##fileformat=VCFv4.2
##reference=hg38
##source=hgvsToVcf hg38 input/clinVarChanges.txt
##FILTER=<ID=HgvsRefAssertedMismatch,Description="Asserted reference sequence in HGVS term does not match actual reference sequence">
##FILTER=<ID=HgvsRefGenomicMismatch,Description="HGVS reference sequence does not match genomic sequence; HGVS reference sequence is included in ALT">
##INFO=<ID=DupToIns,Number=0,Type=Flag,Description="HGVS dup (duplication) was converted to insertion">
##INFO=<ID=BasesShifted,Number=1,Type=Integer,Description="Position of HGVS variant was shifted this number of bases to the left">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO
chr1	1232300	NM_016176:c.-583A>C	T	G	.	PASS	.
chr1	1232594	NM_080605(B3GALT6):c.323_344del22	CGGCGCGCCCTGGAGCGGGAGCA	C	.	PASS	BasesShifted=6;END=1232616
chr1	1232594	NM_080605(B3GALT6):c.323_344del22	CGGCGCGCCCTGGAGCGGGAGCA	C	.	PASS	BasesShifted=6;END=1232616
chr1	1232630	NM_080605(B3GALT6):c.353delA	GA	G	.	PASS	END=1232631
chr1	1232684	NM_016176:c.-984_-976del	GTGCTGGCCA	G	.	PASS	BasesShifted=8;END=1232693
chr1	3403006	NM_022114(PRDM16):c.884+9_884+39del31	GCCCTCCTCTGAGTCTTCCTCCCCTTCCCGTA	G	.	PASS	END=3403037
chr1	7961850	NM_007262(PARK7):c.-24+75_-24+92dup	G	GGTGCTGGACGGTGTCCCT	.	PASS	DupToIns;BasesShifted=17;END=7961850
chr1	11846007	NM_006172(NPPA):c.456_*1delAA	CTT	C	.	PASS	END=11846009
chr1	25408815	NM_020485(RHCE):c.203A=	T	.	.	PASS	.
chr1	43349337	NM_005373(MPL):c.1543_1544delTGinsAA	TG	AA	.	PASS	.
chr1	45333427	NM_001048173:c.248_249insA	G	GT	.	PASS	BasesShifted=1;END=45333427
chr10	27066474	NM_014915(ANKRD26):c.1269+7_1269+12delinsA	CCATAGA	CT	.	PASS	END=27066480
chr11	5225643	NM_000518(HBB):c.399A>Y	T	R	.	PASS	.
chr13	32316507	NM_000059(BRCA2):c.48_50delGACins10	AGAC	ANNNNNNNNNN	.	PASS	END=32316510
chr13	32339555	NM_000059(BRCA2):c.5201_5205delAAAAAins6	GAAAAA	GNNNNNN	.	PASS	END=32339560
chr14	50911730	NM_002863(PYGL):c.1964_1969invAAAAAG	CTTTTT	AAAAAG	.	PASS	.
chr17	31228914	NM_000267(NF1):c.2410-110_2850+65delinsAAAA	TTTACATTTTTTGTACTTTTGTCATGGAAGAAATGTTGGATAAAGCATAATTTGTCAAGTCTCAACTAATTAAGGTTTAATTCATGCTTTGCACAAAAATTTTGTGTTTAGGCTGCTGAAAGCCTTCACAAGACCATTGTTAAGAGGCGAATGTCCCATGTGAGTGGAGGAGGATCCATAGATTTGTCTGACACAGACTCCCTACAGGAATGGATCAACATGACTGGCTTCCTTTGTGCCCTTGGGGGAGTGTGCCTCCAGCAGAGAAGCAATTCTGGCCTGGCAACCTATAGCCCACCCATGGGTCCAGTCAGTGAACGTAAGGGTTCTATGATTTCAGTGATGTCTTCAGAGGGAAACGCAGATACACCTGTCAGCAAATTTATGGATCGGCTGTTGTCCTTAATGGTGTGTAACCATGAGAAAGTGGGACTTCAAATACGGACCAATGTTAAGGATCTGGTGGGTCTAGAATTGAGTCCTGCTCTGTATCCAATGCTATTTAACAAATTGAAGAATACCATCAGCAAGTTTTTTGACTCCCAAGGACAGGTAAAGTGTTCTCTTATTTTTCACCTTTCTCTATGAATAGAGTGACTTGTTTGAAATAAGCCTTT	TAAAA	.	PASS	END=31229530
chr17	31259977	NM_000267(NF1):c.4368-391_4515-122delins105	GGCACTCTGTGTACCCATACAAAGTTAAAAGGATCAAAGTTTTAATCCTGGCTCTGACCTAGCAGGCTATATATCTTTGGGGAGGTCTTTCGTCTGGACCTTCATTTCCTTATCTGTAAAATACTAGCCTCTTTCCAAAGTTTCATCCATCTTAATTTTGTTGTTGTTTAACTTCAGAGCCTACTTTGAAGCTGAAGCCGGGTATCAGAAATGGAAAGCCAACTTTCTCCTTGTCCTTTTTGCTTTGTCTAATGTCAAGTCACATTGTGTGAACAAGCCCTCCATATTTGTAATCTTAGTTACTTCACAAAGTTACTTCTTATAAATTTAATTCAAACATAAGTCTGGGTGTATCTGGTGTTGAAAATTCTAATGACTTTGCATTTTTGAAGGTTTTTCCTTGATATAGCATCTGATTGTCCTACAAGTGATGCAGTAAATCATAGTCTTTCCTTCATAAGTGACGGCAATGTGCTTGCTTTACATCGTCTACTCTGGAACAATCAGGAGAAAATTGGGCAGTATCTTTCCAGCAACAGGTAAGATTTCCCAGTCATGGGGATAGTGAACACTCTCCGTTTAAATTTAGATTAATACAATTATTGGTCATGAATAGTGCTTTTTACTTTGCATCTTCTTGGACTAAGAATTATGGTTTAGAAAGAGAAAGATTCTTTTTTTCAAAAAAATACAAACAAAAGGTTAAGTCATATTAAATAATCAACAAACCTACCTAGGTTCCAGTGGTCATTATTATTATTTTTTTGTCAGGTTAAGAAATCACAGATTTGCTCTTTGGGTTTTTATGGCTTGCAGATTGTTATAGATCCAAAGAAGTTCAGATTAGCGTTGGCATTTGACTCTGAAGAACAGCCAATTCGTAGGAATTCAGTAATTAAAATATTGTCAGTGTTTTAATTCTATGATAAACTCATTCGTGATACTCTTAAGTATATGCAAATAAAGCTTTATATAGAAAATACCGGCCTGGCACAGTGGATTACACCTATAATCTCAGCACTTTGGGTGGCTGAGGCAGGCAGATCACCTGAGGTCAGGAGTTCGAGATCAGGCTGGCCAACATGGTGAAACCCTGTCTCTACGAAAAATACAAAAATTAGCTGGGCATGGTGGCAGGGGCCTGTAATCCCAGCTACTCGGGAGGCTGAGCCAGGAAAATCGCTTGAACCCAGGAGGCAGAGGTTGCAGTGATCCAAGATCGCACAATTGTACTCCAGCCTGGGCCACAAGAGCTAAACTCCATCTCAGAAATTAAAAAAAAAAAAAAAATACTTAAAAATCAAAATTATTAATTTGGGCATTGTTTCATTAGCTCTTATTAGTCTCTTGTGTAACATAAATTACTTGCTGTCCCATCTAGTTATATAAACTTGTAAAGGGACCAAATTCCTATGTATGAAGAGTTCCTTACAAAGGAAGAATGAGTCCAAATTATTTTTAAATGCCAATAAAAATGATTAGCACATTCACGGGAAAAGTAGTGGACTGTGAAGCTAAGGGTAAGCAATTGGGAGATGGGAGTTTAAATGACAGGGCATTTTAATCTTTTATGAATTATTAATGGATTGAAGTAGACATGGTCCTGAGGTCTT	GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	.	PASS	END=31261589
chr17	43092396	NM_007298:c.788-1374_788-1365del10	ATTAATATTGC	A	.	PASS	END=43092406
chr17	43094140	NM_007294(BRCA1):c.1387_1390delAAAAinsGAAAG	GTTTT	GCTTTC	.	PASS	END=43094144
chr19	7525165	NM_020533(MCOLN1):c.236_237insNC_012920.1:m.12435_12527	A	ACCATTATGTAAAATCCATTGTCGCATCCACCTTTATTATCAGTCTCTTCCCCACAACAATATTCATGTGCCTAGACCAAGAAGTTATTATCTC	.	PASS	END=7525165
chr2	47445582	NM_000251(MSH2):c.1311_1334del24insNM_000251.1:c.1338_1361inv24	GACTCCTCTTACTGATCTTCGTTC	CTTCTCCAAGTTTCAGGAAATGAT	.	PASS	.
chr2	47804481	NM_000179(MSH6):c.1573_3439-429dupinsTAT	G	GAGTGTGCTGGAAGGTGATCCCTCTGAGAACTACAGTAAGTATCTTCTTAGCCTCAAAGAAAAAGAGGAAGATTCTTCTGGCCATACTCGTGCATATGGTGTGTGCTTTGTTGATACTTCACTGGGAAAGTTTTTCATAGGTCAGTTTTCAGATGATCGCCATTGTTCGAGATTTAGGACTCTAGTGGCACACTATCCCCCAGTACAAGTTTTATTTGAAAAAGGAAATCTCTCAAAGGAAACTAAAACAATTCTAAAGAGTTCATTGTCCTGTTCTCTTCAGGAAGGTCTGATACCCGGCTCCCAGTTTTGGGATGCATCCAAAACTTTGAGAACTCTCCTTGAGGAAGAATATTTTAGGGAAAAGCTAAGTGATGGCATTGGGGTGATGTTACCCCAGGTGCTTAAAGGTATGACTTCAGAGTCTGATTCCATTGGGTTGACACCAGGAGAGAAAAGTGAATTGGCCCTCTCTGCTCTAGGTGGTTGTGTCTTCTACCTCAAAAAATGCCTTATTGATCAGGAGCTTTTATCAATGGCTAATTTTGAAGAATATATTCCCTTGGATTCTGACACAGTCAGCACTACAAGATCTGGTGCTATCTTCACCAAAGCCTATCAACGAATGGTGCTAGATGCAGTGACATTAAACAACTTGGAGATTTTTCTGAATGGAACAAATGGTTCTACTGAAGGAACCCTACTAGAGAGGGTTGATACTTGCCATACTCCTTTTGGTAAGCGGCTCCTAAAGCAATGGCTTTGTGCCCCACTCTGTAACCATTATGCTATTAATGATCGTCTAGATGCCATAGAAGACCTCATGGTTGTGCCTGACAAAATCTCCGAAGTTGTAGAGCTTCTAAAGAAGCTTCCAGATCTTGAGAGGCTACTCAGTAAAATTCATAATGTTGGGTCTCCCCTGAAGAGTCAGAACCACCCAGACAGCAGGGCTATAATGTATGAAGAAACTACATACAGCAAGAAGAAGATTATTGATTTTCTTTCTGCTCTGGAAGGATTCAAAGTAATGTGTAAAATTATAGGGATCATGGAAGAAGTTGCTGATGGTTTTAAGTCTAAAATCCTTAAGCAGGTCATCTCTCTGCAGACAAAAAATCCTGAAGGTCGTTTTCCTGATTTGACTGTAGAATTGAACCGATGGGATACAGCCTTTGACCATGAAAAGGCTCGAAAGACTGGACTTATTACTCCCAAAGCAGGCTTTGACTCTGATTATGACCAAGCTCTTGCTGACATAAGAGAAAATGAACAGAGCCTCCTGGAATACCTAGAGAAACAGCGCAACAGAATTGGCTGTAGGACCATAGTCTATTGGGGGATTGGTAGGAACCGTTACCAGCTGGAAATTCCTGAGAATTTCACCACTCGCAATTTGCCAGAAGAATACGAGTTGAAATCTACCAAGAAGGGCTGTAAACGATACTGGACCAAAACTATTGAAAAGAAGTTGGCTAATCTCATAAATGCTGAAGAACGGAGGGATGTATCATTGAAGGACTGCATGCGGCGACTGTTCTATAACTTTGATAAAAATTACAAGGACTGGCAGTCTGCTGTAGAGTGTATCGCAGTGTTGGGTAAGACTTTGAACAAGCTTGTTCTCAGGCTTTGATAAGTAGTGCTGTTTGCCAGCTGTATATTATCCCTAAAAATAAGTAATAAGGTATATATGGTACATATTTTGACATGCATATACATATTTGCATCCTGACTAGGCTGCCCACAGCAATTTAAGTTACTTGAAACTCGCTTTTATCTTAGTAGCCCTTTGGCCTTTCTTCAGTTTTTTTTTTTTTTTTTTTTTTTTTGAGACATGGTCTTGCTCTGTTGCCCAGGCTAGAATATGGTGACACAACCATGGCTACTGCAGCCTCGACCTCCCAGGCTTAAGTGATCTTTCCACCTCAGCCTCCCAAGTAGCTGAGATTACAGATATGCACCACCATGCATGGCTAATATTTAAATGTTTGTAGAGAGATGGGGTCTCACTGTGTTGCCAGGACTGGTCTTGAACTCCTGGGCTCAAGTGATCCTCCTGCCTCGGCTTCCCAAAGTGCTGAGGTTACAGGCATGACCCATTGCGCCTGGCCCTTTCTTCAGTCTTTAATAATCGAACAAAAGGTTTTTGTTTTTAGACAGTGTCTTGCTCTGTTACCCAGGACAGACCTCTCGTGTCAGCCTCTTAGGTAGCTAGGATTTACAGGTAAGCACCGGCGTGCCCTGCTTTATTTTTTTGGTGGGGGAAGGGGGAAGGGAGTTGAAGCTTCCCTATGTTGCCCAGGCTGGTCTTGAACTCCTGGCCTCAAGTGATCCTCCAGTCTCCCAAAAGTGCTGGGATTACAGGCATGAGCCACCGCTCCCGGCCCAAAAGATTTTTAAATGTGTTATACTTCATGAGACAGGCTTTATTTTAGATCGAATTTTATTTATCAATAAAAAGTTGAGCTTTTTATTATTTGGTGAATACTGTTTCAAGGTGCTTTGTTACACTATCTGTTGATCCAACATTTAAAAATTGTTTTATTACAACCTTTGCATTTCAGTGAATCCATCTGCATACAATTTTAAAAGAATCATTCCTTTTTTCTGTAGCCAAATTGTCAAAGATTCTTTCCTACAATTGATTTTTCAAAGCCCTGAGTTAGGAATTTACAATTTGGCAACCATCTCAACTTCATAAGCAATTTTGTTCTTTAAATGTCACGGCCAACATTACCTGGAACCATTGCTGTTTTATAGTTTAGGTTTATGTTGTATATTTTTTTTAATTTTTTAGAGACGGGGTCTTGCTGTTTTCAGACTGGAGTACAATGGGATGACTAGCTCACTGCAGCCTCAAACTGCTGGGTTCAAGTGATTCTCCTTCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGGTCACCATCACACCTGGCTAATTTTTGTATTTTTGGTAGAGACAGGGTTTTTCCCGTGTTGGCCAGGCTGTTCTTGAATTCCTGACCTCAAAGCGATCTGCCCGCCTTGATCTCCGAAAGAGCTGGGATTACACGCATGAGCCACTGCGCCCAGCCCTGTTTTTTTTTTTTTTTTTTTTTTAAATAATGGTAGTTTACTTGAATTTGTAACACAGTAACACAAAACTATTTTGATCTGAACGCAAGTATCTAATGGAACAGAATAATATACTTCCTTTTAGTGTGCTGCATTTGGTTACTGGGTAATTTAAAATTCTTCCTCAGCACAGGTGTTCAAAAACCAGTCTTCAGAGATTGTTTTCATATCAGTGTGCCAACTTTGGCACATTCTGCTAAGTAAGAGGCTTAAGTGTAGCATGTTTCTGCTGTTTTGTGTTTGTTTTGTTTTGTTTTTTGAGACAGAGTCTCTCTGTCGCCCAGGCTGGAGTGCATTGGTGCGATCTTGGCTCATTGCAACCTCTGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGCGTAGCTGGGATTACAGGCATATGCCACGTGTATTAGGCACTGCTAATTTCTGTATTTTTAGTAGAGACGAGGTTTCACCATGTTGGTCAGGCTGGTCCTGAACTGCTGACCTCGTGAACTCTGCCCGCCTAGGCCTCCTGAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCCTCTGCTCTATCTTTTAGCTTTCCCTTGGCACTTCTATGGTCCAGATGTTAGAGGGTAAGTATTTTGATGGGGGAGATCGTTGGACTGTAATTGAAAGTTATGTCTTATAATGAAATGTGTTATATAAAGAAGACCTATAAAACACTTAGGCTGATAAAACCCCCAAACGATGAAGCCTCACTTTTACCCTCTCTTTTAACAGATGTTTTACTGTGCCTGGCTAACTATAGTCGAGGGGGTGATGGTCCTATGTGTCGCCCAGTAATTCTGTTGCCGGAAGATACCCCCCCCTTCTTAGAGCTTAAAGGATCACGCCATCCTTGCATTACGAAGACTTTTTTTGGAGATGATTTTATTCCTAATGACATTCTAATAGGCTGTGAGGAAGAGGAGCAGGAAAATGGCAAAGCCTATTGTGTGCTTGTTACTGGACCAAATATGGGGGGCAAGTCTACGCTTATGAGACAGGTAACTGATTCTTAAAGTTTTGTTATCAGAAAGTCATTTGTGACATTAGGAATAACATACTTAGGTGATCATTTTCCAAACACAGTTACATAAAAGTCAGCCAGTGACTTAATAGGAAGCAAAGGGAAATTACTCCCTGTGTTATAAAATTGAGAATTATATTTAGCTGAAACATCGATGCTTAATGTTAAGGGGAATATATGTTAAAAAGGGGAAGGAGGTCAGTCATTCAGGTCATGAGGCCCTTTGACTTGAATTCATTTCCTCAGAAGGTAGGTATATTCATAGTGAACAAAAATACAAAGGCTGTATGAAAAGATGAAAATGTTACAGGTTTATCCTTAAATTAGACTCATTTGCAGAAATGCAAATGAGGTAAGAAAGCAAATATAGTTCATGACCTCTAGCAACTGTTGAAAACTGCTCTTTAGGGATGACATGCTGGCCCTTTTTTTTTTGTTGTTGCCAAGGCTGAAGTGCAGTGGCACCATCACAGCTCACTGCAGCCTCGAACTCCCAGGTTCAACCCTTCCTCCTGCCTCAGCCTCCCCAGTAGCTGGGACTACAGATGTACACCATCATGCCTAGCTCATTTTTAAAAAAATTTTTTATGGCATTGTATTTATCTTCTCTTTATAACCAGGGGTTGACCAGCCACAGAACTTGTAAAGTTTTTTATATTTTTAAAAGGTTGTAAGAAATAGTAGTAGTTGGCTGGTCCCCGCTGCTCTCCTGCATTATAGTATACTTCTGTTCACCTAGTTTGCTAGAGAGAGGCAGTATAGTGTGTATAGTGTAT	.	PASS	DupToIns;END=47804481
chr6	112187567	NM_002290(LAMA4):c.827_828AC=	GT	.	.	PASS	.
chr7	21901172	NM_001277115(DNAH11):c.13473_*75dup154	A	ACATCTGGACCTTCAGGCTGAAGAGCGAAGAGAAGACTGCAAAATGGGTTCTGGCTGGAGTGGCTCTGCTTCTAGAAGCGTAAGGTAACACTGGCATTCCTCTAGCCTCTGCTGGAGTGCAGTGAGGATTTTCTAGCATGTTGCTGCACTGTTCC	.	PASS	DupToIns;BasesShifted=3;END=21901172
chr7	117480097	NM_000492(CFTR):c.4_53+69del119ins299	GCAGAGGTCGCCTCTGGAAAAGGCCAGCGTTGTCTCCAAACTTTTTTTCAGGTGAGAAGGTGGCCAACCGAGCTTCGGAAAGACACGTGCCCACGAAAGAGGAGGGCGTGTGTATGGGTT	GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	.	PASS	END=117480216
chrX	25013690	NM_139058(ARX):c.304_305ins21	G	GNNNNNNNNNNNNNNNNNNNNN	.	PASS	END=25013690
chrX	154030639	NM_001110792(MECP2):c.1121_1224del104insAAGAAGGAGCACCACCACCATCACCACCACTCAGAGTCCCCAAAGGCCCCCGTGCCACTGCTCCCACCCCTGCCC	CGGAGCTCTCGGGCTCAGGTGGAGGTGGGGGCAGGGGTGGGAGCAGTGGCACGGGGGCCTTTGGGGACTCTGAGTGGTGGTGATGGTGGTGGTGCTCCTTCTTGG	CGGGCAGGGGTGGGAGCAGTGGCACGGGGGCCTTTGGGGACTCTGAGTGGTGGTGATGGTGGTGGTGCTCCTTCTT	.	PASS	END=154030743