Index of /kundaje/marinovg/oak/various/programs/kent/src/hg/utils/automation

[ICO]NameLast modifiedSizeDescription

[PARENTDIR]Parent Directory  -  
[TXT]AsmHub.pm2024-01-08 18:06 1.4K 
[TXT]Encode.pm2024-01-08 18:06 19K 
[TXT]EnsGeneAutomate.pm2024-01-08 18:06 959K 
[TXT]HgAutomate.pm2024-01-08 18:06 29K 
[TXT]HgDb.pm2024-01-08 18:06 5.6K 
[TXT]HgRemoteScript.pm2024-01-08 18:06 3.3K 
[TXT]HgStepManager.pm2024-01-08 18:06 5.5K 
[TXT]RAFile.pm2024-01-08 18:06 1.5K 
[TXT]SafePipe.pm2024-01-08 18:06 3.3K 
[TXT]accRsu.pl2024-01-08 18:06 1.4K 
[TXT]addScores.pl2024-01-08 18:06 1.5K 
[TXT]aliasBedToCt.pl2024-01-08 18:06 4.1K 
[TXT]aliasTabToText.pl2024-01-08 18:06 1.9K 
[TXT]aliasTextToBed.pl2024-01-08 18:06 4.1K 
[TXT]altScaffoldPlacementToBed.pl2024-01-08 18:06 2.6K 
[TXT]asmHubAllGaps.pl2024-01-08 18:06 2.7K 
[TXT]asmHubAssembly.pl2024-01-08 18:06 3.8K 
[TXT]asmHubAugustusGene.pl2024-01-08 18:06 5.5K 
[TXT]asmHubChainNet.pl2024-01-08 18:06 7.8K 
[TXT]asmHubChainNetComposite.pl2024-01-08 18:06 9.1K 
[TXT]asmHubChainNetTrackDb.pl2024-01-08 18:06 12K 
[TXT]asmHubChainNetTrackDb.sh2024-01-08 18:06 12K 
[TXT]asmHubChromAlias.pl2024-01-08 18:06 16K 
[TXT]asmHubCpG.pl2024-01-08 18:06 4.4K 
[TXT]asmHubCrisprAll.pl2024-01-08 18:06 13K 
[TXT]asmHubEbiGene.pl2024-01-08 18:06 5.3K 
[TXT]asmHubEnsGene.pl2024-01-08 18:06 3.3K 
[TXT]asmHubGap.pl2024-01-08 18:06 4.2K 
[TXT]asmHubGatewayPage.pl2024-01-08 18:06 18K 
[TXT]asmHubGc5Percent.pl2024-01-08 18:06 1.8K 
[TXT]asmHubHtml.pl2024-01-08 18:06 4.0K 
[TXT]asmHubNcbiGene.pl2024-01-08 18:06 3.3K 
[TXT]asmHubNcbiRefSeq.pl2024-01-08 18:06 11K 
[TXT]asmHubRepeatMasker.sh2024-01-08 18:06 7.1K 
[TXT]asmHubRmsk.pl2024-01-08 18:06 5.8K 
[TXT]asmHubRmskJoinAlign.pl2024-01-08 18:06 11K 
[TXT]asmHubSimpleRepeat.pl2024-01-08 18:06 3.2K 
[TXT]asmHubTOGA.pl2024-01-08 18:06 6.4K 
[TXT]asmHubTanDups.pl2024-01-08 18:06 5.6K 
[TXT]asmHubTrackDb.sh2024-01-08 18:06 40K 
[TXT]asmHubWindowMasker.pl2024-01-08 18:06 3.0K 
[TXT]asmHubXenoRefGene.pl2024-01-08 18:06 4.7K 
[DIR]aws/2024-01-08 18:06 -  
[   ]blastz-make-joblist2024-01-08 18:06 3.3K 
[   ]blastz-normalizeLav2024-01-08 18:06 2.7K 
[   ]blastz-run-ucsc2024-01-08 18:06 23K 
[TXT]categorizeBigDbSnp.pl2024-01-08 18:06 2.1K 
[TXT]categorizeSnps.pl2024-01-08 18:06 3.0K 
[TXT]checkBlastTabs.sh2024-01-08 18:06 4.0K 
[TXT]chromAlias.pl2024-01-08 18:06 2.3K 
[TXT]chromAliasBedTest.pl2024-01-08 18:06 2.3K 
[TXT]chromAliasToTxt.pl2024-01-08 18:06 1.2K 
[TXT]cluster.txt2024-01-08 18:06 3  
[TXT]collectNcbiFuncAnnotations.pl2024-01-08 18:06 1.8K 
[DIR]configFiles/2024-01-08 18:06 -  
[TXT]constructLiftFile.pl2024-01-08 18:06 1.2K 
[   ]cosmicToBed2024-01-08 18:06 7.7K 
[   ]dbAssemblyEquivalents.tab2024-01-08 18:06 13K 
[TXT]doAssemblyHub.pl2024-01-08 18:06 81K 
[TXT]doAugustus.pl2024-01-08 18:06 16K 
[TXT]doAutoTrack.pl2024-01-08 18:06 10K 
[TXT]doBigDbSnp.pl2024-01-08 18:06 22K 
[TXT]doBlastzChainNet.pl2024-01-08 18:06 74K 
[TXT]doCpgIslands.pl2024-01-08 18:06 9.2K 
[TXT]doCrispr.pl2024-01-08 18:06 23K 
[TXT]doDbSnp.pl2024-01-08 18:06 61K 
[TXT]doDbSnpMaskSequence.pl2024-01-08 18:06 8.6K 
[TXT]doDbSnpOrthoAlleles.pl2024-01-08 18:06 9.2K 
[TXT]doEnsGeneUpdate.pl2024-01-08 18:06 36K 
[TXT]doGapOverlap.pl2024-01-08 18:06 10K 
[TXT]doGenscan.pl2024-01-08 18:06 13K 
[TXT]doHgNearBlastp.pl2024-01-08 18:06 18K 
[TXT]doIdKeys.pl2024-01-08 18:06 10K 
[TXT]doNcbiRefSeq.pl2024-01-08 18:06 38K 
[TXT]doRecipBest.pl2024-01-08 18:06 19K 
[TXT]doRepeatMasker.pl2024-01-08 18:06 28K 
[TXT]doRepeatModeler.pl2024-01-08 18:06 9.8K 
[TXT]doSameSpeciesLiftOver.pl2024-01-08 18:06 22K 
[TXT]doSimpleRepeat.pl2024-01-08 18:06 16K 
[TXT]doTandemDup.pl2024-01-08 18:06 13K 
[TXT]doTemplate.pl2024-01-08 18:06 5.2K 
[TXT]doWindowMasker.pl2024-01-08 18:06 9.2K 
[TXT]doXenoRefGene.pl2024-01-08 18:06 15K 
[DIR]ensGene/2024-01-08 18:06 -  
[TXT]ensGeneScaffolds.pl2024-01-08 18:06 1.9K 
[   ]ensVersions2024-01-08 18:06 3.2K 
[TXT]ensemblInfo.pl2024-01-08 18:06 1.8K 
[TXT]extractGtf.pl2024-01-08 18:06 1.7K 
[TXT]extractNestedRepeats.pl2024-01-08 18:06 6.1K 
[   ]extractRepeats2024-01-08 18:06 2.3K 
[TXT]extractSource.pl2024-01-08 18:06 1.2K 
[TXT]faToHub.sh2024-01-08 18:06 9.2K 
[   ]fastaSubseq2024-01-08 18:06 1.2K 
[TXT]fetchOneNcbi.sh2024-01-08 18:06 1.0K 
[   ]fileServer2024-01-08 18:06 358  
[TXT]findEnsFtpNames.sh2024-01-08 18:06 2.5K 
[TXT]fixNcbiFuncCoords.pl2024-01-08 18:06 1.9K 
[TXT]gbffToCds.pl2024-01-08 18:06 2.1K 
[DIR]genbank/2024-01-08 18:06 -  
[TXT]gff3ToRefLink.pl2024-01-08 18:06 17K 
[TXT]gireVcfToUcsc.pl2024-01-08 18:06 1.7K 
[TXT]gpToIx.pl2024-01-08 18:06 2.0K 
[TXT]grcIncidentDb.pl2024-01-08 18:06 12K 
[TXT]grcIncidentUpdate.sh2024-01-08 18:06 3.4K 
[TXT]grcParseGff.pl2024-01-08 18:06 1.7K 
[TXT]grcRunIncidentUpdate.sh2024-01-08 18:06 3.1K 
[TXT]grcUpdate.sh2024-01-08 18:06 3.1K 
[TXT]gvfToBed8Attrs.pl2024-01-08 18:06 1.6K 
[   ]gwUploadFile2024-01-08 18:06 4.5K 
[   ]importTrackHub2024-01-08 18:06 4.4K 
[DIR]incidentDb/2024-01-08 18:06 -  
[TXT]joinOrthoAlleles.csh2024-01-08 18:06 2.3K 
[TXT]kmerCollapsePairedEnds.pl2024-01-08 18:06 2.7K 
[TXT]kmerPairs.pl2024-01-08 18:06 2.3K 
[TXT]kmerPrint.pl2024-01-08 18:06 1.7K 
[DIR]lastz_D/2024-01-08 18:06 -  
[TXT]liftRMAlign.pl2024-01-08 18:06 4.5K 
[TXT]loadCosmic.pl2024-01-08 18:06 5.5K 
[TXT]makeDownloads.pl2024-01-08 18:06 49K 
[TXT]makeGenomeDb.pl2024-01-08 18:06 54K 
[TXT]makePushQSql.pl2024-01-08 18:06 29K 
[   ]makefile2024-01-08 18:06 2.0K 
[TXT]mkConfigRa.sh2024-01-08 18:06 3.5K 
[TXT]monthlyUpdateIgtc.csh2024-01-08 18:06 1.0K 
[TXT]n50.pl2024-01-08 18:06 2.3K 
[TXT]nBedToEnds.pl2024-01-08 18:06 3.1K 
[TXT]ncbiRefSeqOtherAttrs.pl2024-01-08 18:06 7.2K 
[TXT]ncbiRefSeqOtherIxIxx.pl2024-01-08 18:06 3.4K 
[TXT]oneAndDoneBrowser.sh2024-01-08 18:06 8.0K 
[DIR]openStack/2024-01-08 18:06 -  
[TXT]overlapPslToBed.pl2024-01-08 18:06 1.6K 
[TXT]pairLastz.sh2024-01-08 18:06 19K 
[TXT]parseLrgXml.pl2024-01-08 18:06 16K 
[   ]parseRefSeqFuncElems2024-01-08 18:06 5.6K 
[TXT]partitionSequence.pl2024-01-08 18:06 9.7K 
[TXT]perlPara.pl2024-01-08 18:06 8.9K 
[TXT]prepConfig.pl2024-01-08 18:06 6.9K 
[TXT]quickDbBuild.sh2024-01-08 18:06 2.0K 
[TXT]quickDbdbBuild.sh2024-01-08 18:06 4.1K 
[TXT]rmskBed6+10.pl2024-01-08 18:06 965  
[TXT]runLastzChain.sh2024-01-08 18:06 4.2K 
[TXT]simplePartition.pl2024-01-08 18:06 6.5K 
[TXT]simplePerl.pl2024-01-08 18:06 1.9K 
[TXT]snpAddTGPAlleleFreq.pl2024-01-08 18:06 9.9K 
[TXT]synBlastp.csh2024-01-08 18:06 5.4K 
[TXT]translateDgvGold.py2024-01-08 18:06 3.4K 
[TXT]translateDgvPlus.pl2024-01-08 18:06 2.8K 
[   ]ucscAltAgp2024-01-08 18:06 3.8K 
[TXT]ucscCompositeAgp.pl2024-01-08 18:06 1.8K 
[TXT]ucscToINSDC.sh2024-01-08 18:06 1.9K 
[TXT]unigene.csh2024-01-08 18:06 2.7K 
[TXT]unlocalizedWithChroms.pl2024-01-08 18:06 2.5K 
[TXT]unplacedScaffolds.pl2024-01-08 18:06 6.5K 
[TXT]unplacedWithChroms.pl2024-01-08 18:06 1.3K 
[TXT]updateIgtc.pl2024-01-08 18:06 5.1K 
[TXT]verifyBrowser.pl2024-01-08 18:06 10K 
[TXT]xenoRefGeneIx.pl2024-01-08 18:06 4.1K 

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