/* Clustering sequences in an MSA by % identity.
 * 
 * SRE, Sun Nov  5 10:08:14 2006 [Janelia]
 * SVN $Id: esl_msacluster.h 664 2011-02-27 17:08:36Z eddys $
 * SVN $URL: https://svn.janelia.org/eddylab/eddys/easel/branches/infernal/1.1/esl_msacluster.h $
 */
#ifndef eslMSACLUSTER_INCLUDED
#define eslMSACLUSTER_INCLUDED

extern int esl_msacluster_SingleLinkage(const ESL_MSA *msa, double maxid, 
					int **opt_c, int **opt_nin, int *opt_nc);

#endif /*eslMSACLUSTER_INCLUDED*/
/*****************************************************************
 * Easel - a library of C functions for biological sequence analysis
 * Version i1.1.1; July 2014
 * Copyright (C) 2014 HHMI Janelia Farm Research Campus
 * Other copyrights also apply. See the COPYRIGHT file for a full list.
 * 
 * Easel is distributed under the Janelia Farm Software License, a BSD
 * license. See the LICENSE file for more details.
 *****************************************************************/