| Name | Last modified | Size | Description | |
|---|---|---|---|---|
| Parent Directory | - | |||
| auxf#values.sam | 2016-06-17 10:40 | 751 | ||
| auxf#values_java.cram | 2016-10-20 13:38 | 5.0K | ||
| auxf.fa | 2014-12-20 14:53 | 29 | ||
| auxf.fa.fai | 2014-12-20 14:53 | 18 | ||
| bgziptest.txt | 2016-09-01 13:22 | 15 | ||
| bgziptest.txt.gz | 2016-09-01 13:22 | 181 | ||
| bgziptest.txt.gz.gzi | 2016-09-01 13:22 | 88 | ||
| c1#bounds.sam | 2013-09-20 08:58 | 148 | ||
| c1#clip.sam | 2013-07-22 11:08 | 337 | ||
| c1#noseq.sam | 2015-04-08 15:41 | 433 | ||
| c1#pad1.sam | 2013-07-22 11:08 | 388 | ||
| c1#pad2.sam | 2015-02-18 10:27 | 527 | ||
| c1#pad3.sam | 2015-02-18 10:27 | 665 | ||
| c1#unknown.sam | 2015-03-10 15:05 | 429 | ||
| c1.fa | 2013-07-22 11:08 | 15 | ||
| c1.fa.fai | 2013-07-22 11:08 | 14 | ||
| c2#pad.sam | 2015-04-29 13:55 | 847 | ||
| c2.fa | 2015-04-29 14:19 | 14 | ||
| c2.fa.fai | 2015-04-29 14:24 | 12 | ||
| ce#1.sam | 2015-02-18 10:27 | 341 | ||
| ce#2.sam | 2015-02-18 10:27 | 645 | ||
| ce#5.sam | 2015-02-18 10:27 | 1.8K | ||
| ce#5b.sam | 2015-02-18 10:27 | 1.8K | ||
| ce#5b_java.cram | 2016-03-18 14:17 | 6.6K | ||
| ce#1000.sam | 2018-03-09 11:50 | 315K | ||
| ce#large_seq.sam | 2015-02-18 10:27 | 2.0M | ||
| ce#supp.sam | 2015-04-08 16:32 | 547 | ||
| ce#tag_depadded.sam | 2015-02-18 10:27 | 1.6K | ||
| ce#tag_padded.sam | 2015-02-18 10:27 | 1.6K | ||
| ce#unmap.sam | 2013-07-22 11:08 | 1.3K | ||
| ce#unmap1.sam | 2015-02-18 10:27 | 2.7K | ||
| ce#unmap2.sam | 2015-02-18 10:27 | 5.4K | ||
| ce.fa | 2013-07-22 11:08 | 1.0M | ||
| ce.fa.fai | 2013-07-22 11:08 | 230 | ||
| colons.bam | 2018-06-07 10:50 | 268 | ||
| colons.bam.bai | 2018-06-07 10:50 | 424 | ||
| compare_sam.pl | 2019-11-19 11:20 | 6.3K | ||
| cross_validate.sh | 2019-11-19 11:20 | 4.2K | ||
| emptyfile | 2019-08-28 14:58 | 0 | ||
| faidx.fa | 2018-06-18 14:11 | 289 | ||
| fastqs.fq | 2018-05-21 14:09 | 47K | ||
| fastqs_README.txt | 2018-05-21 14:09 | 4.8K | ||
| fieldarith | 2020-07-18 19:00 | 2.5M | ||
| fieldarith.c | 2019-11-19 11:20 | 2.4K | ||
| fieldarith.o | 2020-07-18 19:00 | 18K | ||
| fieldarith.sam | 2013-10-02 10:50 | 916 | ||
| formatcols.vcf | 2016-02-04 11:35 | 240 | ||
| formatmissing-out.vcf | 2016-09-09 09:11 | 226 | ||
| formatmissing.vcf | 2016-09-09 09:11 | 226 | ||
| fuzz/ | 2020-07-18 19:00 | - | ||
| header_syms.pl | 2019-10-28 19:44 | 3.5K | ||
| hfile | 2020-07-18 19:00 | 2.5M | ||
| hfile.c | 2019-08-28 14:58 | 12K | ||
| hfile.o | 2020-07-18 19:00 | 95K | ||
| hts_endian | 2020-07-18 19:00 | 35K | ||
| hts_endian.c | 2018-07-04 13:32 | 17K | ||
| hts_endian.o | 2020-07-18 19:00 | 65K | ||
| index.bam.bai | 2019-01-30 14:48 | 776 | ||
| index.bam.csi | 2019-01-30 14:48 | 130 | ||
| index.bcf.csi | 2018-06-20 13:11 | 144 | ||
| index.cram.crai | 2019-01-30 14:48 | 83 | ||
| index.sam | 2019-01-30 14:48 | 53K | ||
| index.sam.gz.bai | 2019-01-30 14:48 | 776 | ||
| index.sam.gz.csi | 2019-01-30 14:48 | 130 | ||
| index.vcf | 2018-06-20 13:11 | 67K | ||
| index.vcf.gz.csi | 2018-06-20 13:11 | 159 | ||
| index.vcf.gz.tbi | 2018-06-20 13:11 | 213 | ||
| longrefs/ | 2019-12-19 09:54 | - | ||
| maintainer/ | 2019-12-19 09:54 | - | ||
| md#1.sam | 2016-05-20 13:59 | 1.0K | ||
| md.fa | 2016-05-20 13:59 | 45 | ||
| md.fa.fai | 2016-05-20 13:59 | 13 | ||
| mpileup/ | 2019-12-19 09:54 | - | ||
| no_hdr_sq_1.bam | 2019-07-04 15:43 | 1.7K | ||
| no_hdr_sq_1.bam.csi | 2019-07-04 15:43 | 94 | ||
| no_hdr_sq_1.expected.sam | 2019-07-04 15:43 | 2.0K | ||
| noroundtrip-out.vcf | 2016-03-30 12:05 | 325 | ||
| noroundtrip.vcf | 2016-03-30 12:05 | 271 | ||
| pileup | 2020-07-18 19:00 | 2.5M | ||
| pileup.c | 2019-11-19 11:20 | 6.8K | ||
| pileup.o | 2020-07-18 19:00 | 35K | ||
| range.bam | 2018-01-31 12:22 | 13K | ||
| range.bam.bai | 2018-01-31 12:22 | 360 | ||
| range.cram | 2018-01-31 12:22 | 11K | ||
| range.cram.crai | 2018-01-31 12:22 | 94 | ||
| range.out | 2018-01-31 12:22 | 3.4K | ||
| realn01.fa | 2018-02-09 10:23 | 719 | ||
| realn01.fa.fai | 2018-02-09 10:23 | 21 | ||
| realn01.sam | 2018-02-09 10:23 | 1.8K | ||
| realn01_exp-a.sam | 2018-02-09 10:23 | 2.1K | ||
| realn01_exp-e.sam | 2018-02-09 10:23 | 2.1K | ||
| realn01_exp.sam | 2018-02-09 10:23 | 2.1K | ||
| realn02-r.sam | 2018-02-09 10:23 | 3.7K | ||
| realn02.fa | 2018-02-09 10:23 | 4.2K | ||
| realn02.fa.fai | 2018-02-09 10:23 | 17 | ||
| realn02.sam | 2018-02-09 10:23 | 2.8K | ||
| realn02_exp-a.sam | 2018-02-09 10:23 | 3.7K | ||
| realn02_exp-e.sam | 2018-02-09 10:23 | 3.7K | ||
| realn02_exp.sam | 2018-02-09 10:23 | 3.7K | ||
| sam | 2020-07-18 19:00 | 2.6M | ||
| sam.c | 2019-11-18 14:44 | 62K | ||
| sam.o | 2020-07-18 19:00 | 265K | ||
| simple_test_driver.sh | 2019-11-19 11:20 | 5.5K | ||
| tabix.out | 2019-04-18 15:36 | 98 | ||
| tabix/ | 2019-12-19 09:54 | - | ||
| test-bcf-sr | 2020-07-18 19:00 | 3.1M | ||
| test-bcf-sr.c | 2018-06-05 14:07 | 4.8K | ||
| test-bcf-sr.o | 2020-07-18 19:00 | 55K | ||
| test-bcf-sr.pl | 2019-11-19 11:20 | 17K | ||
| test-bcf-translate | 2020-07-18 19:00 | 2.9M | ||
| test-bcf-translate.c | 2019-11-19 11:20 | 8.7K | ||
| test-bcf-translate.o | 2020-07-18 19:00 | 30K | ||
| test-bcf-translate.out | 2017-08-29 09:56 | 869 | ||
| test-logging.pl | 2017-05-14 21:20 | 2.5K | ||
| test-parse-reg | 2020-07-18 19:00 | 2.5M | ||
| test-parse-reg.c | 2019-11-19 11:20 | 6.9K | ||
| test-parse-reg.o | 2020-07-18 19:00 | 35K | ||
| test-regidx | 2020-07-18 19:00 | 2.6M | ||
| test-regidx.c | 2019-11-06 11:28 | 16K | ||
| test-regidx.o | 2020-07-18 19:00 | 82K | ||
| test-vcf-api | 2020-07-18 19:00 | 3.0M | ||
| test-vcf-api.c | 2019-11-19 11:20 | 18K | ||
| test-vcf-api.o | 2020-07-18 19:00 | 102K | ||
| test-vcf-api.out | 2019-04-10 11:40 | 2.0K | ||
| test-vcf-hdr-in.vcf | 2016-03-24 11:32 | 2.0K | ||
| test-vcf-hdr.out | 2016-03-24 11:32 | 1.3K | ||
| test-vcf-sweep | 2020-07-18 19:00 | 3.0M | ||
| test-vcf-sweep.c | 2019-11-19 11:20 | 3.7K | ||
| test-vcf-sweep.o | 2020-07-18 19:00 | 18K | ||
| test-vcf-sweep.out | 2013-09-05 09:41 | 92 | ||
| test.pl | 2019-12-10 17:59 | 35K | ||
| test_bgzf | 2020-07-18 19:00 | 2.5M | ||
| test_bgzf.c | 2019-11-19 11:20 | 31K | ||
| test_bgzf.o | 2020-07-18 19:00 | 132K | ||
| test_index | 2020-07-18 19:00 | 2.9M | ||
| test_index.c | 2018-06-22 08:37 | 2.8K | ||
| test_index.o | 2020-07-18 19:00 | 18K | ||
| test_kstring | 2020-07-18 19:00 | 31K | ||
| test_kstring.c | 2019-04-17 17:37 | 5.6K | ||
| test_kstring.o | 2020-07-18 19:00 | 54K | ||
| test_realn | 2020-07-18 19:00 | 2.5M | ||
| test_realn.c | 2019-06-30 11:43 | 4.9K | ||
| test_realn.o | 2020-07-18 19:00 | 32K | ||
| test_str2int | 2020-07-18 19:00 | 27K | ||
| test_str2int.c | 2019-01-07 14:11 | 5.9K | ||
| test_str2int.o | 2020-07-18 19:00 | 47K | ||
| test_view | 2020-07-18 19:00 | 3.0M | ||
| test_view.c | 2019-11-19 11:20 | 14K | ||
| test_view.o | 2020-07-18 19:00 | 100K | ||
| thrash_threads1.c | 2017-02-07 15:25 | 1.6K | ||
| thrash_threads2.c | 2017-02-07 15:25 | 1.6K | ||
| thrash_threads3.c | 2017-02-08 16:31 | 1.7K | ||
| thrash_threads4.c | 2017-02-07 15:25 | 2.2K | ||
| thrash_threads5.c | 2017-02-07 15:25 | 2.1K | ||
| thrash_threads6.c | 2017-02-08 16:31 | 3.3K | ||
| thrash_threads7.c | 2019-11-19 11:20 | 3.6K | ||
| thread_pool.md | 2017-03-03 19:48 | 2.9K | ||
| xx#MD.sam | 2018-11-07 11:03 | 1.0K | ||
| xx#MD2.sam | 2018-11-07 11:03 | 1.1K | ||
| xx#blank.sam | 2019-08-28 14:58 | 71 | ||
| xx#large_aux.sam | 2013-07-22 11:08 | 884K | ||
| xx#large_aux2.sam | 2013-07-22 11:08 | 651 | ||
| xx#large_aux_java.cram | 2016-03-18 14:17 | 22K | ||
| xx#minimal.sam | 2013-07-22 11:08 | 254 | ||
| xx#pair.sam | 2013-07-22 11:08 | 304 | ||
| xx#repeated.sam | 2016-01-14 12:15 | 298 | ||
| xx#rg.sam | 2013-07-22 11:08 | 517 | ||
| xx#tlen.sam | 2015-04-29 13:55 | 1.0K | ||
| xx#tlen2.sam | 2015-04-29 13:55 | 1.1K | ||
| xx#triplet.sam | 2013-07-22 11:08 | 267 | ||
| xx#unsorted.sam | 2013-07-22 11:08 | 320 | ||
| xx.fa | 2018-11-07 11:03 | 86 | ||
| xx.fa.fai | 2018-11-07 11:03 | 44 | ||