# CADD track, #18492, from CADD track hub
Thu Dec  5 06:15:48 PST 2019 (max)
mkdir -p /hive/data/genomes/{hg19,hg38}/bed/cadd/
cd /hive/data/genomes/hg38/bed/cadd
wget https://krishna.gs.washington.edu/download/CADD/v1.6/GRCh38/whole_genome_SNVs.tsv.gz
wget https://krishna.gs.washington.edu/download/CADD/v1.6/GRCh38/gnomad.genomes.r3.0.indel.tsv.gz
time python ~/kent/src/hg/makeDb/cadd/caddToWig.py
time python ~/kent/src/hg/makeDb/cadd/caddToBed.py gnomad.genomes.r3.0.indel.tsv.gz
bedSort del.bed del.bed
bedSort ins.bed ins.bed
bedToBigBed del.bed ../../chrom.sizes del.bb -type=bed9+ -tab -as=${HOME}/kent/src/hg/makeDb/cadd/cadd.as &
bedToBigBed ins.bed ../../chrom.sizes ins.bb -type=bed9+ -tab -as=${HOME}/kent/src/hg/makeDb/cadd/cadd.as &
wigToBigWig a.wig ../../chrom.sizes a.bw &
wigToBigWig c.wig ../../chrom.sizes c.bw &
wigToBigWig g.wig ../../chrom.sizes g.bw &
wigToBigWig t.wig ../../chrom.sizes t.bw &
# make sure that no error occured by checking the bw/bb files