##fileformat=VCFv4.2
##reference=hg38
##source=hgvsToVcf hg38 input/testShifting.txt
##FILTER=<ID=HgvsRefAssertedMismatch,Description="Asserted reference sequence in HGVS term does not match actual reference sequence">
##FILTER=<ID=HgvsRefGenomicMismatch,Description="HGVS reference sequence does not match genomic sequence; HGVS reference sequence is included in ALT">
##INFO=<ID=DupToIns,Number=0,Type=Flag,Description="HGVS dup (duplication) was converted to insertion">
##INFO=<ID=BasesShifted,Number=1,Type=Integer,Description="Position of HGVS variant was shifted this number of bases to the left">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO
chr9	1	NC_000009.12:g.1del	NN	N	.	PASS	END=1
chr9	1	NC_000009.12:g.2del	NN	N	.	PASS	BasesShifted=1;END=1
chr9	1	NC_000009.12:g.10000del	NN	N	.	PASS	BasesShifted=9999;END=1
chr9	1	NC_000009.12:g.1_10del	NNNNNNNNNNN	N	.	PASS	END=10
chr9	1	NC_000009.12:g.2_11del	NNNNNNNNNNN	N	.	PASS	BasesShifted=1;END=10
chr9	1	NC_000009.12:g.1_2insN	N	NN	.	PASS	BasesShifted=1;END=1
chr9	1	NC_000009.12:g.1_2insNNNNNNNNNNNNNNNN	N	NNNNNNNNNNNNNNNNN	.	PASS	BasesShifted=1;END=1
chr9	1	NC_000009.12:g.2_3insN	N	NN	.	PASS	BasesShifted=2;END=1
chr9	1	NC_000009.12:g.1_2insA	N	NA	.	PASS	END=1
chr9	1	NC_000009.12:g.1_2insAAAAAAAAAAAAAAAA	N	NAAAAAAAAAAAAAAAA	.	PASS	END=1
chr9	2	NC_000009.12:g.2_3insA	N	NA	.	PASS	END=2
chr9	133255435	NC_000009.12:g.133255445_133255446insGT	G	GGT	.	PASS	BasesShifted=10;END=133255435
chr9	133255435	NC_000009.12:g.133255445_133255446insGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	G	GGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	.	PASS	BasesShifted=10;END=133255435
chr9	133255435	NC_000009.12:g.133255445_133255446del	GGT	G	.	PASS	BasesShifted=9;END=133255437
chr9	133255435	NM_020469.3:c.*229_*230insCA	G	GGT	.	PASS	BasesShifted=1;END=133255435
chr9	133255435	NM_020469.3:c.*230_*231insAC	G	GGT	.	PASS	END=133255435
chr9	133255435	NM_020469.3:c.*221_*222insCA	G	GGT	.	PASS	BasesShifted=9;END=133255435
chr9	133255435	NM_020469.3:c.*220_*221insAC	G	GGT	.	PASS	BasesShifted=10;END=133255435
chr9	133255435	NM_020469.3:c.*219_*220insCA	G	GGT	.	PASS	BasesShifted=11;END=133255435
chr9	133255444	NC_000009.12:g.133255445_133255447del	GTGA	G	.	PASS	END=133255447
chr9	133269983	NC_000009.12:g.133269984_133269999del	TCAAAAAAAAAAAAAAA	T	.	PASS	END=133269999
chr9	133269984	NC_000009.12:g.133269999_133270000insA	C	CA	.	PASS	BasesShifted=15;END=133269984
chr9	133269984	NC_000009.12:g.133269999_133270000insAAAA	C	CAAAA	.	PASS	BasesShifted=15;END=133269984
chr9	133269984	NC_000009.12:g.133269999_133270000insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	C	CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	.	PASS	BasesShifted=15;END=133269984
chr9	133269984	NC_000009.12:g.133269999del	CA	C	.	PASS	BasesShifted=14;END=133269985
chr9	133269984	NC_000009.12:g.133269990_133269999del	CAAAAAAAAAA	C	.	PASS	BasesShifted=5;END=133269994