# JASPAR Track integration by Daniel 8/20/21
    #trackDb copied in the hg19.txt makeDoc
    cd /hive/data/genomes/hg38/bed
    mkdir jaspar
    cd jaspar
    wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2018/hg38/JASPAR2018_hg38_all_chr.bb
    wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2020/JASPAR2020_hg38.bb
    mv JASPAR2020_hg38.bb JASPAR2020.bb
    mv JASPAR2018_hg38_all_chr.bb JASPAR2018.bb
    cd /gbdb/hg38
    mkdir jaspar
    cd jaspar
    ln -s /hive/data/genomes/hg38/bed/jaspar/JASPAR2018.bb .
    ln -s /hive/data/genomes/hg38/bed/jaspar/JASPAR2020.bb .
###############################################################################


# JASPAR 2022 track addition by Daniel 10/11/21
cd ~/kent/src/hg/makeDb/trackDb
# trackDb copied in the hg19.txt makeDoc
cd /hive/data/genomes/hg38/bed/jaspar
wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2022/JASPAR2022_hg38.bb
mv JASPAR2022_hg38.bb JASPAR2022.bb
cd /gbdb/hg38/jaspar
ln -s /hive/data/genomes/hg38/bed/jaspar/JASPAR2022.bb .

###############################################################################

# JASPAR$ 2022 bigBed update 12/7/21
cd /hive/data/genomes/hg38/bed/jaspar
wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2022/JASPAR2022_hg38.bb
rm JASPAR2022.bb
mv JASPAR2022_hg38.bb JASPAR2022.bb
ls -lh
ls -lh /gbdb/hg19/jaspar

###############################################################################

# JASPAR$ 2022 bigBed update 1/3/22
cd /hive/data/genomes/hg38/bed/jaspar
wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2022/JASPAR2022_hg38.bb
rm JASPAR2022.bb
mv JASPAR2022_hg38.bb JASPAR2022.bb
ls -lh
ls -lh /gbdb/hg19/jaspar


###############################################################################
# JASPAR 2024 bigBed update 11/13/24

cd /hive/data/genomes/hg38/bed/jaspar
wget https://frigg.uio.no/JASPAR/JASPAR_genome_browser_tracks/current/hg38/JASPAR2024_hg38.bb
mv JASPAR2024_hg38.bb JASPAR2024.bb
ln -s JASPAR2024.bb /gbdb/hg38/jaspar/JASPAR2024.bb