361	16459	248939963	-	Charlie15a	DNA	hAT-Charlie	2	124	100	7	T/CTGGTTT/GAAT/GT/CA/GGGA/GA/GTGGGG/AA/GA/GCCCAGAGCCT/CCA/GCT/CT/CGT/CT/CCAGG/CCTCC/ACT+TCCCTCCCAG+CT/AGCCCT/CA/TGAA/GGT/C+ACCTCCG+G/TA/GGAAG/CT/CCC+T+AGA/GGCTCT/C+ACGGAAC+ACAGTTTGAAAACCACT
18	1369	0	0	chr1	16712	16744	248939678	+	(TGG)n	Simple_repeat		1	32	0	8	TGGG/TGGTGGTGGTGGG/TGGC/TGGTGGG/TGGTGGTG
21	3152	2174	0	chr1	18956	19048	248937374	+	L2a_3end	LINE	L2	84	195	322	9	C+C+TG/CCC/TTGCTGTTCCC/TCA/GG/AAT/CG/AT/CGCCAA/GGT/CG/ACA/GT/CTCT/CTGT/C+CTCAGGGCCTTT+GT/CG/ACTTGC+TGTTCC+A/CTCT+G+CA/CTGGAAC/TGCC/TA/CTTT/CCCCCAGAC/TATCCC/AT/CG/ATGGCTG/CG/ACTCC
233	3229	1177	168	chr1	19971	20727	248935695	+	L3	LINE	CR1	2680	3510	589	10	AGACTGGG/AGAG/TGGA/GCAAAG/TGC/TT/GGC/TTCT/C-GTCC-TG/AG/TT-GC-TC/TC/TC/AAC/AAAA/GGGAG/AAAG/AG/AGC/ATG+G+ATC/TA/CC/TT/GC/GAAAG/CTT/AG/CC/AGAA/CCAC/GC/TAAGCTC/TA/GAC/TAA/TTG/AAG/TCCCTGGA/CAAAT/ATTCTG/AGAATGGATTATTAAACAGAG/TA/GGTC/TTGTA/GAGCACTTAGAAAAGG/AC/AC/AGC/TGGTGAG/TT/CC/ACC/TAGGG/AGCCAGCAC/TT/GGC/GT+TCACTAAGAACAAGTCATG+CG/CAAAT/CG/TT/AACA/CG/TCATTTCT/CC/TTTTG/TTA/GAC/TAGGA/GTTAT/CTAGC/ACTGC/GTG/AT/GG/AC/TCC/AGGGGAAA/TA/GCA/TT/AG/TC/AA/GG/ACAC/TAGTGC/TATCTC/GGAG/TT+T+CAGCAG/AGA/GT/C+A+TTTGACG/A+AA+GC/TT/CTCTA/CAC/TA/GA+T+AA/TT/CCTTGTA/GGACAAGATGGAGC/AT/AATG/AG/TGGGT/CTGGAG/TGAG/TAGA/TACAT/GA/TTAGGA/TA/GA/GAA/TTCAG/TAG/ACC/TA/GA/GA/TTGAACC/AACA/TG/A+T+C/ACCCAAAG/AG/AGC/T-ACA-GTTGAA/TC/TAATGGAC/TTG/AATT/GC/TCAG/ACC-T-TGC/GAC/GGGAGGG/TA/CTCTG/AGC/T+GGTATGCCAC+AGA/GG+CTCTGTCCTTGGC+T/CCC/TA/GTCCA/TGTTCA+ACATTTTT+T/ATCAA+T+C/GACC/TTGGT/ATA/GG/AA+GACATAGAAGGCATGCTTATCA+AAA/TC/TTGG/CG/AGC/AC/TA/GG/ACACAC/AAG+CT+GGGAA/GGGG/AT-A-AGCT+AATA+G/TGTTT/GC/GATGAT/CC/AGAATCAAGG/AC/TTCAG/AAC/AA+G+ATT/CTTT/AAA/CAGGCC/TA/GGAG/A+T+G/AG/ATA/GGA/GCTG/AC/AAAT/CCAC/ACAAGATGAAATTTAC/AA/CAGGA/GAC/TAAATGTG/AAAGC/TCCA/TA/GCATTTAGGTTT/CT/AAAAAATCAAG/CC/TGT/CAT/CAAA/GTACAGA/GA-GG-TGGAGG/AG/AA/GAC/TT/CTGC/GT/CTTAG/AA/CC/AA/GCAGTTCAG/TGTGAA-G-AAAGACCTG/AGA/GA/GA/GC/TTTC/TT/AGTTA/GACTAT/CAAGCTCAG/ATAG/TGG/AGCT/CAAA/CAGC/TA/GTGT/ATA/G+T+A/GT/GCG/TGCA/CT/AAAAAAGG/CC/TAATGA/CG/AATCTTAGG
117	3244	1591	268	chr1	21949	22345	248934077	+	MLT1K	LTR	ERVL-MaLR	16	462	133	11	TG/TGTTTT+TG+CCTC/GT/CT/CCAGCAA/TCT/CATTT/CCCT/CT/CT-T-TA/CC/TTCA/TA/GGC/TAAT/CG/A+GCA+G/CCCC/TC/GATTTC/TCCTTG/TGGGA/GAT/ACCAT/CCT/CCTCT/CCG/CCAG/CG/TCTT/CAGTCCC/AA/TGA/TGC/GTTC/TA/GGGTGGGGCTGC/ACCA/CCA+CCCCT+G/CAGCTC+CAGGGGTGGGCATGTGA+CT/CCAGT/GCT/CA/TA/GGCCAAG/TT/CG/AGT/AGT/CG/ATC/TA/CT/CAG/TT/CCCCCTGGCCC/ACAT/GTA/GATG/TGA/GTTCT/AGGGATA/GGA/GCATGA/TGG/AA/CCCAAGCC/TA/GGGT/CG/C-G-G/AATGA+GA+GTG/CAG+TCC+TGT/GGG/ACTTC/TTGG/CA/TGGAAG/CTG/A+TT+GGGAC/A-AC-AGG/AA/GC/AAGCA/TT/CTCTTTCC-T-G/ACTGGA/GC/GC/TTG+CTAAGCTGGTAGGATGTA+AC/GCCTG+GAGCTG+T/CG/TT/GC/GA/TT/GGT/CCAC/TCTTGCT/CACCACGA/TGA/GGC/GAT/GG/AGCCTGT/CCTGG/AGAATGC/AAGCCAG/A-A-CC/ACAA/GAG+GA+AAGCAA/GA+G+CTG+AG+AC/GATGGAA/GG/AG-AAAGCA-AA/GACC/AA/GG/AG/TC/TCCTGAG/TGACATCATTTT/GAGCC/ACT/CTA/G
113	3071	415	0	chr1	23120	23361	248933061	-	MIR	SINE	MIR	7	257	5	12	G/TAGA/CTAG/ACATTTC/AC/TTGAA/GG/CG/ACTTC/ACTAG/TGTGCCAGGCACTGTTCC/TA+A+T/GTC/ACTTTG/ACATGTT/ATTG/AAT/CTA/CATTTAATA/CT/CTT/CAA/CAAT/CAAT/CT/CCTAC/TC/GAGGA/TAGC/GTACC/TATTATTAC/TCA/CCA/CAC/TTTC/TACAA/GATGAGA/GAC/AACC/TGAGGCT/AT/CAGAGG/AGGTTG/AG/AG+TAAC+TTGCCCAAGGTT/CACAG/CAGG/CA/TAGA/TAAA/GC/TA/GGG/CG/AGAGCT/C+A+GGATC/TTGAG/ACCA/CAGGCAT/G+TC+C/TA/GA/GCTCCAA/GG/AGT+CC+AA/TC/GCC/TCTC/TAG/AT/CCACTT/AC/TA/GCTG/A
51	2959	2356	94	chr1	23836	24010	248932412	+	L2b_3end	LINE	L2	58	270	196	13	C/TCACTC-CG-TGCTCCAGCCAT/CG/ACTGGCT/CTCCTTT/GT/CA/TGG/TTCCTCC/G+AACACGCCAGGCTCGCTCCC+A/GCCTCC/AA/GGGCT/CG/TTA/TGT/CT/ACATGT/C+TGTT+G/CCT/CTCTT/GT/CCTGGAATGT/CT/CCTTCCCA/CACCTA/C+TTCGCCTGGCTAACT+CCC/TACTCAA/TCCC/TTCAGA/GC/TT/CTT/CAC/GCA/TT/CAAATGTCAT/CT/CTCCTCA/CC/AGT/GC/AT/AGCCTTCCCTGACCT/CG/C+CC+AGA/GCC/TAA/GGC/TCAGGCT/GT/CC
56	2951	2825	44	chr1	24072	24249	248932173	+	MIR	SINE	MIR	34	259	3	14	C/TGGG/AGCCAT/GG/AA/CTC/GT/CA/CTGGC/GTTT/CG/AAATCCTGGCTCTGT/CCACT+TACTAGCTGTGTGACCT+A/TGGC/GCAG/AGTC/TT/ACTC/TAG/ACCC/TT/CTCTGTGCCTCAGTTTCCTCATCTA/GTAAAATGA/GG+G+ATG/AAC/TG/AG/AC/TAGTG/ACCTG/AC+C+TCATG/AA/GA/GGT+TGTTGTGAGGATTAA+G/ATGAGTTAATG/A+CATGTAAAG+C/TACTC/TAA/GAT/ACAA/GTGG/CT/CTG-T-G+CA+CAC/TG/AG+TAAGT+T/GT/CTA/CT/AATG/AAATA/GTTAGT/CG/TATT
36	3383	914	464	chr1	24261	24447	248931975	+	L2a_3end	LINE	L2	322	515	2	13	CA/CATAGA/CC/ACTTG/ATCACA/CA+T+CTGT/AT/CAT-TGAAGA-ACT+ATATATTTT+AA/CTC/TATC/TTATT+T+GC/TTTATT-TAG-GTCTT/GTCTCT/CCCT/C+C+G/ACC/TAGAATGTG/AC/AGCTCCAG/TGT/AGGA/GG/CAGGT/GATG/TTT+TGTCT+GC/TC/TTTA/GTC/TCG/AT/CG/TGCTGG/TATA/CT/CA/CT/CAGA/TG/AA/CT/CTC/AC/GC/AACAC/GTGCCTT/GGCACAC/TG/AA/GG/TC/AA/GC/GTG/ACTG/CG/AG/ATAAATATTTGTTGG/AC/ATGC/AAG/TGA
10	3025	588	1250	chr1	25891	25959	248930463	+	MIR	SINE	MIR	84	147	115	15	TGTGACCTTGA/GGT/CAAGTTG/AC+TTAA+CG/CTCTCTGA/TA/GT/CC-TGATCCTT-TCG/AA/GTTTCCC/TA/CT/ATCTC/GC/TAAAC/ATGA/GGA/GAC/T
18	2453	423	1385	chr1	26356	26427	248929995	+	MIR1_Amn	SINE	MIR	109	173	57	16	CTTA+ACC+TT/CTCTGTGCCTCAGTTC/TT/CCC/TCATA/CTGTAAG/AAT-CACAAA-GGGGG/ATAAA/TG/AATG/ACA/TA/G-GAT-AT/CT/CTCCTG/TTG
47	3575	2416	192	chr1	26573	26790	248929632	-	L2c_3end	LINE	L2	207	473	5	17	TTCT/AG/TTCT/AG/ACAAAC/TATC/TTAC/TTGAT/GCAT/CCTG/AT/CTAG/TGTGC+C+AGGC/TC/GA/CTGA/GT/GC/GAC/T-A-ACAAAGAC/TGAATAAGACAC/TT/AA/GC/TA/CCT/CA/TGC+CCT+CAG/AGGAG+CTCAC+AGTCTC/AA/G+TGGAGGAGA+A/CAA/GACAAC/GTAAACT/A+GACAATTA+CAAA/TT/AT/CAAA/GTTC/AATT/GC/AT+A+AC/GTC/GCA/TG/ATC/AATGGGT/AA/GC/TAA/TA+GACAGGGT+GCTAA/TGGA/GG/AT/GG/CACAA/G+AGGAGGGC+AT/CCC/TC/AT/GC/AT/CTG/AGAG/CTT-A-GGGGA/GGTCAGGA/GAAA/GA/GG/CC/TTCT/CTA/GGC/AA/GGA-A-T/GGTG+ACATTTGAGC+TGC/AC/GTCTC/T
291	875	38	0	chr1	26790	27053	248929369	+	AluSp	SINE	Alu	1	264	49	18	GGCCGGGCGCA/GGC/TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCG/CA/GAGGCA/GGGCA/GGATCACCTGAGGTCGGGAGTTCGAGACCAGT/CCTGACCAACATGGT/AGAAACT/CCCA/GTCTCTACTAAAAATACAAAA+A+TTAGCCA/GGGCGTGGTGGT/CGCATGCCTGTAATCCCC/AGCTACTCGGGAGGCTGAGGA/CAGGAGAATCA/GCTTGAACCA/CGGA/GAGGT/CGGAGGTTGCA/GGTGT/AGCCA/GAGATCGCGCCATG/TGCACTCCAGCCTA/GGGCAAC
47	3575	2416	192	chr1	27053	27220	248929202	-	L2c_3end	LINE	L2	6	206	272	17	G/AAGGG/ATGAA/G+TAGGAGTTAG+CCAGGT-CCA-GGAAGA/GAGGT/GGC/GA/GAAG-AC-AGCATTCCAGGT/CAA/GAA/GGA/GAACAGCT/ATGA/TA/GCAAAA/G+GCACGGAGGCAGGAAAGAACTGT+A/GGT/CGTGTA/TG/TGGGA/GAC/AC/TGCAAGC/TG/AGTC/TT/CT/AGA/TGTGC/GT/CG/TA/GGG/AGT/CAC/TAA/GTC/GA/GT/GCC/GT/AT/GG+A+GGGA/GAGTA/GC/G-T-AGA/GAGA+TGAGGC+A/TA/GGAA/GT/AGA/GTAAA/GCAGA/GGGCCAGT/ATT/CG/AT

58	1687	120	0	chr1	27268	27351	248929071	+	MER3	DNA	hAT-Charlie	34	117	92	19	GAAATC/G+T+C/TT/CTAG/TAC/TCTGTGCTGTCCAATATGGTAGCCACC/TAGG/CCACATGC/TA/GGCC/TAC/TTGAGCACTTGAAATGTGGA/CTAGTC/GTGAA/C
189	1544	1544	0	chr1	27281	27540	248928882	+	MER33	DNA	hAT-Charlie	1	299	25	19	CTGTGCTGTCCAATATGGTAGCCACC/TAGG/CCACATGC/TA/GGCC/TAC/TTGAGCACTTGAAATGTGGA/CTAGTCT/CG/AAATTGAGATGTGCC/TA/GTAAGTGTAAAATAT/CG/ACACC/TA/GA/GATTTC/TAAAGG/ACT+TAGTA+A/TGAAAAAAAGAATGTAAAATATCTT/CATTA+ATAAT+TTTTATATTGATTACG/ATGC/TTA/GAAATA/GAC/TC/AATATTTG/TGGATATAC/TTGGA/GTTT/AT/AA+T+AAAATATATC/TA+TTAAAA+C/TTAATTTCAT/CCTGTTTCTTTTTACTTTTA/TG/T+TAATGTGGCTACTAGAAAATTTA+AAATC/TACATATGTGA/GCTT/CAA/C

20	3593	619	674	chr1	27790	27984	248928438	-	MIR1_Amn	SINE	MIR	36	228	2	20	AATAATACCTA+G+CA/TCA/TTG/AT+G+TAGA/CACC/TA/TT-TCTGAC-TCC/ATCAA/G+T+G/AA/GATCTCA-TT-T/AAA/GCT/ACT-TA-TTAT/CC/AAG/AT/GGAA/GT/GT+CAG+TATC/TATC/TATC-C-CCT/CATTTTACA+GA+TA/GAGGAAAT/C+T+GG/AGG+C+T/AT/CAGAA/GAGA/GC/TC/TAAA/GTA/GAC-AT-TTT/GT/CT/CCAAC/GA/GTCAA/CAA/CC/AA/GCT/AAGC/TT/CT/AGA/TGA/GT/CC/AA/GAGCC/TC/AA/GGAC/ATT/AGG/AAT/CCT/C+AG+GTCG/TT/CCTGAA/GTT/CCCAA/GG/TC
24	3503	1429	173	chr1	27832	27986	248928436	-	MIRc	SINE	MIR	32	204	64	20	ATCTCATTTA/GAC/TT/CCTT/CAT/CT/AAT/C+AACC+CA/TGTGA+GGTAGGCAGGGC+AT/GT/GTATC/TATC/TATC-C-CCT/CATTTTAC+AG+ATA/GAGGAAAT/C+T+G+A+GGG/CTT/CAGAA/GAGA/GC/TC/TAAA/GTA/GAC-AT-TTT/GT/CT/CCAAC/GA/GTCAA/CAA/CC/AA/GCTAGC/TT/AT/AGA/TGA/GT/CC/AA/GAGCCC/AA/GGACTTGG/AAT/CCT/C+AG+GTCG/TTCT/CG/TA/GAT/CTCCAAGC/TT/CT/C
33	3356	333	265	chr1	28150	28300	248928122	-	MIRb	SINE	MIR	108	258	10	21	CTAA/CCAC/TTA/TAC/TC/T+G+AGCC/ACG/TTAG/CTG/ATGTGG/CT/CC/AA/GA/GCACTT/GTC/G+CTA+G/AT/GTACTTTA-G-T/CATA/GCATC/TAC/TCC/TCAA/TTTG/A-TTT-G/ATCT/CTCACC/AACAC/AA/CCT/CTT/AG/TGAGT/GTAGGTAG/TTAG/TTATCT/CA/C+C+T/ATTTTACAA/GATA/GAGA/GAAACC/TC/GAGGCA/TCAA/GAGG/AGGTTG/AAT/GTA
12	1574	417	638	chr1	29744	29792	248926630	+	(ACGCCC)n	Simple_repeat		1	47	0	22	ACC/GCCCA+C+GCCCACGCCCAG/CGG/CCC+A+CGCCCC/AT/CGCCC-T-C/AC-A-GCCC-T-ACGCC
200	2218	270	100	chr1	29900	30196	248926226	+	L1MB3_3end	LINE	L1	629	929	1	23	G/TAAGCCAGA/TCG/ACAAAAC/GT/GACAG/AATAT/CC/TGTATGAG/TTCCAG/CTTT/ATG/ATGAA/GGTG/ACCTAGAA/GTAGTCAA-A-ATTCAC/TAGAGACAGAA+AGTAGA+G/AC/TA/GGTGGTC/TGCCAGGA/GA/GT/CG/TGGGA/G-AG-C/GA/GAGGC/GGGA/GG/AT/ATGGGC/GAGC/TTC/AG/TTGTTC/TAATGGGTA+CA+GAGTTTCAGG/TC/TTGGGG/AT/AGATGG/AAAG/AG/AGTG/TCTGGAA/GATGA/GG/ATGGTA/GGTGATGGC/TG/TGCACAACAG/ATGTGAATC/GTACTTAATC/GCCACTGAACTGTAT/CG/ACTG/TAAAAATGGTTT/AAG/AAC/TGGTG/AAATTTTAG/TGTTATGTATG/ATTTTACCACAATTT/AT/AT/AAAA
129	1550	316	155	chr1	30342	30532	248925890	-	MER53	DNA	hAT	1	193	0	24	TAGGGTTGCCAGAT-T-AAAAG/TACAGGATG/ACCCAGC/TTA+A+G/ATTTGAATTTT/CAGATAAACAAC/TG/AAATAATTTC/TG/TTAGC/TATAAA/GTATGTCCCAA/TGCT/AT/AA/TG/ATTTGGGACATACTTATG/ACTAAAAA-AC-ATTATTG/CGTTGTTTATCTGAG/AATTCAG/AAA/TTTA+ACTG+A/GGCATT/CT/CTA/GTAT+T+TTTATTTGCTG/AC/AC/ATCTGGCC/AACCCTA
140	2905	1048	2630	chr1	30694	31133	248925289	+	MLT1A1	LTR	ERVL-MaLR	2	385	23	25	GT/CTG/ATA/GGA/TC/TA/TGAATGTTTA/GTGTCCT/CCTCCAAA+A+TG/TCT/ATA/GTGTTGAAAC-C-C/TTAAC/TCCCT/CAATGTGATG/AGTATG/TT/AG/AGAGA/GTGG+G+GCCTTTG/AGT/GAGGTA/GATTA-CGGTTAGATGA-GGTCATG+A+GGGT/CG/TG/CG/CGCCCTC+ATGAATGGGATTAGTGCCCTT+ATT/AAT/AAGA/GT/G+G+CTG/TGT/AA/GA/GGAA/G-AAG-A/TGAGC/TA/T-T-TG-TCTCTGTGTCTCCCTCTCTCTCTCTCT-C/G+CCCTTCTTGCCC+T-CTCTCTCTCATTTCTCTCTATCTCATT-TCTC/G-T-CTCTC/TT/CC/TGCT/CATC/GTC/G+AGGACAC+AT/GT/C-TTTCTCTCTCTCT-C/GTTT/CCTCT/CCCTCTG-TCTTTTCCCACCAAGT-GAGGATGCG/AA/GA/CG/AAG/CAAGGT/CG-G-CT/CG/ATCTG/TC/GA/GAAC/GCAGG/AA/GAGA/CG/AA/GGCCCTCACCG/AGG/AA/CACCC/AG/AT/ACCA/TGCTGC/GC/TA/GCCTTGAA/TCTTGGACTTCCA/CAGCCTCCAGAACTGTGAGG/AG/AATAAATG/TTA/CTG+TT+A/CTTTT/AA/TAAG/ATC/TG/ACCCAGTG/CTG/CT/AGGTATTTTGTTT/AT
50	2971	2806	40	chr1	31258	31435	248924987	+	MIRc	SINE	MIR	5	231	37	26	GCAGC/TC/GTGGC/TA/GCAGA/TGGG/AAAGC/AA/GCACA/TGGC/A+CTTGGAG+TCAG+GAAGACCTGGGTTCAAGTCCT+GGA/CTCTGCT/CAT/CTC/TAT/CTC/AT/GT/CTGTGTGACCC/TTGGGCAAGC/TCAT/CG/T+T+AA+CCTCT+T/CG/TGAGCT/CTCAGTC/TA/TCCC/TCATT/CTGTAA+AA+TGGG-A-T/GT/ATAATT/AG/ATG/ACT/CTGCCCTGCCTC/ACT/CTT/CT/AG/CAGGGC/TTGTA/TGA/TGAA/G+GATCAAATGAGATAA+A/TA/GG/TATGTC/GAAAGTA/GT/CTTTGTAAT/ACT
303	1544	0	0	chr1	31435	31733	248924689	+	AluJb	SINE	Alu	1	298	14	27	GGCT/CGGGCGT/CGGTGGCTCATGCCTGTAATCCT/CAGCACTTTGGT/GAGGCT/CGAC/GGCGA/GGAGGAC/TT/CGCTTGAGCCCAA/GGAGTTT/CGAGAT/CCAGCCTGGGCAAT/CATT/GGTGAG/AAT/CT/CCCA/GTCTCTACAAAAAT/AA/TAA/CAT/AAAAA/TTAGCCA/GGT/GCA/GTGGTGT/GCA/GCA/GC/TA/GCCTGTAGTCCCAGCTACA/TT/CGGGAGGCTGAGGC/TGGGAGGATCA/GCTTGAGCT/CTGGGAGA/GTC/TGAGGCTGCAGTGAGCT/CA/GTGATT/CGTA/GCCACTGCACTCCAGG/CCTGGGC/TGACAGAGA/TGAGACCCTGTCTCAG/AAAAAAAAAAAAAAA
50	2971	2806	40	chr1	31734	31752	248924670	+	MIRc	SINE	MIR	232	253	15	26	TAC/AT/AT/GTGT/CA/TAT+ACAA+C/ATGTAAG
79	2507	1194	274	chr1	32840	33041	248923381	+	MIR	SINE	MIR	2	220	42	28	CAGG/TAG/TAGCATAGTGGTTA-CTAGG-AA/GG/AGG/CAA/TGGACTT/CTGGG/AA/GCT/CAGACTGCCTC/GGGC/TTG/CG/AAG/ATCCTC/GT/GT/CTCTGC+CAC+TTC/AA/CTAGCC/TA/GC/TGTGAT/CCC/TTA/GGGCAT/AGTTAC+TTAACCTCT+CTGTGCCTCAGTTTT/CCA/TC+A+TCTGTC/AAA-T-AT+GGGG+G/ATAATAAC/TT/AGA/TAT/CCTG/AT/CCT+CATAGGG+TTGTG/TGTGAGGATTC/AAG/ATGAGTTAAC/TAT/CATT/GTG/AAAGTG/ACTTAA/GAAA/CT/AGA/T
318	1829	488	0	chr1	33046	33456	248922966	+	L1MB5_3end	LINE	L1	492	921	0	29	G/ATGTCCATA/CG/AAT/CTA/GATGAG/ATGA/GATAC/AACAAAT/AG/TGTGA/GTATG/AG/TA/CCATACAG/ATGGAG/ATATTA+TTCA+GT/CCATAAAAAGGAAG/TGC/AAGA/TG/ACTGATC/ACATGG/CC/TACC/AAT/CG/ATGA/GC/AA/TGAACCTC/TA/GAAAG/ACATTAG/TGT/CTAAGTGG/AAAGAAGCCAGACACA+AAA+GGTCACC/ATATTGTG/ATA/GATTCCATTTATAG/TGAAATATA/CCAGAATAT/GGTAAATCCG/ATG/AGAGAA/CAGAAAGCC/AGAT+TAGTGGT+TT/GCCAGGGGCTA/GA/GGGGGAGGGGA/GGAATGGGA/GAGTGG/ACTGCTTC/AATGGGTAC/TA/GA/GGGTTTCA/CTTTTGA/GGC/GTGATGAAAATGTTTTGGAACTAC/GATAGAGA/GTA/GGTGT/GTG/TGCACAACATG/TGTGAATGTACTG/AAATGCCACTGA+A+TTGTT/ACAA/CTTTAAAATGGTC/TAAA/TC/TTT+ATGTT+ATA/GTGAATTTC/TACCTCC/AATTA/TAAAAAA
16	2500	0	0	chr1	33468	33508	248922914	+	FLAM_C	SINE	Alu	4	43	100	30	CA/GGA/GT/CGT/CGGTT/GGCTCACA/GCCC/TA/GTAATCCCAA/GCACTTTGGA/G
584	937	18	216	chr1	33530	34097	248922325	-	L1PA6_3end	LINE	L1	343	898	3	31	TTTTTTTTTTT/AA/TTATAC+T+TTAAGTTCTAGGGTACATGTGCAT/CAAT/CGTGCAGGTTG/TGA/TTACATAGA/GTATG/ACG/ATGTGCCATGTTGGTTTGCTGCACCCATCAACTT/CGTCATTTACATTAGGTATTTCTT/CCTAATGCTATCCCTCCCCCAGCCCCCCACCCA/CC/AT/CGACAGGCCCCA/GGTGTA/GTGATGTTCT/CCT/CGCCCC/TA/GTGTCCAAGC/TGTTCTCATTGTTCAATTCCCACCTG/ATGAGTGAGAACATGCA/GGTGTTTGGTTTTCTGTCT/CTTGTGATAGTTTGCTC/GAGAATGATGGTTTCCAGCTTCATCCATGTCCCTGCAAAGGACATGAACTCATCCTTTTTA/TATGGCTGCATAGTATC/TCCATGGTA/GTATATGTGCCACATTC/TTCTTAATCCAGTCTG/ATCATTGATGGACATTTGGGTTGGTTCA/CAAGTCTTTGCTATTGTGAATAC/GTGCCA/GCAATAAACATACA/GTGTGCATGTGTCTTTATAGTAGCAC/TGATTTATAATCCTTTGGGTATATACCC-TA-AGA/TC/AC/ATGGGAC/T-GCATTTAAAG-CA/GG/CTGT/GGTA/CAAG/AA/TGA/GC/TATTTA/CTAGC/TA/TCTAA/GATG/C
47	3960	43	1080	chr1	34114	34349	248922073	-	MLT1J	LTR	ERVL-MaLR	116	328	184	32	CCTG/CAGA/CAC/TGTGGG/CTTT/CCA-G-CCTA/CAG/TA/GGTT/C-G-T/CAAT/GATGT/GG/CTGCC/TCA/GT/A+G+T/CC/TA/CCAGG/CT/CG/AC/TT/CG/ACATCA/TG/AA/CG/ATC/TCCAGG/CT/CG/AGG/CAA/GGAAGG-CAAGCATACAC-AA/GA/GAAT/GGGT/GAAAAG-GCAGAAAG-G/AAGC/GC/GCAG/TT/GCT/CCG/CT/CTCT/CT/CTTTAAGA/GAG/CT/AT/CTTCCT/CA-A-GAAT/GC/TTC/GCACC/ACAG/AC-G-ACTTG/CC/TT/GCTC/TACATCTT/CC/ATTGGCCAGC/AACTG/TG/AA/GC/TCACAC/TA/GA/GCT/CC/ACT/AT/CCTAGA/CTA/GCAG/AA/GGGAGT/GCC/T
35	3333	68	876	chr1	34414	34562	248921860	-	L2c_3end	LINE	L2	138	274	204	33	GA/GCACCTAA/GC/ACC/TT/AT/GG/AG/CTG/TGA/GGGGG-TTGTGGTGC-TG/CG/AGA/GGAAGGCTTT/CCTGGAC/GGG/AT/GGTGACAG/TC/TA/TGAGA/CTA/G+A+A/GA/TCTTA/GAAGGC/AC/TA/GAGTAGGAGTTAC/GCCT/AGGTGA/GA-GCA-G/AGGC/AA/GGGGT/GT/GAC/AA/GAGCATTCCAGC/GA/CAC/GAT/GGA/GAG/ACAGCAG/TG
168	2845	1405	24	chr1	34564	34934	248921488	-	MLT1J2	LTR	ERVL-MaLR	28	448	0	34	TGTT/ATTAA/GTT/CAA/GA/GA/GG/TAA/GGG/CC/TAG/AT/CTGCTGTAACC/AAACT/AAT/CA/CA/CA/CCAAAT+CTC+AA/GA/TGGCTT-A-AACACAATG/AG/AAAGTTTATTTCTCACTA/CAG/TGG/TA/CACA+G+TCCAAA/T+G+TC/GC/GA/GTGA/G+TTCTGGGGGGTGGGTGGCTCTGCTCCA+TA/GCT/AT/GTA/CAG/TTCAGGGACCCAGGT/CTCCTC/TCCATC+T+TA/GTGGT/CTCTGCCATCA/CCT/CA/TA+GGGCC+TCT/AGG/AGTCT/CTCCACA/TA/GT/G+A+TG/CC+TCTG+CG/ATG/CCT/AC/GCT/CT/AGG/CAGG/ATGGGA/G+AA+AG+AGAG+AGC/AA/GG/CG/AC/TGGAGGA+T+CACG/ATGGGAGGTTT+T+TA+T+GGGA/CCAA/GGCCTGGAG/AGC/TA/GGCATG/ACG/ATCACTC/TCC/TA/GT/CG/TCAG/CAG/TTCCATTGGCCAA/GT/AG/ACTG/CG/AC/GTCC/AG/CATGGCCACAT/CCTC/AACTGCAG/AGGGC/AA/GGCTGGGAAATA/GC/TAGTCTG/AGCTGTC/GTA/GCCCAGGAGGAAG/AAGC/GAG/AC/AC/TA/GGT/GTTC/TTG
13	3157	410	2212	chr1	34836	34958	248921464	-	MLT1N2	LTR	ERVL-MaLR	68	171	391	34	ATTGGCC/AA/GAT/GG/CCTG/AGC/GTCC/AG/CATGG/CCC/TA/GC/TA/GT/CCT/CC/T+A+A/GCTGCAG/AGGGC/AA/GGCTGGGAAAT/GA/TC/GAG+TT+TCTGGCT-G-TCTACCC/TA/TGG-A-GGAA/GG-AGCAGC-C+A+A/G-GTTTCT-G+A+C-TGCTGATGA-TCAG/TG/AAGGTGGA/GGA
38	3238	1192	181	chr1	35215	35366	248921056	-	MIRc	SINE	MIR	91	256	12	35	T/CCCTA/TACAA/TG/TTGTT/ATAGA/CG/ACTTA/TAT/CC/AGTG/TTT/ACAAAA/GT/CAC+TTTC+AT/CATACAA/TTG/A+TCTCA+TTTA/GATA/CCTT/CACAAG/CAAT/CT/CT/CG/TGTGG/AGG+TAGGCAGGG+A/CAA/GA/GTATTAC/TC/TATC-TT-T/CCCC/ATTTTG/AT/CG/AA/GT/AT-G-GAGA/GAAAA/CTGAGGCTT/CT/AGAA/GG/AGGTTT/AAA/GG/TA/GACTTGCCCAAGGTC
134	1353	0	0	chr1	35366	35499	248920923	+	AluJr	SINE	Alu	1	133	179	36	GGCCA/GGGT/CGCA/GGTGGCTCAT/CGT/CCTA/GTAATCCCAA/GCACTTTGGGAGGCT/CGAGGT/CGGGAGGATC/TGCTTGAGGCCAGGAGTTCA/GAGACCAGCCTGA/GGCAACATAGTGAGACT/CT/CT/CGTCTCTAT/CAAAAAATAA/TAT/AAAA
259	1914	362	282	chr1	37044	37431	248918991	+	Charlie5	DNA	hAT-Charlie	2234	2623	1	37	TGATACTC/TC/GAC/TC/TCAGTTAC/TC/TA/GGAAAACA/TTTTAG/AGTATGTG/TTGA/GG/AACAACTTGGGTATGTGAAC/TCTACC/TTTTTCAA+C+TGTAAATTC/TA/TG/ATGAAATCTAAG/ATG/ACAGATCC/AC/AA/GTATTTCC/TA/GATA/GAAAAG/TG/TTAA/GCATCC/TAAAC/TTC/GAGATGTC/GCTA/GTG/AAGTA/GTAAAATACACAA/C+T+A/GGATC/TTTC/AT/AG/AGACTTAGTATGAAAAG/AG/A+A+G+A+A-TTTTTTTTT-TGTC/AAG/AG/ATAC/TCTCAC/TTAG/ATT/AATTTTTAA/TAA/TT-AG-GATTG/ACATGTTGAAATGATAATC/ATTTTGGATATATTGGGTTAAATAAA+A+TT/ATATTATTAAAG/ATTAATTTCACT/CT+GTTTCTTTT+A/TAA/CA/TA/TTG/TTTTAATGTA/GGCTACTAGAAAT/ATTTAAAATTAA/CG/AC/TATGTT/GGCTCACC/ATTATG/ATTTCTATTGGACG/AGCT/ACT
21	3455	79	1043	chr1	37734	37860	248918562	+	L2c_3end	LINE	L2	363	477	1	38	TCA/TCCA/TCCACTG/AGG/AC+T+A/GC/TA/GAGCTT/CCTC/TC/GAGC/GA/GCAGC/GA/GACTG/ATGTCTTATTT/CC/ATCC/TTTGTAC/TT/CCCCAGT/CG/A-TTCACA-C-CATG-CTG-C-A/GCT/ACAC/TAGA/TAGA/GC/TT/GCTT/CC/AG/ATT/AG/AATATT-T-TGTG/TGAC/AA/TGAG/AA/TGAA
66	2086	1635	54	chr1	38070	38229	248918193	+	L2	LINE	L2	2717	2900	182	39	TT+A+T/CG/TA/GCAG/AG/TAGCCTCCTAACTGC/GTCTT/CC+C+TGCTTCCAT/CT/CT/CTTGCCCC+CC+TT/ACAGTCTATTCTCAACAG/CG/AGA/CAGCCAGAGG/TC/GATCCTT+TTA+AAC/AC/TAT+AA+GTCAGATCATGTG/CG/ACTCCTCA/TGCTCAAAG/ACCT/C+TCCAATGGCTTCC+CATCTC+ACTC+AGAGG/TAAAG/AC/GT/CCT/AG/AG/AT/GC/TCCTTA-G-A/CAATGGCC
706	2422	1397	116	chr1	38238	39462	248916960	+	MLT1F-int	LTR	ERVL-MaLR	109	1487	2	40	A/TC/TAGAC/GAG/AAC/GT/CCTAAG/AG/T+TGCCT+TGAG/ACAGACTGTTG/AC/GTAGAT/AATCTGGG/ACTC/TG/TGAGGAC/GT/GC+T+GCC/TA/GC/GTG+AGGG+CTC/TAAAG+G+GC/AAGTGAGGAT/AT/AT/ATC/GG/TC/TAC/TTA/GGAAG/ACTGGAGGAC/AAGGG+G+ATCCTTGTTAG/TGTAGG/TA/GGCAGAAAGC/TTTAGA/CAAAG/ATG/TGTCTCCTGCAGTTAC/TGTGGC/AAAA/GC/TAC/GAT/AC/AATGTAA/CG/CTG/AATA/GAAT/CTG/TGGT+G+ATG/CC/TAGT/CTG/AAGGAGATTTCCAAGT/CAAAA/GTGTTGAG/AGA/GTGCTGCCTGGTTTCTTCTTA/GCTGCTTATAA/GTAT/AAG/ATGTGAGAGA/GAGAGAGATAAATTGAGA/GA/GAG/AA/GG/AACTG-GTTT-TTAAA-CTGT-T/CAAAAT/AT/GGAAT/CCAGGACTTGATGA/GTTTTGAAAATTG/CTCAGT/CCTCC/TCCAC/GATGGA/CAAAAGATGCTG/AAAATTAAC/GAAATGGCTTCTGAGCA+AAGATCAAATCCAGGGCACTGTCAGGAAAA+T/CG/AT+GGTCTAAAGATGA+G/AGCA/CT/AAGGGTGTA/GACTGTAC/AAG/ATCT/CTTTGTG/TAT/AT/GAT/C+C+G/TCAT/GAAAGATCAAAGG+TGGTGC+A/CTG/CG/AGAGTAG/CC/TAA/TTG/CAGTCACACAG/AAG/AGT/GCTG/CTTG/TC/AAAGAGATT-AC-AAGGGTGTA/GCCA/TT/CG/ACAGAA/TCCTCTCC/AAC/TCAAACC/AT/ATAGGGCC/TC/TT/CTG/AG/AGAAGCTTC/AAGT/GGA/CG/ATTA/GC/TCCT/C-G-G/TG/CG/AGCCATCTT/CG/AGCAGG/AAGCT/CG/CAAGGTAGAA/GA-GGT-AGA/GGT/CTTATCTCT/GAAA/GAGATTC/TA/GTGGGTA/GTGGCTC/TTTGA/TCA/TAATC/GGA-CT-A/GTGAG/AC/TCCCAC/AC/TGAA/GAC/TC/TCACAGA/GG/AGACA/CG/CG/ACAAAGG/TG/TTTTG/AG/AGAAAG/AC/TTG/ATT/ATCAC/GCC/AA/GC/AAG/AT/CG/ACTGG/CCAGA/CTTGGT/ACTGT/AAG/AGGGACAGA+GACA+GTG/ACAAAATGAAAG/AA/GAGA/GCTG/TTC/TA/GGAG/CA/CCCCC/AAAAC/TTCTG/ACT/AGT/GCAA/GGAAGA/CAGGCTGATAAAACTACTT/CG/AGCTGCAAACAC/TGTG+C+G/TAT/CCTTTCG/ATGAG/AAAAA/GGAAGGATGACC/TCAGAGG+GCAGAAC+CAG/AA/GAGCCCAGAA/GGGC/TAGAGCCAAGAGA/CCATG/AGAA/G+AAT+TC/ATTCCCAC/GA/GT/CCTTA/GAAACCTG/AT/ATT/CAG/AGGAAC+T+A/TCCAG/ACATC/TTGT/CCCAGCTGGATTTCAGAAC/TC/TA/GCC/T+ATGGACCAGTG+AT/CTCCTTC/TA/GTC/GCT/CTC/TCCC/ATG/TC/TTG/CCCT/CCTTTC/TTGAAC/TAGC/GAATGTCTC/AA/TA+GCTGTTATCCTAT+GCT/CTT/GA/TCCCACCATTGTG/ATGTTGC/GA/GTA/GTGTA/TGGGGGCAGATAG/ACTTGTA/CTCTTTAGTTTT/CC/ACAGA/GTC+TACAGATGG+AGAGGAAC/TA/T+GTA+T/CC/TCA+AGGAGCTGTACTTAAGGAATTACACCC+AAGA/GAA/GT/CCTG/CT/ATCT/CACACCTA/GA/GACCC/TGATTTAGATG+ATG+AGATTC/TG/TGGACTG/TTGAGC+TGATGCTGTAATGGG+ATGA+GACTTTT+A/GGGGATCTC/TA/GA/GGAGGGG+GG+TGAA/GTGTG/ATTTTGCATGC/TA/GC/GA/GAGGGAC/TAG/TGAG/ATC+A+TT+G+GGGGA/CCAGAGGA/GCAG
198	2926	1090	747	chr1	39464	39623	248916799	+	MLT1F2	LTR	ERVL-MaLR	1	174	386	40	TGTGGT+A+GGCAGA/CT/CA/TCTAAGG/ATGA/GCCCCCA+A+C/TA/GAC/TCCCC/TA/GCCTC+C+TGC/GC/TATTCAC/TA/GCCCTTGA/TA/GTAATCCCCTT/CCT/CCT+T+GG/AT/GTGTA/GA/GGCA/TGA/GACCT+A+GTGG/ACTTGCTTA/CTG/AA+CGAAT+AGG/AAG/TG/AC/TGGT/CAT/AAT/A+GTG+ATGT/GGAT+G+TCAT/CG/TTA/C+T+C/GT/AGATC/TAT/GA/GTTG/AT/CAT/AAAG/AA/GT/ACA/TC/GT
322	1200	0	0	chr1	39623	39923	248916499	+	AluSx	SINE	Alu	1	300	12	41	GGCT/CGGA/GT/CGCA/GGTGGCTCG/AT/CGCCTGTAATCCCAA/GCACTTTGGGAGGCT/CGAGGCGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGG/CCTGGCCAACATGGC/TA/GAAACCCCGC/TCTCTACTAAAAATACAAAAATTAGCCA/GGGCA/GTA/GGTGGT/CGCA/GC/TGCCTGTAATCA/CCAGCTACTCA/GA/GGAGGCTGAA/GGCAGGAGAATT/CGCTTGAACT/CCA/GGGAGGT/CGGAGGTG/TGCAGTGAGCCA/GAGATCGT/CGCCACTGCACTCCAGCCTC/GA/GGT/CGACAGAGCGAGACTCT/CGTCTCAAAAAAT/AAAAT/AAAAT/AAAA
198	2926	1090	747	chr1	39925	40297	248916125	+	MLT1F2	LTR	ERVL-MaLR	175	548	12	40	G/AT/CTA/TA/CG/CA/GTCA/TTA/G+CGCG+A/CC/TCTG/CTCTTT/GCT-GGGGA-CTCTCT/GCTTGA/CC/TG/CC/GCTT/CTGAA/TG+G+AAGCA/CG/AGCTGCCATGTTGC/TA/GAGCTGCCT/CC/TATGGAGG/AGGA/CT/CCAG/CC/GT+G+GCG/AAGGAG/ACTA/GAGA/GGC/TC/GC/GCCTCCA/GG-TCGATGCTCACCAGGAAGCTGAGGTCTTGTGT-CCAG/ACAC/GCCT/AGCAT/AA/GGAACTGAA/GTG/CCTGCCA+ACAACCACGTG+T/AGTGAGCTTGGAAGC/TA/GGAG/TCCA/TTC-CA-CA/CCAGC/TTGAGCCC/TT+G+AGATGA-GA-A/CC/TC/GCAGT/CG/CCTGGCTGACACCC/TTGATG/TGCAC/GCT/CT+T+A/G+TGAGAGACCCTGAGC+CAGAGG+C+AC+C+CAGT/CTAG/AGCTGTGCC+CA+A/GAC/TTCCTGACCT/CG/ACAGAAG/ACTGG/TGG/AA/GAC/TAC/A+TAAA+TGG/TG/TTC/GG/TTA/GTTTG/TC/AAGCTG/ACTG/AG/AA/GTTT+T+GT/GGGG/TAATTTGTC/TAC/TACAGCAATT/AGG/A
111	3211	1184	221	chr1	61517	61860	248894562	-	L1ME4c_3end	LINE	L1	226	603	227	66	TTTCCA-T-TGTTA/GT/CTAT/CAA/TAT/GG/TCTTC-T-ATT/AG/AA/TTATT/CT/AA/TTTTTAATA/GA/GCTGT/C-T-ATT/AAC/TAG/TTCCG/ATC/TAT/AGTA/TC/GATA/GC/TACT/CATA+ATTTA+CTTAAA/C+CATTCC+CCTAA/TTGTTT/GGG/AT/CATTTAA/GA/GTC/TGTTTCA/CAG/AA/TTTT+T+TA/GT/CC/TAC/TTG/ATC/AAAC/TAAA/TG+C+TA/GT/CG/AATGAAT/CATT/CTTTA/GTGCT/AG/TAA/TAA/GCTT+TTTCCTT+CTG/T+TTGAATTATTTCC+TA/TAA/GA/GATAG/AAA/TTT/CCCAA/GG/AAGT+GGA+ATTAT/CTGC/GA/GC/TCAAAA/GGGC/TATGG/AAC+ATTT+TTAA/TA/GA/GT/CTCTTGATACATG/AA/TTT/GT/CCAAAA/TTA/GT/CTTTCT/CT/AT/AAAGGT/GTTGA/TAT/CCAG/ATC/TTAT/CATTC/GCCT/ACCAGCAG/AC/TGTATA/GAA/GAGTG/ACCAA/GTTTCT/ACT/CG/AA/CT/AC/TCT/CTA/TGCCAGT/C+A+TTGGGTAA/TTAA/TT/CAATTG/TT-AAA
111	3211	1184	221	chr1	62160	62230	248894192	-	L1ME4c_3end	LINE	L1	151	225	605	66	-TGT-A/TA/TAAC/ATTTTTC/GCTAATTTAAC/TAGA/GA/TAA/TAT/AAATA/GGTATT/CA/TT/CAT+TGTTGT+TTTA+AT+TC/TA/GT/CATTTCTTTGATTT/ACTAA/G
149	2594	169	526	chr1	80711	80801	248875621	+	Tigger5b	DNA	TcMar-Tigger	1	86	386	88	CAA/GAC/TT/GGTT/CT/CCCA/GAG/CTTAC/TA/GATGGTTCA/GAC+TTAC+C/GATTTTTC/TAG/ACTTTAT/CGG/ATGGTGTGAAAGTGATAT/CC/GCATTCAT/GTAGAAACCA/G-TGCTCCAG
39	2847	417	2195	chr1	2026506	2026553	246929869	+	MER102b	DNA	hAT-Charlie	75	115	226	2881	TTAAAG/AATG/T+TTT+GAATTAGTTC/GA/CT/CG/AACAC/TTTAAAA-A-ATCAGG-AGGCATGT
342	689	33	0	chr1	2026553	2026858	246929564	+	AluY	SINE	Alu	1	306	5	2882	GGCCGGA/GT/CGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGT/CGGGT/CGGATCACGAGGTCAA/GGAGATCGAGACCATCCTGGCC/TAACAT/CGGTGAAACCCCGTCTCTACTAAAAATACAAAAG/AATTC/AGCT/CGGGCGTGGTGGT/CGGGG/CGCCTGTAGTCCCAGCTACTCA/GA/GGAGGCTGAGGCAGGAGAATGGT/CGTGAACCCGGGAGGCA/GGAGCTTGCAGTGAGCCGAGATT/CGCGCCACTGCACTCCAGCCTGGG+C+GACT/AGAGCGAGACTCCA/GTCTCAAAAAAAAAAAAC/AAAAC/AAAAAAAAA

39	2847	417	2195	chr1	2026861	2026872	246929550	+	MER102b	DNA	hAT-Charlie	116	116	225	2881	-ATCAGGAGGCA
271	1607	33	338	chr1	2026872	2027177	246929245	+	AluJb	SINE	Alu	2	297	15	2883	GCCGGGT/CGCA/GGTGGCTCAC/TGCT/CTGTAAC/TCCCAA/GCACTT-T-TT/GGGAGGCT/CGAGGT/CGA/GGAGT/GAT+C+A/GCTTGAGCCT/CG/AGGAGTTT/CGAGACCAGCCTGGGCAACATA/GGG/TGAG/AAT/CCCT/CGC/TCTCTACAAAAAT/AA/TAT/CAAAAA-ACA-TTAGCT/CGGGCT/GTGGTGGT/CGT/CGC/TA/GCCTGTG/AGTCT/CCAGCTACTCGGGAGGCTGAGGTGGGAGGATT/CA/GC-CCACC-TC/TA/GAGCCC/T-C-GGGG/AGGTTGAGGCTGT/CAGTGAGT/CCA/GA/TGATT/CGC/TA/GCCACTGCACTCCAGCT/CTGGGTGACAGAGTGAGACCCTGTCTCAT/AAAAC/AAAAC/AAAAAA
39	2847	417	2195	chr1	2027179	2027263	246929159	+	MER102b	DNA	hAT-Charlie	116	197	144	2881	-TCGGG-AT/GATTTT/CACATAG/AG/AAATT/CT/CAA/GATA/TTT/CT/CG/AA/GCC/TTCTCC/TTA/GG/AAAAATCAA/GG/AT/AG+A+C/TG/CTGGCAACT/ACTGGGCCT/C+AC+ATTCCCGT/CG/ATG

378	904	0	0	chr1	72187	72530	248883892	-	L1PA7_3end	LINE	L1	547	889	12	79	TT/ATA/TATACTTTAAGTTCTGGGATACATGTGCAGAAT/CGTA/GCAGGTTTGTTACAC/TAGGTATACACC/GTGCCATGGTT/GGTTTGCTGCACCCATCAACT/CCA/GC/TCATCTACATTAGGTATTTCTCCTAAC/TGT/CTATCCCTCT/CCCTT/AGCCT/CCCCACCT/CCCCGACAGGCCCT/CG/AGTGTGTGATA/GTTCCCT/CTCCCTGTGC/TCCATA/GTGTTCTCATTGG/TTCAACTCCCAT/CTTATGAGTGAGAACATGCGGTGTTTGGTTTTCTGTTCT/CTGTGTTAGTTTGCG/TGAGAATGATGGTTTCCAGCTTCATCCATGTCCCTGCAAAGGACATGAACTCATT/CCTTTTTTATGGCTGCAA/TG/AA/GA/TA
425	637	265	0	chr1	72530	72897	248883525	+	L1PA7_3end	LINE	L1	166	536	365	79	TGCAAATCAAAACCACAATGAGATG/ACCATCTCACA/GCCAGTTAGAATGGCA/GATCATTAAAAAGTCAGGAAACAAT/CAGATGCTGGAGAGGATGTGGAGAAATAGGAATGCTTTTACACTGTTGGTGGGAGC/TGTAC/AATTAGTTCAACCATTGTGGAAGACAGTGTGGT/CGT/ATTCCTCAAGGATCTAA/GAACT/CAGAAATACCATTTGACCCAGCAATCCCATTACTGGGTATATACCCAAAC/GGATTG/ATAAG/ATCATTCTACTAC/TAAAGACACATGCACAG/CGTATGTTTATTGCAGCACTA/GTTCACAATAGG/CG/AAAGACTTGGAACCAACCCAAATGCCCG/ATCAATGT/ATAGACTA/GGATAA+AGAA+AATGTGGCACATAG/TAC

103	2051	0	986	chr1	147060	147161	248809261	-	AluJr	SINE	Alu	70	166	146	204	A/GGACTAT/CAC/GA/GCAG/CGCA/GCCACCACA/GT/CT/CT/CGGCTAATTTTTAA/TATA/TTTC/TTGTAGAGACA/GA/GGGTCTT/CG/ACTAG/TGTTGCCCAGGCTA/GGTCTA/CA/GAACTCCTGGC-ATCA
264	1402	221	36	chr1	147161	147432	248808990	+	AluSx	SINE	Alu	1	276	36	205	GGCT/CGGGCA/GT/CGGTGGCTCAT/CGCT/CTGTAATCG/CCAGCACTTTGGGAA/GGCT/CA/GAGGCA/GGGC/TA/GA/GATCACCTGAA/GGTCT/AGGAGTTCGAGACCAGCCTGGCCAACAC/TGGTGAAACT/CCT/CGA/TCTCTAT/CC/TAAAAATACAAAAATC/TAGCT/CGGGC-A-GTA/GGTGGCGT/CGTGCCTGTAG/ATCT/CCAC/GCTACTCGGGAGGCTGAGGCAGGAGAATCA/GCTTGAACCT/CGGGAGGT/CGGAGGTTGCAGTG+AGCCGA+GAC/TCC/GCA/GT/CCACTGCACTCCAC/GCCTGGGT/CGACAGAGCGAGACTG/C
36	494	0	0	chr1	147433	147475	248808947	+	(CAA)n	Simple_repeat		1	42	0	206	CAACAACAACAACAACAACAAA/CAACAAA/CAACAACAACAACAA
103	2051	0	986	chr1	147480	147535	248808887	-	AluJr	SINE	Alu	25	69	146	204	-NACTCCTGGC-A/CTCAAGA/CC/AATCT/CTCCT/CGT/CCTT/CA/GGCCTCCCAAAGC/TC/GCTGGGATTAT/C

48	2142	305	2162	chr1	19802948	19802964	229153458	-	MER5B	DNA	hAT-Charlie	116	116	62	35906	-TTGCTGATGCTTAGGC
44	4011	0	4341	chr1	19803154	19803236	229153186	-	MER5A	DNA	hAT-Charlie	77	128	61	35906	T/GT/CTGGGCCCCACT/CCT/CCAGAGA/TTTCTGATTCC/AA/GTT/AGGTCTGGGA/GTC/GT/GGGCCA/TG-GCATAGGTGTTGTTCAGAAGCCCACAGGTA
48	2142	305	2162	chr1	19803154	19803235	229153187	-	MER5B	DNA	hAT-Charlie	35	116	62	35906	T/CT/CTGGGC/TCCCACT/CCT/CCAGAGATTCTGATTC/TC/AATTGGTCTGGGA/GTC/GT/GGGCC+T+A/GGGCATA/CG/AGT/GG/ATTG/TTTC/AA-G-AAG+C+C/TCCA/CCAGGT

17	2644	0	0	chr1	41635477	41635564	207320858	+	L1MC4_3end	LINE	L1	1363	1449	1340	84220	ATATATA/GTATATACAC/GAC/TA/GC/GATAT/GATAC/TAT/GAT/AATAGC/ATG/AC/TAT/GATATAC/TATA/GTA/GTG/TC/TA/GC/TGTATATGTA/GTG/ATA/GTATATACATACATATA
13	3681	0	230	chr1	41635485	41635574	207320848	+	L1ME3G_3end	LINE	L1	666	752	172	84220	ATA/GTAC/AAC/AAC/AACATAT/CAT/CACAT/AAT/CAT/AA/TG/ACTG/AC/TATA/GTA/TT-AC-A/CTATA/GTGC/TACG/ATA/GTAT/CG/ATATG/ATA/GTATA/GTAC/AATA/GCATAT/GAC/AAT/AAC/GGTA/CTG
27	3366	66	556	chr1	41635575	41635726	207320696	+	L1MC4_3end	LINE	L1	1359	1502	1287	84220	A/TT/AATATAC/TATA/GC/TATATACAT/GAC/TGT/GATG/AT/GATATAT/GAC/AATAC/GATATAC/GATAC/TG/ATATGTA/GTA/TTA/GTA/G-CATACATA-TAC/TATA/GC/TGTATGTATATAT/CAC/TAT/CAC/TATAG/TC/TTG/CCA/TAGCTA/CA/TGC/TT/CTT/ACTGAGAA/GGA/GCCA/TAC/GAAA/G+C+AT/AG/TGACAA/CA/CT/CCG/AGTG/AGCA
37	3410	1235	71	chr1	41635686	41635937	207320485	+	L1M5_orf2	LINE	L1	1095	1374	1920	84220	GC/TTT/CTC/TTGAG/AAAGAC/TC/TAAC/TAAAATG/TGAC/TAAAT/CCG/TG/CTG/AGCAAA/GT/ACTGAC/TT/CAG/AC/GAG/AT/AAAT/AAGG/AC/G+A+A/GAAGT/ACG/ACAAATA/TAT/CCAT/AT+ATCAGGAAT+A/GAG/AAAAGGT/AGAT/CG/ATA/CAA/CC/TAT/CAT/GAC/TG/C+C+TG/AA/CAC/GATT/ATTG/AAAAA/G+G+ATC/AA+T+AAGAGAATT/ATG/TATA/GC/AAT/CAACTG/T+TA+TGT/CCAATG/AAATTT+G+AC/AAAG/TT+TAGATGAAAT+T/GGG/AT/CG/AAT/ATTT/CCTA/TGAAAAG/ATAT/CAAATTG/AT/CA/CA+A+AACT+GACA+G/CAAGAAGAG/AG/AG/TAGAAAAC/TCTA/GG/AG/ATAG-AC-TCT/CA/TATAA/TCTATA/TG/AAAGAAAC/TT
60	3480	662	211	chr1	41636291	41636699	207319723	+	L1M5_orf2	LINE	L1	2860	3285	9	84220	G/ACACCATAG/TACAC/AAC/AAG/TA/TA+A+A/TTG/CT/AAT/AATGGATTAG/TAGAT/CA/CTAAAC/TA/GT-CCTA-T/AAAAA/GG/CC/TAAG/AT/AT/CC/TATG/AAAAA/CTA/TCC/TAGAA+GAAAAC+C/ATAT/GT/GAA/GAATATT/CTC/TTAT+G+ACT/CTTA/GGT/GG/TTT/AGGA/CAAAT/GAA/TC/TTT/CTC/TAA-A-G/AC/TC/AC/GGAA/CT/AT/CG/AG/AAC/AC/AT/GCAG/CTG/AC/AT/CCT/ATAAT/AG/AGAAAAG/AATTA/GATAAATC/TT/GA/GACTA/TCATA/TAAAATA/TT/AT/AAAG/ACA/TT-T-A/CC/TA/GTA/TA/CAA/TCAAAAA/GACC/ACC/TA-G-TTAA-TC-A/GAC/AAG/ATT/GAAAAA/GG/ACAAA/GT/CG/CACAGAT/CTGGA/GT/AA/GAAAATATTTGCAAC/TAT/CATA+TATC+TGAA/CAAAGT/GG/AT/CC/TA/TATATCCAT/GAATATG/ATAAT/AA/GAG/ACA/TT/CCC/TACAAAA/TCAG/ATAAGA+AAAAGA+CAT/AAT/CAG/A+C+CCAAT+AAA+AAAATGGA/GG/CAAAG/AA/GAA/TA/TTGAACAGAT/CC/AA/CTTG/CC/AT/C+AAAA+T/GAAGAA/TATAA/CAAATGT/GCT/CAATAAA/GT/CATATGC/AAAAA/G+A+TGC
132	3282	1414	258	chr1	41636575	41636731	207319691	+	L1ME3G_3end	LINE	L1	3	180	744	84220	AATATCCAT/GAATATG/ATAAT/AA/GAG/ACA/TT/CCC/TACAAAA/TCAG/ATAAGAC/AAT/AAT/G+ACA+AG/CCCAAT+AGA+AAAATGGA/GG/CAAAGA/GAA/TATGAACAGA/GT/CC/AATTG/C+ACAG+C/AT/AT/GAAGAAATAA/CAAATGT/GCT/CAATAAAT/CATATGC/AAAA+G+ATGCT+C+G/AG/ACCTCG/AT/CTAA/GTAA+TCA+A/GGA/GAT/AA+TGCA+T/AATTT/AAAAA/CAT/A+CAA
132	3282	1414	258	chr1	41636979	41637310	207319112	+	L1ME3G_3end	LINE	L1	181	544	380	84220	T/GC/AGG/ATAT/CCAC/TC/TTTTT/C+A+CCCATT/CT/AGG/ATTA/GGCAAAG/AAG/TG/TA/TAAG/AT/AGA/TTTGC/ATAC/AC/TATCAAGTGG/TTGGA/CG/AG/AGA/GGG/TA/GG/TT/GC/GGT/GC/AAT/AC/TA/GA/GA/GTAC-T-TCTCAA/TAT/CACTGCTA/GGTA/GGGT/A+GT+A/GTAG/AATG/T+GGTACAGCCATTT+A/TGGAGA/GA/GT/CC/AT/ATTTA/GA/GCC/AGTG/ATCTAC/TC/TAAAATG/TTA+AAATGTA+T/CG/A+TACCCT+TTGACT/CCG/AGCAG/AC/TTT/CT/CG/AC+TTCTA+A/GGTG/AT-GCACACACA-T/CC/TATCA/CTAC/GAC/GAAAC/TAT/CA/TCA/GCACAC/TA/GTGCACA+AAGAGGCATG+C/TAT/CAG/AGGATGA/TC/TCAC/TTGT/CAGCAC/TTA/GTTT+G+TAAC/TAGT/CG/AAG/AG/AA+AT+TGGAT/AG/ACAG/ACCTT/AAATGA/TCCATCAG/AC/TAGGA/GA/GAT/ATGGTTT/AAA-TAAG-TAAATG/TATGA/GTAA/TATA/CCAC/TACA/TATGGAATAG/C