Found 3 problems:
Error: 'araTha1' twoBitPath does not exist or is not accessible: 'https://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/araTha1/noTwoBitPath.2bit'
warning: 'araTha1' groups file does not exist or is not accessible: 'input/badLocalPath.txt'
warning: 'araTha1' htmlPath file does not exist or is not accessible: 'http://bad.url.path'