/* imreClone.c was originally generated by the autoSql program, which also 
 * generated imreClone.h and imreClone.sql.  This module links the database and
 * the RAM representation of objects. */

#include "common.h"
#include "linefile.h"
#include "jksql.h"
#include "imreClone.h"


void imreCloneStaticLoad(char **row, struct imreClone *ret)
/* Load a row from imreClone table into ret.  The contents of ret will
 * be replaced at the next call to this function. */
{
int sizeOne,i;
char *s;

ret->accession = row[0];
ret->cloneName = row[1];
ret->imreContig = row[2];
ret->origContig = row[3];
ret->source = row[4];
}

struct imreClone *imreCloneLoad(char **row)
/* Load a imreClone from row fetched with select * from imreClone
 * from database.  Dispose of this with imreCloneFree(). */
{
struct imreClone *ret;
int sizeOne,i;
char *s;

AllocVar(ret);
ret->accession = cloneString(row[0]);
ret->cloneName = cloneString(row[1]);
ret->imreContig = cloneString(row[2]);
ret->origContig = cloneString(row[3]);
ret->source = cloneString(row[4]);
return ret;
}

struct imreClone *imreCloneLoadAll(char *fileName) 
/* Load all imreClone from a tab-separated file.
 * Dispose of this with imreCloneFreeList(). */
{
struct imreClone *list = NULL, *el;
struct lineFile *lf = lineFileOpen(fileName, TRUE);
char *row[5];

while (lineFileRow(lf, row))
    {
    el = imreCloneLoad(row);
    slAddHead(&list, el);
    }
lineFileClose(&lf);
slReverse(&list);
return list;
}

struct imreClone *imreCloneCommaIn(char **pS, struct imreClone *ret)
/* Create a imreClone out of a comma separated string. 
 * This will fill in ret if non-null, otherwise will
 * return a new imreClone */
{
char *s = *pS;
int i;

if (ret == NULL)
    AllocVar(ret);
ret->accession = sqlStringComma(&s);
ret->cloneName = sqlStringComma(&s);
ret->imreContig = sqlStringComma(&s);
ret->origContig = sqlStringComma(&s);
ret->source = sqlStringComma(&s);
*pS = s;
return ret;
}

void imreCloneFree(struct imreClone **pEl)
/* Free a single dynamically allocated imreClone such as created
 * with imreCloneLoad(). */
{
struct imreClone *el;

if ((el = *pEl) == NULL) return;
freeMem(el->accession);
freeMem(el->cloneName);
freeMem(el->imreContig);
freeMem(el->origContig);
freeMem(el->source);
freez(pEl);
}

void imreCloneFreeList(struct imreClone **pList)
/* Free a list of dynamically allocated imreClone's */
{
struct imreClone *el, *next;

for (el = *pList; el != NULL; el = next)
    {
    next = el->next;
    imreCloneFree(&el);
    }
*pList = NULL;
}

void imreCloneOutput(struct imreClone *el, FILE *f, char sep, char lastSep) 
/* Print out imreClone.  Separate fields with sep. Follow last field with lastSep. */
{
int i;
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->accession);
if (sep == ',') fputc('"',f);
fputc(sep,f);
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->cloneName);
if (sep == ',') fputc('"',f);
fputc(sep,f);
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->imreContig);
if (sep == ',') fputc('"',f);
fputc(sep,f);
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->origContig);
if (sep == ',') fputc('"',f);
fputc(sep,f);
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->source);
if (sep == ',') fputc('"',f);
fputc(lastSep,f);
}