/* knownToSuper.h was originally generated by the autoSql program, which also 
 * generated knownToSuper.c and knownToSuper.sql.  This header links the database and
 * the RAM representation of objects. */

/* Copyright (C) 2003 The Regents of the University of California 
 * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */

#ifndef KNOWNTOSUPER_H
#define KNOWNTOSUPER_H

#define KNOWNTOSUPER_NUM_COLS 5

struct knownToSuper
/* Map protein superfamilies to known genes */
    {
    struct knownToSuper *next;  /* Next in singly linked list. */
    char *gene;	/* Known gene ID */
    int superfamily;	/* Superfamily ID */
    int start;	/* Start of superfamily domain in protein (0 based) */
    int end;	/* End (noninclusive) of superfamily domain */
    float eVal;	/* E value of superfamily assignment */
    };

void knownToSuperStaticLoad(char **row, struct knownToSuper *ret);
/* Load a row from knownToSuper table into ret.  The contents of ret will
 * be replaced at the next call to this function. */

struct knownToSuper *knownToSuperLoad(char **row);
/* Load a knownToSuper from row fetched with select * from knownToSuper
 * from database.  Dispose of this with knownToSuperFree(). */

struct knownToSuper *knownToSuperLoadAll(char *fileName);
/* Load all knownToSuper from whitespace-separated file.
 * Dispose of this with knownToSuperFreeList(). */

struct knownToSuper *knownToSuperLoadAllByChar(char *fileName, char chopper);
/* Load all knownToSuper from chopper separated file.
 * Dispose of this with knownToSuperFreeList(). */

#define knownToSuperLoadAllByTab(a) knownToSuperLoadAllByChar(a, '\t');
/* Load all knownToSuper from tab separated file.
 * Dispose of this with knownToSuperFreeList(). */

struct knownToSuper *knownToSuperCommaIn(char **pS, struct knownToSuper *ret);
/* Create a knownToSuper out of a comma separated string. 
 * This will fill in ret if non-null, otherwise will
 * return a new knownToSuper */

void knownToSuperFree(struct knownToSuper **pEl);
/* Free a single dynamically allocated knownToSuper such as created
 * with knownToSuperLoad(). */

void knownToSuperFreeList(struct knownToSuper **pList);
/* Free a list of dynamically allocated knownToSuper's */

void knownToSuperOutput(struct knownToSuper *el, FILE *f, char sep, char lastSep);
/* Print out knownToSuper.  Separate fields with sep. Follow last field with lastSep. */

#define knownToSuperTabOut(el,f) knownToSuperOutput(el,f,'\t','\n');
/* Print out knownToSuper as a line in a tab-separated file. */

#define knownToSuperCommaOut(el,f) knownToSuperOutput(el,f,',',',');
/* Print out knownToSuper as a comma separated list including final comma. */

/* -------------------------------- End autoSql Generated Code -------------------------------- */

#endif /* KNOWNTOSUPER_H */