AC005809.6
    8.3% - T73995:9-203 (old 9-203) of 336 at AC005809.6.5:535-738
    36.5% - R60505:211-419 (old 211-426) of 445 at AC005809.6.5:1133-1339
    28.1% + AA972817:16-263 (old 16-269) of 320 at AC005809.6.5:1151-1387
Blast Masked
    no hits.
Blast Unmasked
  ~1000 hits.

AC009820.4
    no PatSpace hits.
Blast Masked
    no hits.

AC011338.6
    no PatSpace hits
Blast Masked
    no (mrna) hits.

AC012265.8
    no PatSpace hits
Blast Masked
    no (mrna) hits

AC013403.1
    no PatSpace hits
Blast Masked
    no (mrna) hits

AP000775.7
    no PatSpace hits.
Blast Masked
    no (mrna) hits

AC011479.12 (only 112 bp)
    no PatSpace hits.
Blast Masked
    no (mrna) hits


AC005809.4
    88.0% - T19435:0-209 (old 0-209) of 252 at AC005809.4.3:1442-1651
    96.8% + AJ243229:0-368 (old 0-368) of 529 at AC005809.4.3:1284-1653
    52.4% + AL043123:367-601 (old 367-610) of 627 at AC005809.4.3:319-558
    91.9% + AL117609:783-2110 (old 783-2110) of 2544 at AC005809.4.3:319-1652
Blast Masked
    gb|T19435|T19435  e08002s Testis 2 Homo sapiens cDNA clone e...   303  6e-80
    emb|AJ243229.1|AJ243229  AJ243229 Homo sapiens HTG9 Homo sap...   716  0.0
    emb|AL043123.2|AL043123  DKFZp434D0223_r1 434 (synonym: htes...   264  6e-68
    AL117609 784-2110 (mRNA)


AC009820.1
    no PatSpace hits
Blast Masked
    no (mrna) hits

AC009820.12
    20.2% - AI284084:141-193 (old 141-193) of 299 at AC009820.12.11:3829-4020
    94.5% - AI572569:168-190 (old 168-241) of 379 at AC009820.12.11:3814-3836
    26.9% - AI608667:135-178 (old 126-178) of 342 at AC009820.12.11:3829-3933
    74.8% - AI800440:160-193 (old 94-271) of 355 at AC009820.12.11:3807-3840
    58.4% - AI802654:201-233 (old 201-260) of 345 at AC009820.12.11:3819-3935
    9.0% - AI818206:181-201 (old 164-388) of 583 at AC009820.12.11:3819-3839
    40.2% - AI884469:71-88 (old 35-263) of 371 at AC009820.12.11:3817-3834
    99.0% - AI963224:158-180 (old 158-180) of 371 at AC009820.12.11:3815-3837
    31.7% - AI984205:399-448 (old 367-448) of 485 at AC009820.12.11:3821-4333
    99.0% - AW151681:0-23 (old 0-23) of 382 at AC009820.12.11:3815-3838
    99.0% + AW152186:301-313 (old 79-313) of 362 at AC009820.12.11:4258-4270
    31.4% - AW169368:186-220 (old 186-233) of 334 at AC009820.12.11:3811-3931
Blast Masked
    no hits.
Blast Unmasked
    223 hits.

AC011338.8
    319 PatSpace hits
Blast Masked
    Blast crashed !? (Error , no valid letter to be indexed.)
Blast Unmasked
    101 hits.  Top and bottom hits all in PatSpace hits.  Ends
    at expectation e-76.  (I think Blast cut off lower scoring
    hits.)

AC011338.12
    96.9% + F01322:0-333 (old 0-333) of 333 at AC011338.12.11:12252-12585
    99.0% - AA602845:27-473 (old 27-473) of 473 at AC011338.12.11:4455-4901
Blast Masked
    gb|AA602845|AA602845  np20c02.s1 NCI_CGAP_Br3 Homo sapiens c...   884  0.0
    emb|F01322|HSBC7G092  H. sapiens partial cDNA sequence; clon...   622  e-175
    gb|W22701|W22701  72A12 Human retina cDNA Tsp509I-cleaved su...   285  7e-74
         This last one revealed a bug in the routine
            int scoreCdna(struct ffAli *left, struct ffAli *right)
         which is now fixed.  This one now is found by PatSpace.
Blast Unmasked
    107 hits including F01322 and AA602845

AC012265.4
    47.7% - N76123:268-502 (old 258-502) of 502 at AC012265.4.3:239-468
    51.9% + AA360100:0-208 (old 0-208) of 235 at AC012265.4.3:200-404
    63.1% + AA528764:22-345 (old 22-345) of 357 at AC012265.4.3:156-481
    28.9% + AA640829:5-407 (old 5-421) of 426 at AC012265.4.3:367-775
    60.8% - AA708661:6-386 (old 6-386) of 390 at AC012265.4.3:573-953
Blast Masked
    ERROR: BLASTSetUpSearch: Unable to calculate Karlin-Altschul params, check
    query sequence. (Possibly RepeatMasker NNNs out whole sequence? )
Blast Unmasked
    128 hits.  

AC012265.5
    85.6% - AA299349:0-82 (old 0-82) of 282 at AC012265.5.4:3051-3132
Blast Masked
    gb|AA299349|AA299349  EST11846 Uterus tumor I Homo sapiens c...   139  2e-30

AC013403.2
    83.9% - AA457240:272-391 (old 152-391) of 452 at AC013403.2.1:1363-1482
Blast Masked
    no hits longer than 30 bases
Blast Unmasked
    134 hits.

AC013403.8
    .62.6% + H00384:8-294 (old 8-294) of 414 at AC013403.8.7:931-1624
    .61.3% + R85166:9-364 (old 9-364) of 489 at AC013403.8.7:954-1309
    .24.7% + AA053914:334-548 (old 334-548) of 696 at AC013403.8.7:676-904
    .84.4% + AL046382:375-471 (old 375-471) of 472 at AC013403.8.7:922-1018
    .86.6% - AW062921:70-183 (old 70-183) of 196 at AC013403.8.7:922-1035
    .48.7% + AL096737:965-1496 (old 965-1496) of 2310 at AC013403.8.7:676-1624
    .68.6% + AF069307:2042-2338 (old 538-2338) of 3162 at AC013403.8.7:922-1624
    .68.7% + AF081571:1864-2154 (old 568-2154) of 3016 at AC013403.8.7:928-1624
Blast Masked
    R85166|R85166  yo43c01.r1 Homo sapiens cDNA clone 180672 5'.   444  e-122
    AA053914|AA053914  zf52g05.r1 Soares retina N2b4HR Homo s...   232  2e-58
    AW062921.1|AW062921  IL3-ST0023-110899-005-D09 ST0023 Hom...   168  3e-39
    H00384|H00384  yj23h03.r1 Homo sapiens cDNA clone 149621 5'.   161  7e-37
    AA009408|AA009408  ze82g06.r1 Soares fetal heart NbHH19W ...   143  2e-31
        no 21 base solid matches
    R72960|R72960  yi38a07.r1 Homo sapiens cDNA clone 141492 5'.   139  3e-30
        no 21 base solid matches
    gb|R31846|R31846  yh69e10.r1 Homo sapiens cDNA clone 135018 5'.   139  3e-30
        no 21 base solid matches
    AL046382.1|AL046382  DKFZp434L047_r1 434 (synonym: htes3...   135  4e-29
    gb|AA018884|AA018884  ze55a10.r1 Soares retina N2b4HR Homo s...    64  1e-07
    gb|N57136|N57136  yw64e08.r1 Homo sapiens cDNA clone 257030 5'.    62  5e-07
Blast Unmasked