#!/bin/tcsh -efx cp inDir/wgEncodeHudsonalphaChipSeqPeaksA549Gr.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksA549Gr.broadPeak.gz encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1A549CtcfPcr1xDexa.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2A549CtcfPcr1xDexa.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedA549CtcfPcr1xDexa.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1A549CtcfPcr1xEtoh02.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2A549CtcfPcr1xEtoh02.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedA549CtcfPcr1xEtoh02.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1A549GrPcr1xDex500pm.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2A549GrPcr1xDex500pm.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedA549GrPcr1xDex500pm.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1A549GrPcr1xDex50nm.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2A549GrPcr1xDex50nm.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedA549GrPcr1xDex50nm.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1A549GrPcr1xDex5nm.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2A549GrPcr1xDex5nm.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedA549GrPcr1xDex5nm.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1A549Pol2.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2A549Pol2.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedA549Pol2.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1A549Pol2Pcr2xEtoh02.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2A549Pol2Pcr2xEtoh02.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedA549Pol2Pcr2xEtoh02.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1A549Usf1Pcr1xDexa.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2A549Usf1Pcr1xDexa.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedA549Usf1Pcr1xDexa.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1A549Usf1Pcr1xEtoh02.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2A549Usf1Pcr1xEtoh02.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedA549Usf1Pcr1xEtoh02.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Be2cNrsf.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Be2cNrsf.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedBe2cNrsf.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12878Batf.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12878Batf.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12878Batf.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12878Bcl11a.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12878Bcl11a.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12878Bcl11a.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12878Bcl3Pcr1xBcl3.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12878Bcl3Pcr1xBcl3.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12878Bcl3Pcr1xBcl3.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12878Ebf.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12878Ebf.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12878Ebf.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12878Egr1.narrowPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12878Egr1.narrowPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12878Egr1.narrowPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12878Gabp.narrowPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12878Gabp.narrowPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12878Gabp.narrowPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12878Irf4.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12878Irf4.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12878Irf4.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12878Nrsf.narrowPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12878Nrsf.narrowPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12878Nrsf.narrowPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12878Oct2.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12878Oct2.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12878Oct2.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12878P300.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12878P300.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12878P300.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12878Pax5c20.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12878Pax5c20.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12878Pax5c20.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12878Pax5n19.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12878Pax5n19.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12878Pax5n19.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12878Pbx3.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12878Pbx3.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12878Pbx3.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12878Pol2.narrowPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12878Pol2.narrowPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12878Pol2.narrowPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12878Pol24h8Pcr1x.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12878Pol24h8Pcr1x.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12878Pol24h8Pcr1x.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12878Pu1.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12878Pu1.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12878Pu1.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12878Sin3ak20.narrowPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12878Sin3ak20.narrowPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12878Sin3ak20.narrowPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12878Sp1Pcr1x.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12878Sp1Pcr1x.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12878Sp1Pcr1x.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12878Srf.narrowPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12878Srf.narrowPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12878Srf.narrowPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12878Taf1.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12878Taf1.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12878Taf1.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12878Tcf12.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12878Tcf12.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12878Tcf12.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12878Usf1.narrowPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12878Usf1.narrowPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12878Usf1.narrowPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12878Zbtb33.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12878Zbtb33.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12878Zbtb33.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12891Pol24h8Pcr1x.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12891Pol24h8Pcr1x.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12891Pol24h8Pcr1x.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12891Pol2Pcr1x.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12891Pol2Pcr1x.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12891Pol2Pcr1x.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12891Pou2f2Pcr1x.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12891Pou2f2Pcr1x.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12891Pou2f2Pcr1x.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12891Pu1Pcr1x.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12891Pu1Pcr1x.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12891Pu1Pcr1x.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12891Taf1Pcr1x.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12891Taf1Pcr1x.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12891Taf1Pcr1x.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12892Pol24h8Pcr1x.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12892Pol24h8Pcr1x.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12892Pol24h8Pcr1x.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12892Pol2Pcr1x.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12892Pol2Pcr1x.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12892Pol2Pcr1x.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Gm12892Taf1Pcr1x.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Gm12892Taf1Pcr1x.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedGm12892Taf1Pcr1x.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1H1hescNrsfPcr1x.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2H1hescNrsfPcr1x.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedH1hescNrsfPcr1x.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1H1hescPol24h8Pcr1x.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2H1hescPol24h8Pcr1x.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedH1hescPol24h8Pcr1x.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1H1hescPol2Pcr1x.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2H1hescPol2Pcr1x.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedH1hescPol2Pcr1x.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1H1hescTaf1Pcr1x.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2H1hescTaf1Pcr1x.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedH1hescTaf1Pcr1x.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Helas3Gabp.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Helas3Gabp.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedHelas3Gabp.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Helas3Pol2.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Helas3Pol2.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedHelas3Pol2.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Helas3Taf1Pcr1xTaf1.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Helas3Taf1Pcr1xTaf1.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedHelas3Taf1Pcr1xTaf1.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Hepg2Bhlhe40Pcr1x.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Hepg2Bhlhe40Pcr1x.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedHepg2Bhlhe40Pcr1x.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Hepg2Fosl2Pcr1x.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Hepg2Fosl2Pcr1x.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedHepg2Fosl2Pcr1x.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Hepg2Gabp.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Hepg2Gabp.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedHepg2Gabp.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Hepg2Hey1Pcr1x.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Hepg2Hey1Pcr1x.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedHepg2Hey1Pcr1x.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Hepg2Jund.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Hepg2Jund.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedHepg2Jund.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Hepg2Nrsf.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Hepg2Nrsf.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedHepg2Nrsf.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Hepg2P300.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Hepg2P300.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedHepg2P300.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Hepg2Pol2.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Hepg2Pol2.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedHepg2Pol2.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Hepg2RxraPcr1x.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Hepg2RxraPcr1x.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedHepg2RxraPcr1x.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Hepg2Sin3ak20.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Hepg2Sin3ak20.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedHepg2Sin3ak20.broadPeak cp inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Hepg2Srf.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedHepg2Srf.broadPeak.gz encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Hepg2Taf1.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Hepg2Taf1.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedHepg2Taf1.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Hepg2Usf1.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Hepg2Usf1.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedHepg2Usf1.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Hepg2Zbtb33Pcr1x.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Hepg2Zbtb33Pcr1x.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedHepg2Zbtb33Pcr1x.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1JurkatPol2Pcr2x.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2JurkatPol2Pcr2x.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedJurkatPol2Pcr2x.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1K562Egr1.narrowPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2K562Egr1.narrowPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedK562Egr1.narrowPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1K562Gabp.narrowPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2K562Gabp.narrowPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedK562Gabp.narrowPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1K562Hey1.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2K562Hey1.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedK562Hey1.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1K562Nrsf.narrowPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2K562Nrsf.narrowPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedK562Nrsf.narrowPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1K562Pol2.narrowPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2K562Pol2.narrowPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedK562Pol2.narrowPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1K562Pol24h8.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2K562Pol24h8.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedK562Pol24h8.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1K562Pu1.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2K562Pu1.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedK562Pu1.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1K562Sin3ak20.narrowPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2K562Sin3ak20.narrowPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedK562Sin3ak20.narrowPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1K562Six5.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2K562Six5.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedK562Six5.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1K562Srf.narrowPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2K562Srf.narrowPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedK562Srf.narrowPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1K562Taf1.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2K562Taf1.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedK562Taf1.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1K562Usf1.narrowPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2K562Usf1.narrowPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedK562Usf1.narrowPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Panc1Nrsf.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Panc1Nrsf.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedPanc1Nrsf.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Pfsk1Foxp2.narrowPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Pfsk1Foxp2.narrowPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedPfsk1Foxp2.narrowPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1Pfsk1Nrsf.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2Pfsk1Nrsf.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedPfsk1Nrsf.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1SknmcFoxp2.narrowPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2SknmcFoxp2.narrowPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedSknmcFoxp2.narrowPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1SknshraNrsf.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2SknshraNrsf.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedSknshraNrsf.broadPeak encodeMergeReplicates -add -maxMin -uniqueName inDir/wgEncodeHudsonalphaChipSeqPeaksRep1U87Nrsf.broadPeak.gz inDir/wgEncodeHudsonalphaChipSeqPeaksRep2U87Nrsf.broadPeak.gz outDir/wgEncodeHudsonalphaChipSeqPeaksMergedU87Nrsf.broadPeak