# UCSC db reference to source FTP site for genome assembly
ailMel1	ftp://ftp.ncbi.nlm.nih.gov:genbank/genomes/Eukaryotes/vertebrates_mammals/Ailuropoda_melanoleuca/AilMel_1.0/
ailMis1	none
ancCey1	ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Ancylostoma_ceylanicum/all_assembly_versions/GCA_000688135.1_Acey_2013.11.30.genDNA/
anoCar1	ftp://ftp.broad.mit.edu/pub/assemblies/reptiles/lizard/AnoCar1.0/
anoCar2	ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anolis_carolinensis/
ascSuu1	ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Ascaris_suum/all_assembly_versions/GCA_000298755.1_AscSuum_1.0/
bosTau4	http://www.hgsc.bcm.tmc.edu/project-species-m-Bovine.hgsc?pageLocation=Bovine
bosTau7	http://www.ncbi.nlm.nih.gov/genome/82
bosTau8	http://www.ncbi.nlm.nih.gov/assembly/189361
braFlo2	http://www.ncbi.nlm.nih.gov/bioproject/20249
braFlo1	ftp://ftp.jgi-psf.org/pub/JGI_data/Branchiostoma_floridae/v1.0/
bruMal1	http://www.wormbase.org/species/b_malayi
bruMal2	ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJNA10729/
burXyl1	ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJEA64437/
caeAng1	ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/invertebrates/Caenorhabditis_sp_PS1010/ps1010rel4/
caeAng2	ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJNA51225/
caeJap3	http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABLE03
caeJap4	ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Caenorhabditis_japonica/all_assembly_versions/GCA_000147155.1_C_japonica-7.0.1/
caePb2	ftp://genome.wustl.edu/pub/organism/Invertebrates/Caenorhabditis_PB2801/assembly/Caenorhabditis_PB2801-6.0.1/
caePb3	ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Caenorhabditis_brenneri/all_assembly_versions/GCA_000143925.2_C_brenneri-6.0.1b/
caeSp51	ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJNA194557/
caeSp71	ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/invertebrates/Caenorhabditis_sp_7_MAF_2007/Caenorhabditis_sp7_JU1286-4.0.1/
caeSp91	ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/invertebrates/Caenorhabditis_sp_9_MAF_2010/Caenorhabditis_sp9_JU1422-3.0.1/
caeSp111	ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Caenorhabditis_sp._11_KK-2011/all_assembly_versions/GCA_000186765.1_Caenorhabditis_sp11_JU1373-3.0.1/
caeRem3	ftp://genome.wustl.edu/pub/organism/Invertebrates/Caenorhabditis_remanei/assembly/Caenorhabditis_remanei-15.0.1/
caeRem4	ftp://ftp.sanger.ac.uk/pub/wormbase/WS220/genomes/c_remanei/
calJac1	http://genome.wustl.edu/genomes/view/callithrix_jacchus/
calJac3	http://genome.wustl.edu/genomes/view/callithrix_jacchus/
canFam2	http://www.broadinstitute.org/mammals/dog
canFam3	http://www.ncbi.nlm.nih.gov/genome/85
cavPor3	http://www.ncbi.nlm.nih.gov/genome/assembly/304568/
cb3	http://genome.wustl.edu/pub/organism/Invertebrates/Caenorhabditis_briggsae/assembly/draft/Caenorhabditis_briggsae-1.0/
cb4	ftp://ftp.sanger.ac.uk/pub/wormbase/WS225/genomes/c_briggsae/
ce9	ftp://ftp.sanger.ac.uk/pub/wormbase/WS210/genomes/c_elegans/
ce10	ftp://ftp.sanger.ac.uk/pub/wormbase/WS220/genomes/c_elegans/
ce11	ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Caenorhabditis_elegans/all_assembly_versions/GCA_000002985.3_WBcel235/
chlSab2	http://www.ncbi.nlm.nih.gov/bioproject/PRJNA168621
choHof1	http://genome.wustl.edu/genomes/view/choloepus_hoffmanni/
chrPic1	http://www.ncbi.nlm.nih.gov/genome/12107
chrPic2	http://www.ncbi.nlm.nih.gov/assembly/GCA_000241765.2
croPor1	none
danRer6	http://www.sanger.ac.uk/Projects/D_rerio/Zv8_assembly_information.shtml
danRer7	ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Danio_rerio/Zv9/
danRer10	http://www.ncbi.nlm.nih.gov/assembly/GCF_000002035.5
dasNov2	ftp://ftp.broad.mit.edu/pub/assemblies/mammals/armadillo/dasNov2/
dasNov3	http://www.ncbi.nlm.nih.gov/bioproject/12594
dipOrd1	ftp://ftp.broad.mit.edu/pub/assemblies/mammals/kangarooRat/Dipord1.0/
dirImm1	ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJEB1797/
echTel1	ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tenrec/echTel1/
equCab2	http://www.ncbi.nlm.nih.gov/genome/assembly/286598/
eriEur1	ftp://ftp.broad.mit.edu/pub/assemblies/mammals/hedgehog/eriEur1/
felCat3	ftp://ftp.broad.mit.edu/pub/assemblies/mammals/cat/felCat3/
felCat4	ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Felis_catus/catChr4/
felCat5	http://www.ncbi.nlm.nih.gov/bioproject/16726
felCat8	ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Felis_catus/all_assembly_versions/GCA_000181335.3_Felis_catus_8.0/
fr3	http://www.fugu-sg.org/
fr2	http://genome.jgi-psf.org/Takru4/Takru4.info.html
gadMor1	http://www.ncbi.nlm.nih.gov/genome/2661
galGal3	http://genome.wustl.edu/pub/organism/Other_Vertebrates/Gallus_gallus/assembly/Gallus_gallus-3.0/
galGal4	http://www.ncbi.nlm.nih.gov/genome/111
gasAcu1	ftp://ftp.broadinstitute.org/pub/assemblies/fish/stickleback/gasAcu1/
geoFor1	http://www.ncbi.nlm.nih.gov/bioproject/156703
gorGor1	http://www.sanger.ac.uk/Info/Statistics/
gorGor2	ftp://ftp.sanger.ac.uk/pub/rd/gorilla/release2/
gorGor3	ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Gorilla_gorilla/gorGor3.1/
haeCon1	http://www.wormbase.org/species/h_contortus
haeCon2	ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJEB506/
hetBac1	ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Heterorhabditis_bacteriophora/all_assembly_versions/GCA_000223415.1_Heterorhabditis_bacteriophora-7.0/
hetGla1	http://www.ncbi.nlm.nih.gov/bioproject/68323
hetGla2	http://www.ncbi.nlm.nih.gov/bioproject/72441
hg18	http://www.ncbi.nlm.nih.gov/genome/guide/human/release_notes.html#b36
hg19	http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/data/index.shtml
latCha1	http://www.ncbi.nlm.nih.gov/bioproject/56111
loaLoa1	ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Loa_loa/all_assembly_versions/GCA_000183805.3_Loa_loa_V3.1/
loxAfr3	http://www.broadinstitute.org/science/projects/mammals-models/elephant/elephant
macEug1	ftp://ftp.hgsc.bcm.tmc.edu/pub/data/Meugenii/fasta/Meug20071125/
macEug2	http://www.ncbi.nlm.nih.gov/genome/233
melGal1	ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Meleagris_gallopavo/Turkey_2.01/
melHap1	ftp://ftp.sanger.ac.uk/pub/wormbase/WS210/genomes/m_hapla/
melInc1	ftp://ftp.sanger.ac.uk/pub/wormbase/WS210/genomes/m_incognita/
melInc2	ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJEA28837/
melUnd1	http://www.ncbi.nlm.nih.gov/genome/10765
micMur1	http://www.broadinstitute.org/ftp/pub/assemblies/mammals/mouseLemur/MicMur1.0/
mm8	http://www.ncbi.nlm.nih.gov/mapview/stats/BuildStats.cgi?taxid=10090&build=36&ver=1
mm9	http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/mouse/index.shtml
mm10	http://www.ncbi.nlm.nih.gov/genome/assembly/327618/
monDom4	ftp://ftp.broad.mit.edu/distribution/assemblies/mammals/monodelphis/monDom4/
monDom5	http://www.broadinstitute.org/mammals/opossum
musFur1	http://www.ncbi.nlm.nih.gov/assembly/GCA_000215625.1
myoLuc1	ftp://ftp.broad.mit.edu/pub/assemblies/mammals/microbat/myoLuc1/
myoLuc2	http://www.ncbi.nlm.nih.gov/genome/614
nasLar1	http://www.ncbi.nlm.nih.gov/bioproject/PRJNA241312
necAme1	ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Necator_americanus/all_assembly_versions/GCA_000507365.1_N_americanus_v1/
nomLeu1	ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Nomascus_leucogenys/Nleu1.0/
nomLeu2	http://www.ncbi.nlm.nih.gov/bioproject/13975
ochPri2	http://www.ncbi.nlm.nih.gov/genome/771
oncVol1	ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Onchocerca_volvulus/all_assembly_versions/GCA_000499405.1_OVOC001/
oreNil1	ftp://ftp.broadinstitute.org/pub/assemblies/fish/tilapia/Orenil1/
oreNil2	http://www.ncbi.nlm.nih.gov/bioproject/59571
ornAna1	http://www.ncbi.nlm.nih.gov/genome/110
oryCun2	ftp://ftp.broad.mit.edu/pub/assemblies/mammals/rabbit/oryCun2/
oryLat2	http://dolphin.lab.nig.ac.jp/medaka/index.php
oryLat1	http://www.ncbi.nlm.nih.gov/assembly/175178/
otoGar1	http://www.broadinstitute.org/ftp/pub/assemblies/mammals/bushbaby/otoGar1/
otoGar3	http://www.ncbi.nlm.nih.gov/genome/assembly/249878/
oviAri1	http://www.ncbi.nlm.nih.gov/genome/83
panPan1	http://www.ncbi.nlm.nih.gov/bioproject/49285
panRed1	ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJNA186477/
panTro2	http://genome.wustl.edu/genomes/view/pan_troglodytes/
panTro3	http://genome.wustl.edu/genomes/view/pan_troglodytes/
panTro4	http://www.ncbi.nlm.nih.gov/bioproject/10627
papAnu2	http://www.ncbi.nlm.nih.gov/bioproject/54005
papHam1	http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas
petMar2	http://www.ncbi.nlm.nih.gov/bioproject/12880
petMar1	ftp://genome.wustl.edu/pub/organism/Other_Vertebrates/Petromyzon_marinus/assembly/Petromyzon_marinus-3.0/
ponAbe2	http://genome.wustl.edu/genomes/view/pongo_abelii/
priExs1	ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJEB6009/
priPac2	http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABKE
priPac3	ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJNA12644/
proCap1	http://www.ncbi.nlm.nih.gov/genome/2488
pteVam1	ftp://ftp.broad.mit.edu/pub/assemblies/mammals/megabat/Ptevap1.0/
rheMac2	http://www.hgsc.bcm.tmc.edu/project-species-p-Rhesus%20Macaque.hgsc?pageLocation=Rhesus%20Macaque
rheMac3	http://www.ncbi.nlm.nih.gov/genome/assembly/310688/
rhiRox1	http://www.ncbi.nlm.nih.gov/bioproject/PRJNA266995
rn4	http://www.hgsc.bcm.tmc.edu/project-species-m-Rat.hgsc?pageLocation=Rat
rn5	http://www.ncbi.nlm.nih.gov/bioproject/16219
rn6	http://www.ncbi.nlm.nih.gov/assembly/GCA_000001895.4
saiBol1	http://www.ncbi.nlm.nih.gov/bioproject/67945
sarHar1	http://www.ncbi.nlm.nih.gov/genome/3066
sorAra1	ftp://ftp.broad.mit.edu/pub/assemblies/mammals/commonShrew/sorAra1/
speTri1	ftp://ftp.broad.mit.edu/pub/assemblies/mammals/squirrel/speTri1/
speTri2	http://www.ncbi.nlm.nih.gov/genome/assembly/317808/
strRat2	ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Strongyloides_ratti/all_assembly_versions/GCA_001040885.1_S_ratti_ED321/
susScr2	http://www.ncbi.nlm.nih.gov/genome/84
susScr3	http://www.ncbi.nlm.nih.gov/bioproject/13421
taeGut1	http://www.ncbi.nlm.nih.gov/genome/367
tarSyr2	http://www.ncbi.nlm.nih.gov/bioproject/PRJNA20339
tarSyr1	ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tarsier/Tarsyr1.0/
tetNig2	http://www.genoscope.cns.fr/spip/Tetraodon-nigroviridis-a-fish-with.html
triMan1	http://www.ncbi.nlm.nih.gov/genome/10467
triSpi1	ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Trichinella_spiralis/all_assembly_versions/GCA_000181795.2_Trichinella_spiralis-3.7.1/
triSui1	ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Trichuris_suis/all_assembly_versions/GCA_000701005.1_Tsuis_adult_male_v1.0/
tupBel1	http://www.broadinstitute.org/ftp/pub/assemblies/mammals/treeShrew/tupBel1/
turTru1	ftp://ftp.broad.mit.edu/pub/assemblies/mammals/bottlenosedDolphin/Turtru1.0/
turTru2	http://www.ncbi.nlm.nih.gov/bioproject/20365
vicPac1	ftp://ftp.broad.mit.edu/pub/assemblies/mammals/alpaca/VicPac1.0/
xenTro2	http://genome.jgi-psf.org/Xentr4/Xentr4.info.html
xenTro3	ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Xenopus_tropicalis/v4.2/