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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| addUnmappedPublic.sh | 2024-01-08 18:06 | 3.3K | |
| bioSampleIdToText.sh | 2024-01-08 18:06 | 870 | |
| bioSampleJsonToTab.py | 2024-01-08 18:06 | 6.7K | |
| bioSampleTextToTab.pl | 2024-01-08 18:06 | 4.4K | |
| branchSpecificMask.py | 2024-01-08 18:06 | 5.8K | |
| branchSpecificMask.yml | 2024-01-08 18:06 | 9.8K | |
| branchSpecificMaskStats.py | 2024-01-08 18:06 | 4.8K | |
| cladeLineageColors.pl | 2024-01-08 18:06 | 6.8K | |
| combineMetadata.sh | 2024-01-08 18:06 | 4.5K | |
| extractPublicTree.sh | 2024-01-08 18:06 | 7.8K | |
| extractUnmappedPublic.sh | 2024-01-08 18:06 | 3.2K | |
| findDropoutContam.pl | 2024-01-08 18:06 | 4.6K | |
| findRefBackfill.pl | 2024-01-08 18:06 | 847 | |
| fixNcbiFastaNames.pl | 2024-01-08 18:06 | 2.9K | |
| gbMetadataAddBioSample.pl | 2024-01-08 18:06 | 3.1K | |
| getCncb.sh | 2024-01-08 18:06 | 4.4K | |
| getCogUk.sh | 2024-01-08 18:06 | 2.6K | |
| getNcbi.sh | 2024-01-08 18:06 | 6.1K | |
| getRelease.sh | 2024-01-08 18:06 | 2.4K | |
| gisaidFromChunks.sh | 2024-01-08 18:06 | 3.2K | |
| gisaidNameToCountry.pl | 2024-01-08 18:06 | 2.5K | |
| includeRecombinants.tsv | 2024-01-08 18:06 | 44K | |
| installSarsCov2Phylo.sh | 2024-01-08 18:06 | 2.5K | |
| kuRunMatOptimize.sh | 2024-01-08 18:06 | 245 | |
| makeNewMaskedVcf.sh | 2024-01-08 18:06 | 13K | |
| makePangolinAssignmentRelease.sh | 2024-01-08 18:06 | 1.5K | |
| mapPublic.sh | 2024-01-08 18:06 | 5.5K | |
| maskDelta.sh | 2024-01-08 18:06 | 780 | |
| nextstrain.clade-mutations.tsv | 2024-01-08 18:06 | 16K | |
| pango.clade-mutations.tsv | 2024-01-08 18:06 | 1.7M | |
| pangoHash.sh | 2024-01-08 18:06 | 753 | |
| processGisaid.sh | 2024-01-08 18:06 | 5.7K | |
| processRelease.sh | 2024-01-08 18:06 | 5.7K | |
| publicCredits.sh | 2024-01-08 18:06 | 3.2K | |
| runNextclade.sh | 2024-01-08 18:06 | 780 | |
| runPangolin.sh | 2024-01-08 18:06 | 351 | |
| searchAllSarsCov2BioSample.sh | 2024-01-08 18:06 | 624 | |
| updateCombinedTree.sh | 2024-01-08 18:06 | 7.6K | |
| updateIdMapping.sh | 2024-01-08 18:06 | 3.1K | |
| updateLineageTreePb.sh | 2024-01-08 18:06 | 4.5K | |
| updatePublic.sh | 2024-01-08 18:06 | 2.2K | |
| updatePublicTree.sh | 2024-01-08 18:06 | 17K | |
| updateSarsCov2Phylo.sh | 2024-01-08 18:06 | 1.1K | |
| usherClusterRun.sh | 2024-01-08 18:06 | 6.9K | |
| util.sh | 2024-01-08 18:06 | 2.4K | |