/* Copyright (C) 2012 The Regents of the University of California
* See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
#include "common.h"
#include "hash.h"
#include "portable.h"
#include "bed.h"
#include "htmshell.h"
#include "cart.h"
#include "hui.h"
#include "web.h"
#include "chromGraph.h"
#include "hPrint.h"
#include "hgGenome.h"
#include "trashDir.h"
static void quotedBrowserUrl(FILE *f, struct bed3 *bed, struct genoGraph *gg)
/* Print URL that will open browser at bed position with genoGraph track on */
{
fprintf(f, "\"../../cgi-bin/hgTracks?db=%s&position=%s:%d-%d&hgGenomeClick=browseRegions&%s=full\"",
database, bed->chrom, bed->chromStart+1, bed->chromEnd,
gg->name);
}
void browseRegions(struct sqlConnection *conn)
/* Put up a frame with a list of links on the left and the
* first link selected on the right. */
{
struct genoGraph *gg = ggFirstVisible();
double threshold = getThreshold();
struct bed3 *bed, *bedList = regionsOverThreshold(gg);
/* Define names of our two frames. */
char *browserFrame = "browser";
char *indexFrame = "index";
/* Write index html file. */
struct tempName indexTn;
trashDirFile(&indexTn, "hgg", "index", ".html");
FILE *f = mustOpen(indexTn.forCgi, "w");
htmStart(f, "Region Index");
fprintf(f, "");
fprintf(f, "%s
\n", gg->shortLabel);
fprintf(f, "%3.1f Mb in
\n",
0.000001*bedTotalSize((struct bed*)bedList));
fprintf(f, "%d regions > %g
\n",
slCount(bedList), threshold);
for (bed = bedList; bed != NULL; bed = bed->next)
{
fprintf(f, "", browserFrame);
fprintf(f, "%s %3.1fM to %3.1fM
",
bed->chrom, 0.000001*bed->chromStart, 0.000001*bed->chromEnd);
}
fprintf(f, "\n");
carefulClose(&f);
/* Write frames */
hPrintf("\n");
hPrintf("\n%s%s Regions >= %g\n",
getCspMetaHeader(), gg->shortLabel, threshold);
hPrintf("\n");
hPrintf("\n");
}