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# FANTOM5 refs #21605 (2023-06-09 Gerardo)
cd /hive/data/outside/
mkdir fantom5
cd fantom5
hubClone -download https://fantom.gsc.riken.jp/5/datahub/hub.txt
cd /gbdb/hg38
mkdir fantom5
cd fantom5
# Making symlinks for big files
for file in $(ls /hive/data/outside/fantom5/riken_f5/hg38/*.b*) ; do ln -s $file; done
cd /hive/data/outside/fantom5/riken_f5/hg38/
cp trackDb.txt fantom5.ra
vi fantom5.ra
# Indented subtracks
# Changing bigDataUrl
# Removing non-alpha characters
cd ~/kent/src/hg/makeDb/trackDb/human/hg38
cp /hive/data/outside/fantom5/riken_f5/hg38/fantom5.ra .
vi trackDb.ra
#include fantom5.ra alpha