/* Generated by Cython 3.2.4 */ #ifndef PY_SSIZE_T_CLEAN #define PY_SSIZE_T_CLEAN #endif /* PY_SSIZE_T_CLEAN */ /* InitLimitedAPI */ #if defined(Py_LIMITED_API) #if !defined(CYTHON_LIMITED_API) #define CYTHON_LIMITED_API 1 #endif #elif defined(CYTHON_LIMITED_API) #ifdef _MSC_VER #pragma message ("Limited API usage is enabled with 'CYTHON_LIMITED_API' but 'Py_LIMITED_API' does not define a Python target version. Consider setting 'Py_LIMITED_API' instead.") #else #warning Limited API usage is enabled with 'CYTHON_LIMITED_API' but 'Py_LIMITED_API' does not define a Python target version. Consider setting 'Py_LIMITED_API' instead. #endif #endif #include "Python.h" #ifndef Py_PYTHON_H #error Python headers needed to compile C extensions, please install development version of Python. #elif PY_VERSION_HEX < 0x03080000 #error Cython requires Python 3.8+. #else #define __PYX_ABI_VERSION "3_2_4" #define CYTHON_HEX_VERSION 0x030204F0 #define CYTHON_FUTURE_DIVISION 1 /* CModulePreamble */ #include #ifndef offsetof #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) #endif #if !defined(_WIN32) && !defined(WIN32) && !defined(MS_WINDOWS) #ifndef __stdcall #define __stdcall #endif #ifndef __cdecl #define __cdecl #endif #ifndef __fastcall #define __fastcall #endif #endif #ifndef DL_IMPORT #define DL_IMPORT(t) t #endif #ifndef DL_EXPORT #define DL_EXPORT(t) t #endif #define __PYX_COMMA , #ifndef PY_LONG_LONG #define PY_LONG_LONG LONG_LONG #endif #ifndef Py_HUGE_VAL #define Py_HUGE_VAL HUGE_VAL #endif #define __PYX_LIMITED_VERSION_HEX PY_VERSION_HEX #if defined(GRAALVM_PYTHON) /* For very preliminary testing purposes. Most variables are set the same as PyPy. The existence of this section does not imply that anything works or is even tested */ #define CYTHON_COMPILING_IN_PYPY 0 #define CYTHON_COMPILING_IN_CPYTHON 0 #define CYTHON_COMPILING_IN_LIMITED_API 0 #define CYTHON_COMPILING_IN_GRAAL 1 #define CYTHON_COMPILING_IN_CPYTHON_FREETHREADING 0 #undef CYTHON_USE_TYPE_SLOTS #define CYTHON_USE_TYPE_SLOTS 0 #undef CYTHON_USE_TYPE_SPECS #define CYTHON_USE_TYPE_SPECS 0 #undef CYTHON_USE_PYTYPE_LOOKUP #define CYTHON_USE_PYTYPE_LOOKUP 0 #undef CYTHON_USE_PYLIST_INTERNALS #define CYTHON_USE_PYLIST_INTERNALS 0 #undef CYTHON_USE_UNICODE_INTERNALS #define CYTHON_USE_UNICODE_INTERNALS 0 #undef CYTHON_USE_UNICODE_WRITER #define CYTHON_USE_UNICODE_WRITER 0 #undef CYTHON_USE_PYLONG_INTERNALS #define CYTHON_USE_PYLONG_INTERNALS 0 #undef CYTHON_AVOID_BORROWED_REFS #define CYTHON_AVOID_BORROWED_REFS 1 #undef CYTHON_AVOID_THREAD_UNSAFE_BORROWED_REFS #define CYTHON_AVOID_THREAD_UNSAFE_BORROWED_REFS 0 #undef CYTHON_ASSUME_SAFE_MACROS #define CYTHON_ASSUME_SAFE_MACROS 0 #undef CYTHON_ASSUME_SAFE_SIZE #define CYTHON_ASSUME_SAFE_SIZE 0 #undef CYTHON_UNPACK_METHODS #define CYTHON_UNPACK_METHODS 0 #undef CYTHON_FAST_THREAD_STATE #define CYTHON_FAST_THREAD_STATE 0 #undef CYTHON_FAST_GIL #define CYTHON_FAST_GIL 0 #undef CYTHON_METH_FASTCALL #define CYTHON_METH_FASTCALL 0 #undef CYTHON_FAST_PYCALL #define CYTHON_FAST_PYCALL 0 #ifndef CYTHON_PEP487_INIT_SUBCLASS #define CYTHON_PEP487_INIT_SUBCLASS 1 #endif #undef CYTHON_PEP489_MULTI_PHASE_INIT #define CYTHON_PEP489_MULTI_PHASE_INIT 1 #undef CYTHON_USE_MODULE_STATE #define CYTHON_USE_MODULE_STATE 0 #undef CYTHON_USE_SYS_MONITORING #define CYTHON_USE_SYS_MONITORING 0 #undef CYTHON_USE_TP_FINALIZE #define CYTHON_USE_TP_FINALIZE 0 #undef CYTHON_USE_AM_SEND #define CYTHON_USE_AM_SEND 0 #undef CYTHON_USE_DICT_VERSIONS #define CYTHON_USE_DICT_VERSIONS 0 #undef CYTHON_USE_EXC_INFO_STACK #define CYTHON_USE_EXC_INFO_STACK 1 #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC #define CYTHON_UPDATE_DESCRIPTOR_DOC 0 #endif #undef CYTHON_USE_FREELISTS #define CYTHON_USE_FREELISTS 0 #undef CYTHON_IMMORTAL_CONSTANTS #define CYTHON_IMMORTAL_CONSTANTS 0 #elif defined(PYPY_VERSION) #define CYTHON_COMPILING_IN_PYPY 1 #define CYTHON_COMPILING_IN_CPYTHON 0 #define CYTHON_COMPILING_IN_LIMITED_API 0 #define CYTHON_COMPILING_IN_GRAAL 0 #define CYTHON_COMPILING_IN_CPYTHON_FREETHREADING 0 #undef CYTHON_USE_TYPE_SLOTS #define CYTHON_USE_TYPE_SLOTS 1 #ifndef CYTHON_USE_TYPE_SPECS #define CYTHON_USE_TYPE_SPECS 0 #endif #undef CYTHON_USE_PYTYPE_LOOKUP #define CYTHON_USE_PYTYPE_LOOKUP 0 #undef CYTHON_USE_PYLIST_INTERNALS #define CYTHON_USE_PYLIST_INTERNALS 0 #undef CYTHON_USE_UNICODE_INTERNALS #define CYTHON_USE_UNICODE_INTERNALS 0 #undef CYTHON_USE_UNICODE_WRITER #define CYTHON_USE_UNICODE_WRITER 0 #undef CYTHON_USE_PYLONG_INTERNALS #define CYTHON_USE_PYLONG_INTERNALS 0 #undef CYTHON_AVOID_BORROWED_REFS #define CYTHON_AVOID_BORROWED_REFS 1 #undef CYTHON_AVOID_THREAD_UNSAFE_BORROWED_REFS #define CYTHON_AVOID_THREAD_UNSAFE_BORROWED_REFS 1 #undef CYTHON_ASSUME_SAFE_MACROS #define CYTHON_ASSUME_SAFE_MACROS 0 #ifndef CYTHON_ASSUME_SAFE_SIZE #define CYTHON_ASSUME_SAFE_SIZE 1 #endif #undef CYTHON_UNPACK_METHODS #define CYTHON_UNPACK_METHODS 0 #undef CYTHON_FAST_THREAD_STATE #define CYTHON_FAST_THREAD_STATE 0 #undef CYTHON_FAST_GIL #define CYTHON_FAST_GIL 0 #undef CYTHON_METH_FASTCALL #define CYTHON_METH_FASTCALL 0 #undef CYTHON_FAST_PYCALL #define CYTHON_FAST_PYCALL 0 #ifndef CYTHON_PEP487_INIT_SUBCLASS #define CYTHON_PEP487_INIT_SUBCLASS 1 #endif #if PY_VERSION_HEX < 0x03090000 #undef CYTHON_PEP489_MULTI_PHASE_INIT #define CYTHON_PEP489_MULTI_PHASE_INIT 0 #elif !defined(CYTHON_PEP489_MULTI_PHASE_INIT) #define CYTHON_PEP489_MULTI_PHASE_INIT 1 #endif #undef CYTHON_USE_MODULE_STATE #define CYTHON_USE_MODULE_STATE 0 #undef CYTHON_USE_SYS_MONITORING #define CYTHON_USE_SYS_MONITORING 0 #ifndef CYTHON_USE_TP_FINALIZE #define CYTHON_USE_TP_FINALIZE (PYPY_VERSION_NUM >= 0x07030C00) #endif #undef CYTHON_USE_AM_SEND #define CYTHON_USE_AM_SEND 0 #undef CYTHON_USE_DICT_VERSIONS #define CYTHON_USE_DICT_VERSIONS 0 #undef CYTHON_USE_EXC_INFO_STACK #define CYTHON_USE_EXC_INFO_STACK 0 #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC #define CYTHON_UPDATE_DESCRIPTOR_DOC (PYPY_VERSION_NUM >= 0x07031100) #endif #undef CYTHON_USE_FREELISTS #define CYTHON_USE_FREELISTS 0 #undef CYTHON_IMMORTAL_CONSTANTS #define CYTHON_IMMORTAL_CONSTANTS 0 #elif defined(CYTHON_LIMITED_API) #ifdef Py_LIMITED_API #undef __PYX_LIMITED_VERSION_HEX #define __PYX_LIMITED_VERSION_HEX Py_LIMITED_API #endif #define CYTHON_COMPILING_IN_PYPY 0 #define CYTHON_COMPILING_IN_CPYTHON 0 #define CYTHON_COMPILING_IN_LIMITED_API 1 #define CYTHON_COMPILING_IN_GRAAL 0 #define CYTHON_COMPILING_IN_CPYTHON_FREETHREADING 0 #undef CYTHON_USE_TYPE_SLOTS #define CYTHON_USE_TYPE_SLOTS 0 #undef CYTHON_USE_TYPE_SPECS #define CYTHON_USE_TYPE_SPECS 1 #undef CYTHON_USE_PYTYPE_LOOKUP #define CYTHON_USE_PYTYPE_LOOKUP 0 #undef CYTHON_USE_PYLIST_INTERNALS #define CYTHON_USE_PYLIST_INTERNALS 0 #undef CYTHON_USE_UNICODE_INTERNALS #define CYTHON_USE_UNICODE_INTERNALS 0 #ifndef CYTHON_USE_UNICODE_WRITER #define CYTHON_USE_UNICODE_WRITER 0 #endif #undef CYTHON_USE_PYLONG_INTERNALS #define CYTHON_USE_PYLONG_INTERNALS 0 #ifndef CYTHON_AVOID_BORROWED_REFS #define CYTHON_AVOID_BORROWED_REFS 0 #endif #ifndef CYTHON_AVOID_THREAD_UNSAFE_BORROWED_REFS #define CYTHON_AVOID_THREAD_UNSAFE_BORROWED_REFS 0 #endif #undef CYTHON_ASSUME_SAFE_MACROS #define CYTHON_ASSUME_SAFE_MACROS 0 #undef CYTHON_ASSUME_SAFE_SIZE #define CYTHON_ASSUME_SAFE_SIZE 0 #undef CYTHON_UNPACK_METHODS #define CYTHON_UNPACK_METHODS 0 #undef CYTHON_FAST_THREAD_STATE #define CYTHON_FAST_THREAD_STATE 0 #undef CYTHON_FAST_GIL #define CYTHON_FAST_GIL 0 #undef CYTHON_METH_FASTCALL #define CYTHON_METH_FASTCALL (__PYX_LIMITED_VERSION_HEX >= 0x030C0000) #undef CYTHON_FAST_PYCALL #define CYTHON_FAST_PYCALL 0 #ifndef CYTHON_PEP487_INIT_SUBCLASS #define CYTHON_PEP487_INIT_SUBCLASS 1 #endif #ifndef CYTHON_PEP489_MULTI_PHASE_INIT #define CYTHON_PEP489_MULTI_PHASE_INIT 1 #endif #ifndef CYTHON_USE_MODULE_STATE #define CYTHON_USE_MODULE_STATE 0 #endif #undef CYTHON_USE_SYS_MONITORING #define CYTHON_USE_SYS_MONITORING 0 #ifndef CYTHON_USE_TP_FINALIZE #define CYTHON_USE_TP_FINALIZE 0 #endif #ifndef CYTHON_USE_AM_SEND #define CYTHON_USE_AM_SEND (__PYX_LIMITED_VERSION_HEX >= 0x030A0000) #endif #undef CYTHON_USE_DICT_VERSIONS #define CYTHON_USE_DICT_VERSIONS 0 #undef CYTHON_USE_EXC_INFO_STACK #define CYTHON_USE_EXC_INFO_STACK 0 #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC #define CYTHON_UPDATE_DESCRIPTOR_DOC 0 #endif #ifndef CYTHON_USE_FREELISTS #define CYTHON_USE_FREELISTS 1 #endif #undef CYTHON_IMMORTAL_CONSTANTS #define CYTHON_IMMORTAL_CONSTANTS 0 #else #define CYTHON_COMPILING_IN_PYPY 0 #define CYTHON_COMPILING_IN_CPYTHON 1 #define CYTHON_COMPILING_IN_LIMITED_API 0 #define CYTHON_COMPILING_IN_GRAAL 0 #ifdef Py_GIL_DISABLED #define CYTHON_COMPILING_IN_CPYTHON_FREETHREADING 1 #else #define CYTHON_COMPILING_IN_CPYTHON_FREETHREADING 0 #endif #if PY_VERSION_HEX < 0x030A0000 #undef CYTHON_USE_TYPE_SLOTS #define CYTHON_USE_TYPE_SLOTS 1 #elif !defined(CYTHON_USE_TYPE_SLOTS) #define CYTHON_USE_TYPE_SLOTS 1 #endif #ifndef CYTHON_USE_TYPE_SPECS #define CYTHON_USE_TYPE_SPECS 0 #endif #ifndef CYTHON_USE_PYTYPE_LOOKUP #define CYTHON_USE_PYTYPE_LOOKUP 1 #endif #ifndef CYTHON_USE_PYLONG_INTERNALS #define CYTHON_USE_PYLONG_INTERNALS 1 #endif #if CYTHON_COMPILING_IN_CPYTHON_FREETHREADING #undef CYTHON_USE_PYLIST_INTERNALS #define CYTHON_USE_PYLIST_INTERNALS 0 #elif !defined(CYTHON_USE_PYLIST_INTERNALS) #define CYTHON_USE_PYLIST_INTERNALS 1 #endif #ifndef CYTHON_USE_UNICODE_INTERNALS #define CYTHON_USE_UNICODE_INTERNALS 1 #endif #if CYTHON_COMPILING_IN_CPYTHON_FREETHREADING || PY_VERSION_HEX >= 0x030B00A2 #undef CYTHON_USE_UNICODE_WRITER #define CYTHON_USE_UNICODE_WRITER 0 #elif !defined(CYTHON_USE_UNICODE_WRITER) #define CYTHON_USE_UNICODE_WRITER 1 #endif #ifndef CYTHON_AVOID_BORROWED_REFS #define CYTHON_AVOID_BORROWED_REFS 0 #endif #if CYTHON_COMPILING_IN_CPYTHON_FREETHREADING #undef CYTHON_AVOID_THREAD_UNSAFE_BORROWED_REFS #define CYTHON_AVOID_THREAD_UNSAFE_BORROWED_REFS 1 #elif !defined(CYTHON_AVOID_THREAD_UNSAFE_BORROWED_REFS) #define CYTHON_AVOID_THREAD_UNSAFE_BORROWED_REFS 0 #endif #ifndef CYTHON_ASSUME_SAFE_MACROS #define CYTHON_ASSUME_SAFE_MACROS 1 #endif #ifndef CYTHON_ASSUME_SAFE_SIZE #define CYTHON_ASSUME_SAFE_SIZE 1 #endif #ifndef CYTHON_UNPACK_METHODS #define CYTHON_UNPACK_METHODS 1 #endif #ifndef CYTHON_FAST_THREAD_STATE #define CYTHON_FAST_THREAD_STATE 1 #endif #if CYTHON_COMPILING_IN_CPYTHON_FREETHREADING #undef CYTHON_FAST_GIL #define CYTHON_FAST_GIL 0 #elif !defined(CYTHON_FAST_GIL) #define CYTHON_FAST_GIL (PY_VERSION_HEX < 0x030C00A6) #endif #ifndef CYTHON_METH_FASTCALL #define CYTHON_METH_FASTCALL 1 #endif #ifndef CYTHON_FAST_PYCALL #define CYTHON_FAST_PYCALL 1 #endif #ifndef CYTHON_PEP487_INIT_SUBCLASS #define CYTHON_PEP487_INIT_SUBCLASS 1 #endif #ifndef CYTHON_PEP489_MULTI_PHASE_INIT #define CYTHON_PEP489_MULTI_PHASE_INIT 1 #endif #ifndef CYTHON_USE_MODULE_STATE #define CYTHON_USE_MODULE_STATE 0 #endif #ifndef CYTHON_USE_SYS_MONITORING #define CYTHON_USE_SYS_MONITORING (PY_VERSION_HEX >= 0x030d00B1) #endif #ifndef CYTHON_USE_TP_FINALIZE #define CYTHON_USE_TP_FINALIZE 1 #endif #ifndef CYTHON_USE_AM_SEND #define CYTHON_USE_AM_SEND 1 #endif #if CYTHON_COMPILING_IN_CPYTHON_FREETHREADING #undef CYTHON_USE_DICT_VERSIONS #define CYTHON_USE_DICT_VERSIONS 0 #elif !defined(CYTHON_USE_DICT_VERSIONS) #define CYTHON_USE_DICT_VERSIONS (PY_VERSION_HEX < 0x030C00A5 && !CYTHON_USE_MODULE_STATE) #endif #ifndef CYTHON_USE_EXC_INFO_STACK #define CYTHON_USE_EXC_INFO_STACK 1 #endif #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC #define CYTHON_UPDATE_DESCRIPTOR_DOC 1 #endif #ifndef CYTHON_USE_FREELISTS #define CYTHON_USE_FREELISTS (!CYTHON_COMPILING_IN_CPYTHON_FREETHREADING) #endif #if defined(CYTHON_IMMORTAL_CONSTANTS) && PY_VERSION_HEX < 0x030C0000 #undef CYTHON_IMMORTAL_CONSTANTS #define CYTHON_IMMORTAL_CONSTANTS 0 // definitely won't work #elif !defined(CYTHON_IMMORTAL_CONSTANTS) #define CYTHON_IMMORTAL_CONSTANTS (PY_VERSION_HEX >= 0x030C0000 && !CYTHON_USE_MODULE_STATE && CYTHON_COMPILING_IN_CPYTHON_FREETHREADING) #endif #endif #ifndef CYTHON_COMPRESS_STRINGS #define CYTHON_COMPRESS_STRINGS 1 #endif #ifndef CYTHON_FAST_PYCCALL #define CYTHON_FAST_PYCCALL CYTHON_FAST_PYCALL #endif #ifndef CYTHON_VECTORCALL #if CYTHON_COMPILING_IN_LIMITED_API #define CYTHON_VECTORCALL (__PYX_LIMITED_VERSION_HEX >= 0x030C0000) #else #define CYTHON_VECTORCALL (CYTHON_FAST_PYCCALL) #endif #endif #if CYTHON_USE_PYLONG_INTERNALS #undef SHIFT #undef BASE #undef MASK #ifdef SIZEOF_VOID_P enum { __pyx_check_sizeof_voidp = 1 / (int)(SIZEOF_VOID_P == sizeof(void*)) }; #endif #endif #ifndef __has_attribute #define __has_attribute(x) 0 #endif #ifndef __has_cpp_attribute #define __has_cpp_attribute(x) 0 #endif #ifndef CYTHON_RESTRICT #if defined(__GNUC__) #define CYTHON_RESTRICT __restrict__ #elif defined(_MSC_VER) && _MSC_VER >= 1400 #define CYTHON_RESTRICT __restrict #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L #define CYTHON_RESTRICT restrict #else #define CYTHON_RESTRICT #endif #endif #ifndef CYTHON_UNUSED #if defined(__cplusplus) /* for clang __has_cpp_attribute(maybe_unused) is true even before C++17 * but leads to warnings with -pedantic, since it is a C++17 feature */ #if ((defined(_MSVC_LANG) && _MSVC_LANG >= 201703L) || __cplusplus >= 201703L) #if __has_cpp_attribute(maybe_unused) #define CYTHON_UNUSED [[maybe_unused]] #endif #endif #endif #endif #ifndef CYTHON_UNUSED # if defined(__GNUC__) # if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) # define CYTHON_UNUSED __attribute__ ((__unused__)) # else # define CYTHON_UNUSED # endif # elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER)) # define CYTHON_UNUSED __attribute__ ((__unused__)) # else # define CYTHON_UNUSED # endif #endif #ifndef CYTHON_UNUSED_VAR # if defined(__cplusplus) template void CYTHON_UNUSED_VAR( const T& ) { } # else # define CYTHON_UNUSED_VAR(x) (void)(x) # endif #endif #ifndef CYTHON_MAYBE_UNUSED_VAR #define CYTHON_MAYBE_UNUSED_VAR(x) CYTHON_UNUSED_VAR(x) #endif #ifndef CYTHON_NCP_UNUSED # if CYTHON_COMPILING_IN_CPYTHON && !CYTHON_COMPILING_IN_CPYTHON_FREETHREADING # define CYTHON_NCP_UNUSED # else # define CYTHON_NCP_UNUSED CYTHON_UNUSED # endif #endif #ifndef CYTHON_USE_CPP_STD_MOVE #if defined(__cplusplus) && (\ __cplusplus >= 201103L || (defined(_MSC_VER) && _MSC_VER >= 1600)) #define CYTHON_USE_CPP_STD_MOVE 1 #else #define CYTHON_USE_CPP_STD_MOVE 0 #endif #endif #define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None) #include typedef uintptr_t __pyx_uintptr_t; #ifndef CYTHON_FALLTHROUGH #if defined(__cplusplus) /* for clang __has_cpp_attribute(fallthrough) is true even before C++17 * but leads to warnings with -pedantic, since it is a C++17 feature */ #if ((defined(_MSVC_LANG) && _MSVC_LANG >= 201703L) || __cplusplus >= 201703L) #if __has_cpp_attribute(fallthrough) #define CYTHON_FALLTHROUGH [[fallthrough]] #endif #endif #ifndef CYTHON_FALLTHROUGH #if __has_cpp_attribute(clang::fallthrough) #define CYTHON_FALLTHROUGH [[clang::fallthrough]] #elif __has_cpp_attribute(gnu::fallthrough) #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] #endif #endif #endif #ifndef CYTHON_FALLTHROUGH #if __has_attribute(fallthrough) #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) #else #define CYTHON_FALLTHROUGH #endif #endif #if defined(__clang__) && defined(__apple_build_version__) #if __apple_build_version__ < 7000000 #undef CYTHON_FALLTHROUGH #define CYTHON_FALLTHROUGH #endif #endif #endif #ifndef Py_UNREACHABLE #define Py_UNREACHABLE() assert(0); abort() #endif #ifdef __cplusplus template struct __PYX_IS_UNSIGNED_IMPL {static const bool value = T(0) < T(-1);}; #define __PYX_IS_UNSIGNED(type) (__PYX_IS_UNSIGNED_IMPL::value) #else #define __PYX_IS_UNSIGNED(type) (((type)-1) > 0) #endif #if CYTHON_COMPILING_IN_PYPY == 1 #define __PYX_NEED_TP_PRINT_SLOT (PY_VERSION_HEX < 0x030A0000) #else #define __PYX_NEED_TP_PRINT_SLOT (PY_VERSION_HEX < 0x03090000) #endif #define __PYX_REINTERPRET_FUNCION(func_pointer, other_pointer) ((func_pointer)(void(*)(void))(other_pointer)) /* CInitCode */ #ifndef CYTHON_INLINE #if defined(__clang__) #define CYTHON_INLINE __inline__ __attribute__ ((__unused__)) #elif defined(__GNUC__) #define CYTHON_INLINE __inline__ #elif defined(_MSC_VER) #define CYTHON_INLINE __inline #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L #define CYTHON_INLINE inline #else #define CYTHON_INLINE #endif #endif /* PythonCompatibility */ #define __PYX_BUILD_PY_SSIZE_T "n" #define CYTHON_FORMAT_SSIZE_T "z" #define __Pyx_BUILTIN_MODULE_NAME "builtins" #define __Pyx_DefaultClassType PyType_Type #if CYTHON_COMPILING_IN_LIMITED_API #ifndef CO_OPTIMIZED static int CO_OPTIMIZED; #endif #ifndef CO_NEWLOCALS static int CO_NEWLOCALS; #endif #ifndef CO_VARARGS static int CO_VARARGS; #endif #ifndef CO_VARKEYWORDS static int CO_VARKEYWORDS; #endif #ifndef CO_ASYNC_GENERATOR static int CO_ASYNC_GENERATOR; #endif #ifndef CO_GENERATOR static int CO_GENERATOR; #endif #ifndef CO_COROUTINE static int CO_COROUTINE; #endif #else #ifndef CO_COROUTINE #define CO_COROUTINE 0x80 #endif #ifndef CO_ASYNC_GENERATOR #define CO_ASYNC_GENERATOR 0x200 #endif #endif static int __Pyx_init_co_variables(void); #if PY_VERSION_HEX >= 0x030900A4 || defined(Py_IS_TYPE) #define __Pyx_IS_TYPE(ob, type) Py_IS_TYPE(ob, type) #else #define __Pyx_IS_TYPE(ob, type) (((const PyObject*)ob)->ob_type == (type)) #endif #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_Is) #define __Pyx_Py_Is(x, y) Py_Is(x, y) #else #define __Pyx_Py_Is(x, y) ((x) == (y)) #endif #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_IsNone) #define __Pyx_Py_IsNone(ob) Py_IsNone(ob) #else #define __Pyx_Py_IsNone(ob) __Pyx_Py_Is((ob), Py_None) #endif #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_IsTrue) #define __Pyx_Py_IsTrue(ob) Py_IsTrue(ob) #else #define __Pyx_Py_IsTrue(ob) __Pyx_Py_Is((ob), Py_True) #endif #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_IsFalse) #define __Pyx_Py_IsFalse(ob) Py_IsFalse(ob) #else #define __Pyx_Py_IsFalse(ob) __Pyx_Py_Is((ob), Py_False) #endif #define __Pyx_NoneAsNull(obj) (__Pyx_Py_IsNone(obj) ? NULL : (obj)) #if PY_VERSION_HEX >= 0x030900F0 && !CYTHON_COMPILING_IN_PYPY #define __Pyx_PyObject_GC_IsFinalized(o) PyObject_GC_IsFinalized(o) #else #define __Pyx_PyObject_GC_IsFinalized(o) _PyGC_FINALIZED(o) #endif #ifndef Py_TPFLAGS_CHECKTYPES #define Py_TPFLAGS_CHECKTYPES 0 #endif #ifndef Py_TPFLAGS_HAVE_INDEX #define Py_TPFLAGS_HAVE_INDEX 0 #endif #ifndef Py_TPFLAGS_HAVE_NEWBUFFER #define Py_TPFLAGS_HAVE_NEWBUFFER 0 #endif #ifndef Py_TPFLAGS_HAVE_FINALIZE #define Py_TPFLAGS_HAVE_FINALIZE 0 #endif #ifndef Py_TPFLAGS_SEQUENCE #define Py_TPFLAGS_SEQUENCE 0 #endif #ifndef Py_TPFLAGS_MAPPING #define Py_TPFLAGS_MAPPING 0 #endif #ifndef Py_TPFLAGS_IMMUTABLETYPE #define Py_TPFLAGS_IMMUTABLETYPE (1UL << 8) #endif #ifndef Py_TPFLAGS_DISALLOW_INSTANTIATION #define Py_TPFLAGS_DISALLOW_INSTANTIATION (1UL << 7) #endif #ifndef METH_STACKLESS #define METH_STACKLESS 0 #endif #ifndef METH_FASTCALL #ifndef METH_FASTCALL #define METH_FASTCALL 0x80 #endif typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject *const *args, Py_ssize_t nargs); typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject *const *args, Py_ssize_t nargs, PyObject *kwnames); #else #if PY_VERSION_HEX >= 0x030d00A4 # define __Pyx_PyCFunctionFast PyCFunctionFast # define __Pyx_PyCFunctionFastWithKeywords PyCFunctionFastWithKeywords #else # define __Pyx_PyCFunctionFast _PyCFunctionFast # define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords #endif #endif #if CYTHON_METH_FASTCALL #define __Pyx_METH_FASTCALL METH_FASTCALL #define __Pyx_PyCFunction_FastCall __Pyx_PyCFunctionFast #define __Pyx_PyCFunction_FastCallWithKeywords __Pyx_PyCFunctionFastWithKeywords #else #define __Pyx_METH_FASTCALL METH_VARARGS #define __Pyx_PyCFunction_FastCall PyCFunction #define __Pyx_PyCFunction_FastCallWithKeywords PyCFunctionWithKeywords #endif #if CYTHON_VECTORCALL #define __pyx_vectorcallfunc vectorcallfunc #define __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET PY_VECTORCALL_ARGUMENTS_OFFSET #define __Pyx_PyVectorcall_NARGS(n) PyVectorcall_NARGS((size_t)(n)) #else #define __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET 0 #define __Pyx_PyVectorcall_NARGS(n) ((Py_ssize_t)(n)) #endif #if PY_VERSION_HEX >= 0x030900B1 #define __Pyx_PyCFunction_CheckExact(func) PyCFunction_CheckExact(func) #else #define __Pyx_PyCFunction_CheckExact(func) PyCFunction_Check(func) #endif #define __Pyx_CyOrPyCFunction_Check(func) PyCFunction_Check(func) #if CYTHON_COMPILING_IN_CPYTHON #define __Pyx_CyOrPyCFunction_GET_FUNCTION(func) (((PyCFunctionObject*)(func))->m_ml->ml_meth) #elif !CYTHON_COMPILING_IN_LIMITED_API #define __Pyx_CyOrPyCFunction_GET_FUNCTION(func) PyCFunction_GET_FUNCTION(func) #endif #if CYTHON_COMPILING_IN_CPYTHON #define __Pyx_CyOrPyCFunction_GET_FLAGS(func) (((PyCFunctionObject*)(func))->m_ml->ml_flags) static CYTHON_INLINE PyObject* __Pyx_CyOrPyCFunction_GET_SELF(PyObject *func) { return (__Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_STATIC) ? NULL : ((PyCFunctionObject*)func)->m_self; } #endif static CYTHON_INLINE int __Pyx__IsSameCFunction(PyObject *func, void (*cfunc)(void)) { #if CYTHON_COMPILING_IN_LIMITED_API return PyCFunction_Check(func) && PyCFunction_GetFunction(func) == (PyCFunction) cfunc; #else return PyCFunction_Check(func) && PyCFunction_GET_FUNCTION(func) == (PyCFunction) cfunc; #endif } #define __Pyx_IsSameCFunction(func, cfunc) __Pyx__IsSameCFunction(func, cfunc) #if PY_VERSION_HEX < 0x03090000 || (CYTHON_COMPILING_IN_LIMITED_API && __PYX_LIMITED_VERSION_HEX < 0x030A0000) #define __Pyx_PyType_FromModuleAndSpec(m, s, b) ((void)m, PyType_FromSpecWithBases(s, b)) typedef PyObject *(*__Pyx_PyCMethod)(PyObject *, PyTypeObject *, PyObject *const *, size_t, PyObject *); #else #define __Pyx_PyType_FromModuleAndSpec(m, s, b) PyType_FromModuleAndSpec(m, s, b) #define __Pyx_PyCMethod PyCMethod #endif #ifndef METH_METHOD #define METH_METHOD 0x200 #endif #if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc) #define PyObject_Malloc(s) PyMem_Malloc(s) #define PyObject_Free(p) PyMem_Free(p) #define PyObject_Realloc(p) PyMem_Realloc(p) #endif #if CYTHON_COMPILING_IN_LIMITED_API #define __Pyx_PyFrame_SetLineNumber(frame, lineno) #elif CYTHON_COMPILING_IN_GRAAL && defined(GRAALPY_VERSION_NUM) && GRAALPY_VERSION_NUM > 0x19000000 #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0) #define __Pyx_PyFrame_SetLineNumber(frame, lineno) GraalPyFrame_SetLineNumber((frame), (lineno)) #elif CYTHON_COMPILING_IN_GRAAL #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0) #define __Pyx_PyFrame_SetLineNumber(frame, lineno) _PyFrame_SetLineNumber((frame), (lineno)) #else #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0) #define __Pyx_PyFrame_SetLineNumber(frame, lineno) (frame)->f_lineno = (lineno) #endif #if CYTHON_COMPILING_IN_LIMITED_API #define __Pyx_PyThreadState_Current PyThreadState_Get() #elif !CYTHON_FAST_THREAD_STATE #define __Pyx_PyThreadState_Current PyThreadState_GET() #elif PY_VERSION_HEX >= 0x030d00A1 #define __Pyx_PyThreadState_Current PyThreadState_GetUnchecked() #else #define __Pyx_PyThreadState_Current _PyThreadState_UncheckedGet() #endif #if CYTHON_USE_MODULE_STATE static CYTHON_INLINE void *__Pyx__PyModule_GetState(PyObject *op) { void *result; result = PyModule_GetState(op); if (!result) Py_FatalError("Couldn't find the module state"); return result; } #define __Pyx_PyModule_GetState(o) (__pyx_mstatetype *)__Pyx__PyModule_GetState(o) #else #define __Pyx_PyModule_GetState(op) ((void)op,__pyx_mstate_global) #endif #define __Pyx_PyObject_GetSlot(obj, name, func_ctype) __Pyx_PyType_GetSlot(Py_TYPE((PyObject *) obj), name, func_ctype) #define __Pyx_PyObject_TryGetSlot(obj, name, func_ctype) __Pyx_PyType_TryGetSlot(Py_TYPE(obj), name, func_ctype) #define __Pyx_PyObject_GetSubSlot(obj, sub, name, func_ctype) __Pyx_PyType_GetSubSlot(Py_TYPE(obj), sub, name, func_ctype) #define __Pyx_PyObject_TryGetSubSlot(obj, sub, name, func_ctype) __Pyx_PyType_TryGetSubSlot(Py_TYPE(obj), sub, name, func_ctype) #if CYTHON_USE_TYPE_SLOTS #define __Pyx_PyType_GetSlot(type, name, func_ctype) ((type)->name) #define __Pyx_PyType_TryGetSlot(type, name, func_ctype) __Pyx_PyType_GetSlot(type, name, func_ctype) #define __Pyx_PyType_GetSubSlot(type, sub, name, func_ctype) (((type)->sub) ? ((type)->sub->name) : NULL) #define __Pyx_PyType_TryGetSubSlot(type, sub, name, func_ctype) __Pyx_PyType_GetSubSlot(type, sub, name, func_ctype) #else #define __Pyx_PyType_GetSlot(type, name, func_ctype) ((func_ctype) PyType_GetSlot((type), Py_##name)) #define __Pyx_PyType_TryGetSlot(type, name, func_ctype)\ ((__PYX_LIMITED_VERSION_HEX >= 0x030A0000 ||\ (PyType_GetFlags(type) & Py_TPFLAGS_HEAPTYPE) || __Pyx_get_runtime_version() >= 0x030A0000) ?\ __Pyx_PyType_GetSlot(type, name, func_ctype) : NULL) #define __Pyx_PyType_GetSubSlot(obj, sub, name, func_ctype) __Pyx_PyType_GetSlot(obj, name, func_ctype) #define __Pyx_PyType_TryGetSubSlot(obj, sub, name, func_ctype) __Pyx_PyType_TryGetSlot(obj, name, func_ctype) #endif #if CYTHON_COMPILING_IN_CPYTHON || defined(_PyDict_NewPresized) #define __Pyx_PyDict_NewPresized(n) ((n <= 8) ? PyDict_New() : _PyDict_NewPresized(n)) #else #define __Pyx_PyDict_NewPresized(n) PyDict_New() #endif #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y) #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y) #if CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_UNICODE_INTERNALS #define __Pyx_PyDict_GetItemStrWithError(dict, name) _PyDict_GetItem_KnownHash(dict, name, ((PyASCIIObject *) name)->hash) static CYTHON_INLINE PyObject * __Pyx_PyDict_GetItemStr(PyObject *dict, PyObject *name) { PyObject *res = __Pyx_PyDict_GetItemStrWithError(dict, name); if (res == NULL) PyErr_Clear(); return res; } #elif !CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07020000 #define __Pyx_PyDict_GetItemStrWithError PyDict_GetItemWithError #define __Pyx_PyDict_GetItemStr PyDict_GetItem #else static CYTHON_INLINE PyObject * __Pyx_PyDict_GetItemStrWithError(PyObject *dict, PyObject *name) { #if CYTHON_COMPILING_IN_PYPY return PyDict_GetItem(dict, name); #else PyDictEntry *ep; PyDictObject *mp = (PyDictObject*) dict; long hash = ((PyStringObject *) name)->ob_shash; assert(hash != -1); ep = (mp->ma_lookup)(mp, name, hash); if (ep == NULL) { return NULL; } return ep->me_value; #endif } #define __Pyx_PyDict_GetItemStr PyDict_GetItem #endif #if CYTHON_USE_TYPE_SLOTS #define __Pyx_PyType_GetFlags(tp) (((PyTypeObject *)tp)->tp_flags) #define __Pyx_PyType_HasFeature(type, feature) ((__Pyx_PyType_GetFlags(type) & (feature)) != 0) #else #define __Pyx_PyType_GetFlags(tp) (PyType_GetFlags((PyTypeObject *)tp)) #define __Pyx_PyType_HasFeature(type, feature) PyType_HasFeature(type, feature) #endif #define __Pyx_PyObject_GetIterNextFunc(iterator) __Pyx_PyObject_GetSlot(iterator, tp_iternext, iternextfunc) #if CYTHON_USE_TYPE_SPECS #define __Pyx_PyHeapTypeObject_GC_Del(obj) {\ PyTypeObject *type = Py_TYPE((PyObject*)obj);\ assert(__Pyx_PyType_HasFeature(type, Py_TPFLAGS_HEAPTYPE));\ PyObject_GC_Del(obj);\ Py_DECREF(type);\ } #else #define __Pyx_PyHeapTypeObject_GC_Del(obj) PyObject_GC_Del(obj) #endif #if CYTHON_COMPILING_IN_LIMITED_API #define __Pyx_PyUnicode_READY(op) (0) #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_ReadChar(u, i) #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((void)u, 1114111U) #define __Pyx_PyUnicode_KIND(u) ((void)u, (0)) #define __Pyx_PyUnicode_DATA(u) ((void*)u) #define __Pyx_PyUnicode_READ(k, d, i) ((void)k, PyUnicode_ReadChar((PyObject*)(d), i)) #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GetLength(u)) #else #if PY_VERSION_HEX >= 0x030C0000 #define __Pyx_PyUnicode_READY(op) (0) #else #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ?\ 0 : _PyUnicode_Ready((PyObject *)(op))) #endif #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i) #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) PyUnicode_MAX_CHAR_VALUE(u) #define __Pyx_PyUnicode_KIND(u) ((int)PyUnicode_KIND(u)) #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u) #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i) #define __Pyx_PyUnicode_WRITE(k, d, i, ch) PyUnicode_WRITE(k, d, i, (Py_UCS4) ch) #if PY_VERSION_HEX >= 0x030C0000 #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_LENGTH(u)) #else #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x03090000 #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : ((PyCompactUnicodeObject *)(u))->wstr_length)) #else #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u))) #endif #endif #endif #if CYTHON_COMPILING_IN_PYPY #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b) #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b) #else #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b) #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\ PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b)) #endif #if CYTHON_COMPILING_IN_PYPY #if !defined(PyUnicode_DecodeUnicodeEscape) #define PyUnicode_DecodeUnicodeEscape(s, size, errors) PyUnicode_Decode(s, size, "unicode_escape", errors) #endif #if !defined(PyUnicode_Contains) #define PyUnicode_Contains(u, s) PySequence_Contains(u, s) #endif #if !defined(PyByteArray_Check) #define PyByteArray_Check(obj) PyObject_TypeCheck(obj, &PyByteArray_Type) #endif #if !defined(PyObject_Format) #define PyObject_Format(obj, fmt) PyObject_CallMethod(obj, "__format__", "O", fmt) #endif #endif #define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None || (PyUnicode_Check(b) && !PyUnicode_CheckExact(b)))) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b)) #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030E0000 #define __Pyx_PySequence_ListKeepNew(obj)\ (likely(PyList_CheckExact(obj) && PyUnstable_Object_IsUniquelyReferenced(obj)) ? __Pyx_NewRef(obj) : PySequence_List(obj)) #elif CYTHON_COMPILING_IN_CPYTHON #define __Pyx_PySequence_ListKeepNew(obj)\ (likely(PyList_CheckExact(obj) && Py_REFCNT(obj) == 1) ? __Pyx_NewRef(obj) : PySequence_List(obj)) #else #define __Pyx_PySequence_ListKeepNew(obj) PySequence_List(obj) #endif #ifndef PySet_CheckExact #define PySet_CheckExact(obj) __Pyx_IS_TYPE(obj, &PySet_Type) #endif #if PY_VERSION_HEX >= 0x030900A4 #define __Pyx_SET_REFCNT(obj, refcnt) Py_SET_REFCNT(obj, refcnt) #define __Pyx_SET_SIZE(obj, size) Py_SET_SIZE(obj, size) #else #define __Pyx_SET_REFCNT(obj, refcnt) Py_REFCNT(obj) = (refcnt) #define __Pyx_SET_SIZE(obj, size) Py_SIZE(obj) = (size) #endif enum __Pyx_ReferenceSharing { __Pyx_ReferenceSharing_DefinitelyUnique, // We created it so we know it's unshared - no need to check __Pyx_ReferenceSharing_OwnStrongReference, __Pyx_ReferenceSharing_FunctionArgument, __Pyx_ReferenceSharing_SharedReference, // Never trust it to be unshared because it's a global or similar }; #if CYTHON_COMPILING_IN_CPYTHON_FREETHREADING && PY_VERSION_HEX >= 0x030E0000 #define __Pyx_IS_UNIQUELY_REFERENCED(o, sharing)\ (sharing == __Pyx_ReferenceSharing_DefinitelyUnique ? 1 :\ (sharing == __Pyx_ReferenceSharing_FunctionArgument ? 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(sdigit) 0 : ((Py_SIZE(x) < 0) ? -(sdigit)__Pyx_PyLong_Digits(x)[0] : (sdigit)__Pyx_PyLong_Digits(x)[0])) typedef sdigit __Pyx_compact_pylong; typedef digit __Pyx_compact_upylong; #endif #if PY_VERSION_HEX >= 0x030C00A5 #define __Pyx_PyLong_Digits(x) (((PyLongObject*)x)->long_value.ob_digit) #else #define __Pyx_PyLong_Digits(x) (((PyLongObject*)x)->ob_digit) #endif #endif #if __PYX_DEFAULT_STRING_ENCODING_IS_UTF8 #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL) #elif __PYX_DEFAULT_STRING_ENCODING_IS_ASCII #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeASCII(c_str, size, NULL) #else #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL) #endif /* Test for GCC > 2.95 */ #if defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95))) #define likely(x) __builtin_expect(!!(x), 1) #define unlikely(x) __builtin_expect(!!(x), 0) #else /* !__GNUC__ or GCC < 2.95 */ #define likely(x) (x) #define unlikely(x) (x) #endif /* __GNUC__ */ /* PretendToInitialize */ #ifdef __cplusplus #if __cplusplus > 201103L #include #endif template static void __Pyx_pretend_to_initialize(T* ptr) { #if __cplusplus > 201103L if ((std::is_trivially_default_constructible::value)) #endif *ptr = T(); (void)ptr; } #else static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; } #endif #if !CYTHON_USE_MODULE_STATE static PyObject *__pyx_m = NULL; #endif static int __pyx_lineno; static int __pyx_clineno = 0; static const char * const __pyx_cfilenm = __FILE__; static const char *__pyx_filename; /* Header.proto */ #if !defined(CYTHON_CCOMPLEX) #if defined(__cplusplus) #define CYTHON_CCOMPLEX 1 #elif (defined(_Complex_I) && !defined(_MSC_VER)) || ((defined (__STDC_VERSION__) && __STDC_VERSION__ >= 201112L) && !defined(__STDC_NO_COMPLEX__) && !defined(_MSC_VER)) #define CYTHON_CCOMPLEX 1 #else #define CYTHON_CCOMPLEX 0 #endif #endif #if CYTHON_CCOMPLEX #ifdef __cplusplus #include #else #include #endif #endif #if CYTHON_CCOMPLEX && !defined(__cplusplus) && defined(__sun__) && defined(__GNUC__) #undef _Complex_I #define _Complex_I 1.0fj #endif /* #### Code section: filename_table ### */ static const char* const __pyx_f[] = { "src/HTSeq/_HTSeq.pyx", "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd", "src/HTSeq/_HTSeq.pxd", "", "cpython/type.pxd", }; /* #### Code section: utility_code_proto_before_types ### */ /* Atomics.proto (used by UnpackUnboundCMethod) */ #include #ifndef CYTHON_ATOMICS #define CYTHON_ATOMICS 1 #endif #define __PYX_CYTHON_ATOMICS_ENABLED() CYTHON_ATOMICS #define __PYX_GET_CYTHON_COMPILING_IN_CPYTHON_FREETHREADING() CYTHON_COMPILING_IN_CPYTHON_FREETHREADING #define __pyx_atomic_int_type int #define __pyx_nonatomic_int_type int #if CYTHON_ATOMICS && (defined(__STDC_VERSION__) &&\ (__STDC_VERSION__ >= 201112L) &&\ !defined(__STDC_NO_ATOMICS__)) #include #elif CYTHON_ATOMICS && (defined(__cplusplus) && (\ (__cplusplus >= 201103L) ||\ (defined(_MSC_VER) && _MSC_VER >= 1700))) #include #endif #if CYTHON_ATOMICS && (defined(__STDC_VERSION__) &&\ (__STDC_VERSION__ >= 201112L) &&\ !defined(__STDC_NO_ATOMICS__) &&\ ATOMIC_INT_LOCK_FREE == 2) #undef __pyx_atomic_int_type #define __pyx_atomic_int_type atomic_int #define __pyx_atomic_ptr_type atomic_uintptr_t #define __pyx_nonatomic_ptr_type uintptr_t #define __pyx_atomic_incr_relaxed(value) atomic_fetch_add_explicit(value, 1, memory_order_relaxed) #define __pyx_atomic_incr_acq_rel(value) atomic_fetch_add_explicit(value, 1, memory_order_acq_rel) #define __pyx_atomic_decr_acq_rel(value) atomic_fetch_sub_explicit(value, 1, memory_order_acq_rel) #define __pyx_atomic_sub(value, arg) atomic_fetch_sub(value, arg) #define __pyx_atomic_int_cmp_exchange(value, expected, desired) atomic_compare_exchange_strong(value, expected, desired) #define __pyx_atomic_load(value) atomic_load(value) #define __pyx_atomic_store(value, new_value) atomic_store(value, new_value) #define __pyx_atomic_pointer_load_relaxed(value) atomic_load_explicit(value, memory_order_relaxed) #define __pyx_atomic_pointer_load_acquire(value) atomic_load_explicit(value, memory_order_acquire) #define __pyx_atomic_pointer_exchange(value, new_value) atomic_exchange(value, (__pyx_nonatomic_ptr_type)new_value) #define __pyx_atomic_pointer_cmp_exchange(value, expected, desired) atomic_compare_exchange_strong(value, expected, desired) #if defined(__PYX_DEBUG_ATOMICS) && defined(_MSC_VER) #pragma message ("Using standard C atomics") #elif defined(__PYX_DEBUG_ATOMICS) #warning "Using standard C atomics" #endif #elif CYTHON_ATOMICS && (defined(__cplusplus) && (\ (__cplusplus >= 201103L) ||\ \ (defined(_MSC_VER) && _MSC_VER >= 1700)) &&\ ATOMIC_INT_LOCK_FREE == 2) #undef __pyx_atomic_int_type #define __pyx_atomic_int_type std::atomic_int #define __pyx_atomic_ptr_type std::atomic_uintptr_t #define __pyx_nonatomic_ptr_type uintptr_t #define __pyx_atomic_incr_relaxed(value) std::atomic_fetch_add_explicit(value, 1, std::memory_order_relaxed) #define __pyx_atomic_incr_acq_rel(value) std::atomic_fetch_add_explicit(value, 1, std::memory_order_acq_rel) #define __pyx_atomic_decr_acq_rel(value) std::atomic_fetch_sub_explicit(value, 1, std::memory_order_acq_rel) #define __pyx_atomic_sub(value, arg) std::atomic_fetch_sub(value, arg) #define __pyx_atomic_int_cmp_exchange(value, expected, desired) std::atomic_compare_exchange_strong(value, expected, desired) #define __pyx_atomic_load(value) std::atomic_load(value) #define __pyx_atomic_store(value, new_value) std::atomic_store(value, new_value) #define __pyx_atomic_pointer_load_relaxed(value) std::atomic_load_explicit(value, std::memory_order_relaxed) #define __pyx_atomic_pointer_load_acquire(value) std::atomic_load_explicit(value, std::memory_order_acquire) #define __pyx_atomic_pointer_exchange(value, new_value) std::atomic_exchange(value, (__pyx_nonatomic_ptr_type)new_value) #define __pyx_atomic_pointer_cmp_exchange(value, expected, desired) std::atomic_compare_exchange_strong(value, expected, desired) #if defined(__PYX_DEBUG_ATOMICS) && defined(_MSC_VER) #pragma message ("Using standard C++ atomics") #elif defined(__PYX_DEBUG_ATOMICS) #warning "Using standard C++ atomics" #endif #elif CYTHON_ATOMICS && (__GNUC__ >= 5 || (__GNUC__ == 4 &&\ (__GNUC_MINOR__ > 1 ||\ (__GNUC_MINOR__ == 1 && __GNUC_PATCHLEVEL__ >= 2)))) #define __pyx_atomic_ptr_type void* #define __pyx_nonatomic_ptr_type void* #define __pyx_atomic_incr_relaxed(value) __sync_fetch_and_add(value, 1) #define __pyx_atomic_incr_acq_rel(value) __sync_fetch_and_add(value, 1) #define __pyx_atomic_decr_acq_rel(value) __sync_fetch_and_sub(value, 1) #define __pyx_atomic_sub(value, arg) __sync_fetch_and_sub(value, arg) static CYTHON_INLINE int __pyx_atomic_int_cmp_exchange(__pyx_atomic_int_type* value, __pyx_nonatomic_int_type* expected, __pyx_nonatomic_int_type desired) { __pyx_nonatomic_int_type old = __sync_val_compare_and_swap(value, *expected, desired); int result = old == *expected; *expected = old; return result; } #define __pyx_atomic_load(value) __sync_fetch_and_add(value, 0) #define __pyx_atomic_store(value, new_value) __sync_lock_test_and_set(value, new_value) #define __pyx_atomic_pointer_load_relaxed(value) __sync_fetch_and_add(value, 0) #define __pyx_atomic_pointer_load_acquire(value) __sync_fetch_and_add(value, 0) #define __pyx_atomic_pointer_exchange(value, new_value) __sync_lock_test_and_set(value, (__pyx_atomic_ptr_type)new_value) static CYTHON_INLINE int __pyx_atomic_pointer_cmp_exchange(__pyx_atomic_ptr_type* value, __pyx_nonatomic_ptr_type* expected, __pyx_nonatomic_ptr_type desired) { __pyx_nonatomic_ptr_type old = __sync_val_compare_and_swap(value, *expected, desired); int result = old == *expected; *expected = old; return result; } #ifdef __PYX_DEBUG_ATOMICS #warning "Using GNU atomics" #endif #elif CYTHON_ATOMICS && defined(_MSC_VER) #include #undef __pyx_atomic_int_type #define __pyx_atomic_int_type long #define __pyx_atomic_ptr_type void* #undef __pyx_nonatomic_int_type #define __pyx_nonatomic_int_type long #define __pyx_nonatomic_ptr_type void* #pragma intrinsic (_InterlockedExchangeAdd, _InterlockedExchange, _InterlockedCompareExchange, _InterlockedCompareExchangePointer, _InterlockedExchangePointer) #define __pyx_atomic_incr_relaxed(value) _InterlockedExchangeAdd(value, 1) #define __pyx_atomic_incr_acq_rel(value) _InterlockedExchangeAdd(value, 1) #define __pyx_atomic_decr_acq_rel(value) _InterlockedExchangeAdd(value, -1) #define __pyx_atomic_sub(value, arg) _InterlockedExchangeAdd(value, -arg) static CYTHON_INLINE int __pyx_atomic_int_cmp_exchange(__pyx_atomic_int_type* value, __pyx_nonatomic_int_type* expected, __pyx_nonatomic_int_type desired) { __pyx_nonatomic_int_type old = _InterlockedCompareExchange(value, desired, *expected); int result = old == *expected; *expected = old; return result; } #define __pyx_atomic_load(value) _InterlockedExchangeAdd(value, 0) #define __pyx_atomic_store(value, new_value) _InterlockedExchange(value, new_value) #define __pyx_atomic_pointer_load_relaxed(value) *(void * volatile *)value #define __pyx_atomic_pointer_load_acquire(value) _InterlockedCompareExchangePointer(value, 0, 0) #define __pyx_atomic_pointer_exchange(value, new_value) _InterlockedExchangePointer(value, (__pyx_atomic_ptr_type)new_value) static CYTHON_INLINE int __pyx_atomic_pointer_cmp_exchange(__pyx_atomic_ptr_type* value, __pyx_nonatomic_ptr_type* expected, __pyx_nonatomic_ptr_type desired) { __pyx_atomic_ptr_type old = _InterlockedCompareExchangePointer(value, desired, *expected); int result = old == *expected; *expected = old; return result; } #ifdef __PYX_DEBUG_ATOMICS #pragma message ("Using MSVC atomics") #endif #else #undef CYTHON_ATOMICS #define CYTHON_ATOMICS 0 #ifdef __PYX_DEBUG_ATOMICS #warning "Not using atomics" #endif #endif /* CriticalSectionsDefinition.proto (used by CriticalSections) */ #if !CYTHON_COMPILING_IN_CPYTHON_FREETHREADING #define __Pyx_PyCriticalSection void* #define __Pyx_PyCriticalSection2 void* #define __Pyx_PyCriticalSection_End(cs) #define __Pyx_PyCriticalSection2_End(cs) #else #define __Pyx_PyCriticalSection PyCriticalSection #define __Pyx_PyCriticalSection2 PyCriticalSection2 #define __Pyx_PyCriticalSection_End PyCriticalSection_End #define __Pyx_PyCriticalSection2_End PyCriticalSection2_End #endif /* CriticalSections.proto (used by ParseKeywordsImpl) */ #if !CYTHON_COMPILING_IN_CPYTHON_FREETHREADING #define __Pyx_PyCriticalSection_Begin(cs, arg) (void)(cs) #define __Pyx_PyCriticalSection2_Begin(cs, arg1, arg2) (void)(cs) #else #define __Pyx_PyCriticalSection_Begin PyCriticalSection_Begin #define __Pyx_PyCriticalSection2_Begin PyCriticalSection2_Begin #endif #if PY_VERSION_HEX < 0x030d0000 || CYTHON_COMPILING_IN_LIMITED_API #define __Pyx_BEGIN_CRITICAL_SECTION(o) { #define __Pyx_END_CRITICAL_SECTION() } #else #define __Pyx_BEGIN_CRITICAL_SECTION Py_BEGIN_CRITICAL_SECTION #define __Pyx_END_CRITICAL_SECTION Py_END_CRITICAL_SECTION #endif /* IncludeStructmemberH.proto (used by FixUpExtensionType) */ #include /* BufferFormatStructs.proto (used by BufferFormatCheck) */ struct __Pyx_StructField_; #define __PYX_BUF_FLAGS_PACKED_STRUCT (1 << 0) typedef struct { const char* name; const struct __Pyx_StructField_* fields; size_t size; size_t arraysize[8]; int ndim; char typegroup; char is_unsigned; int flags; } __Pyx_TypeInfo; typedef struct __Pyx_StructField_ { const __Pyx_TypeInfo* type; const char* name; size_t offset; } __Pyx_StructField; typedef struct { const __Pyx_StructField* field; size_t parent_offset; } __Pyx_BufFmt_StackElem; typedef struct { __Pyx_StructField root; __Pyx_BufFmt_StackElem* head; size_t fmt_offset; size_t new_count, enc_count; size_t struct_alignment; int is_complex; char enc_type; char new_packmode; char enc_packmode; char is_valid_array; } __Pyx_BufFmt_Context; /* #### Code section: numeric_typedefs ### */ /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":744 * # in Cython to enable them only on the right systems. * * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<< * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t */ typedef npy_int8 __pyx_t_5numpy_int8_t; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":745 * * ctypedef npy_int8 int8_t * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<< * ctypedef npy_int32 int32_t * ctypedef npy_int64 int64_t */ typedef npy_int16 __pyx_t_5numpy_int16_t; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":746 * ctypedef npy_int8 int8_t * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<< * ctypedef npy_int64 int64_t * */ typedef npy_int32 __pyx_t_5numpy_int32_t; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":747 * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<< * * ctypedef npy_uint8 uint8_t */ typedef npy_int64 __pyx_t_5numpy_int64_t; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":749 * ctypedef npy_int64 int64_t * * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<< * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t */ typedef npy_uint8 __pyx_t_5numpy_uint8_t; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":750 * * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<< * ctypedef npy_uint32 uint32_t * ctypedef npy_uint64 uint64_t */ typedef npy_uint16 __pyx_t_5numpy_uint16_t; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":751 * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<< * ctypedef npy_uint64 uint64_t * */ typedef npy_uint32 __pyx_t_5numpy_uint32_t; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":752 * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<< * * ctypedef npy_float32 float32_t */ typedef npy_uint64 __pyx_t_5numpy_uint64_t; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":754 * ctypedef npy_uint64 uint64_t * * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<< * ctypedef npy_float64 float64_t * #ctypedef npy_float80 float80_t */ typedef npy_float32 __pyx_t_5numpy_float32_t; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":755 * * ctypedef npy_float32 float32_t * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<< * #ctypedef npy_float80 float80_t * #ctypedef npy_float128 float128_t */ typedef npy_float64 __pyx_t_5numpy_float64_t; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":762 * ctypedef double complex complex128_t * * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<< * ctypedef npy_ulonglong ulonglong_t * */ typedef npy_longlong __pyx_t_5numpy_longlong_t; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":763 * * ctypedef npy_longlong longlong_t * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<< * * ctypedef npy_intp intp_t */ typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":765 * ctypedef npy_ulonglong ulonglong_t * * ctypedef npy_intp intp_t # <<<<<<<<<<<<<< * ctypedef npy_uintp uintp_t * */ typedef npy_intp __pyx_t_5numpy_intp_t; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":766 * * ctypedef npy_intp intp_t * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<< * * ctypedef npy_double float_t */ typedef npy_uintp __pyx_t_5numpy_uintp_t; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":768 * ctypedef npy_uintp uintp_t * * ctypedef npy_double float_t # <<<<<<<<<<<<<< * ctypedef npy_double double_t * ctypedef npy_longdouble longdouble_t */ typedef npy_double __pyx_t_5numpy_float_t; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":769 * * ctypedef npy_double float_t * ctypedef npy_double double_t # <<<<<<<<<<<<<< * ctypedef npy_longdouble longdouble_t * */ typedef npy_double __pyx_t_5numpy_double_t; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":770 * ctypedef npy_double float_t * ctypedef npy_double double_t * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<< * * ctypedef float complex cfloat_t */ typedef npy_longdouble __pyx_t_5numpy_longdouble_t; /* #### Code section: complex_type_declarations ### */ /* Declarations.proto */ #if CYTHON_CCOMPLEX && (1) && (!0 || __cplusplus) #ifdef __cplusplus typedef ::std::complex< float > __pyx_t_float_complex; #else typedef float _Complex __pyx_t_float_complex; #endif #else typedef struct { float real, imag; } __pyx_t_float_complex; #endif static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float, float); /* Declarations.proto */ #if CYTHON_CCOMPLEX && (1) && (!0 || __cplusplus) #ifdef __cplusplus typedef ::std::complex< double > __pyx_t_double_complex; #else typedef double _Complex __pyx_t_double_complex; #endif #else typedef struct { double real, imag; } __pyx_t_double_complex; #endif static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double, double); /* Declarations.proto */ #if CYTHON_CCOMPLEX && (1) && (!0 || __cplusplus) #ifdef __cplusplus typedef ::std::complex< long double > __pyx_t_long_double_complex; #else typedef long double _Complex __pyx_t_long_double_complex; #endif #else typedef struct { long double real, imag; } __pyx_t_long_double_complex; #endif static CYTHON_INLINE __pyx_t_long_double_complex __pyx_t_long_double_complex_from_parts(long double, long double); /* #### Code section: type_declarations ### */ /*--- Type declarations ---*/ struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval; struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition; struct __pyx_obj_5HTSeq_6_HTSeq_Sequence; struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities; struct __pyx_obj_5HTSeq_6_HTSeq_Alignment; struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal; struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment; struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector; struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray; struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation; struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment; struct __pyx_obj_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__; struct __pyx_opt_args_5HTSeq_6_HTSeq_8Sequence_get_reverse_complement; struct __pyx_opt_args_5HTSeq_6_HTSeq_8Sequence_trim_left_end; struct __pyx_opt_args_5HTSeq_6_HTSeq_8Sequence_trim_right_end; struct __pyx_opt_args_5HTSeq_6_HTSeq_21SequenceWithQualities_trim_left_end_with_quals; struct __pyx_opt_args_5HTSeq_6_HTSeq_21SequenceWithQualities_trim_right_end_with_quals; struct __pyx_opt_args_5HTSeq_6_HTSeq_21SequenceWithQualities_get_reverse_complement; struct __pyx_opt_args_5HTSeq_6_HTSeq_parse_cigar; struct __pyx_opt_args_5HTSeq_6_HTSeq_build_cigar_list; struct __pyx_opt_args_5HTSeq_6_HTSeq_quotesafe_split; /* "HTSeq/_HTSeq.pxd":23 * cdef public str name * cdef public str descr * cpdef Sequence get_reverse_complement(self, bint rename=?) # <<<<<<<<<<<<<< * cpdef object add_bases_to_count_array(Sequence self, numpy.ndarray count_array_) * cpdef Sequence trim_left_end(Sequence self, Sequence pattern, float mismatch_prop=?) */ struct __pyx_opt_args_5HTSeq_6_HTSeq_8Sequence_get_reverse_complement { int __pyx_n; int rename; }; /* "HTSeq/_HTSeq.pxd":25 * cpdef Sequence get_reverse_complement(self, bint rename=?) * cpdef object add_bases_to_count_array(Sequence self, numpy.ndarray count_array_) * cpdef Sequence trim_left_end(Sequence self, Sequence pattern, float mismatch_prop=?) # <<<<<<<<<<<<<< * cpdef Sequence trim_right_end(Sequence self, Sequence pattern, float mismatch_prop=?) * */ struct __pyx_opt_args_5HTSeq_6_HTSeq_8Sequence_trim_left_end { int __pyx_n; float mismatch_prop; }; /* "HTSeq/_HTSeq.pxd":26 * cpdef object add_bases_to_count_array(Sequence self, numpy.ndarray count_array_) * cpdef Sequence trim_left_end(Sequence self, Sequence pattern, float mismatch_prop=?) * cpdef Sequence trim_right_end(Sequence self, Sequence pattern, float mismatch_prop=?) # <<<<<<<<<<<<<< * * */ struct __pyx_opt_args_5HTSeq_6_HTSeq_8Sequence_trim_right_end { int __pyx_n; float mismatch_prop; }; /* "HTSeq/_HTSeq.pxd":36 * cdef _fill_qual_arr(SequenceWithQualities self) * cpdef object add_qual_to_count_array(SequenceWithQualities self, numpy.ndarray count_array_) * cpdef SequenceWithQualities trim_left_end_with_quals(SequenceWithQualities self, # <<<<<<<<<<<<<< * Sequence pattern, int max_mm_qual=?) * cpdef SequenceWithQualities trim_right_end_with_quals(SequenceWithQualities self, */ struct __pyx_opt_args_5HTSeq_6_HTSeq_21SequenceWithQualities_trim_left_end_with_quals { int __pyx_n; int max_mm_qual; }; /* "HTSeq/_HTSeq.pxd":38 * cpdef SequenceWithQualities trim_left_end_with_quals(SequenceWithQualities self, * Sequence pattern, int max_mm_qual=?) * cpdef SequenceWithQualities trim_right_end_with_quals(SequenceWithQualities self, # <<<<<<<<<<<<<< * Sequence pattern, int max_mm_qual=?) * */ struct __pyx_opt_args_5HTSeq_6_HTSeq_21SequenceWithQualities_trim_right_end_with_quals { int __pyx_n; int max_mm_qual; }; /* "HTSeq/_HTSeq.pyx":1365 * return sio.getvalue() * * cpdef SequenceWithQualities get_reverse_complement(self, bint rename=True): # <<<<<<<<<<<<<< * cdef SequenceWithQualities res * if rename: */ struct __pyx_opt_args_5HTSeq_6_HTSeq_21SequenceWithQualities_get_reverse_complement { int __pyx_n; int rename; }; /* "HTSeq/_HTSeq.pyx":1529 * * * cpdef list parse_cigar(str cigar_string, int ref_left=0, str chrom="", str strand="."): # <<<<<<<<<<<<<< * cdef list split_cigar, cl * cdef int size */ struct __pyx_opt_args_5HTSeq_6_HTSeq_parse_cigar { int __pyx_n; int ref_left; PyObject *chrom; PyObject *strand; }; /* "HTSeq/_HTSeq.pyx":1547 * * * cpdef list build_cigar_list(list cigar_pairs, int ref_left=0, str chrom="", str strand="."): # <<<<<<<<<<<<<< * cdef list split_cigar, res * cdef int rpos, qpos, size */ struct __pyx_opt_args_5HTSeq_6_HTSeq_build_cigar_list { int __pyx_n; int ref_left; PyObject *chrom; PyObject *strand; }; /* "HTSeq/_HTSeq.pyx":2072 * # Helpers * ########################### * cpdef list quotesafe_split(bytes s, bytes split=b';', bytes quote=b'"'): # <<<<<<<<<<<<<< * cdef list l = [] * cdef int i = 0 */ struct __pyx_opt_args_5HTSeq_6_HTSeq_quotesafe_split { int __pyx_n; PyObject *split; PyObject *quote; }; /* "HTSeq/_HTSeq.pxd":3 * cimport numpy * * cdef class GenomicInterval: # <<<<<<<<<<<<<< * * cdef public str chrom */ struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval { PyObject_HEAD struct __pyx_vtabstruct_5HTSeq_6_HTSeq_GenomicInterval *__pyx_vtab; PyObject *chrom; long start; long end; PyObject *_strand; }; /* "HTSeq/_HTSeq.pxd":15 * cpdef extend_to_include(GenomicInterval self, GenomicInterval iv) * * cdef class GenomicPosition( GenomicInterval ): # <<<<<<<<<<<<<< * pass * */ struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition { struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval __pyx_base; }; /* "HTSeq/_HTSeq.pxd":19 * * * cdef class Sequence(object): # <<<<<<<<<<<<<< * cdef public bytes seq * cdef public str name */ struct __pyx_obj_5HTSeq_6_HTSeq_Sequence { PyObject_HEAD struct __pyx_vtabstruct_5HTSeq_6_HTSeq_Sequence *__pyx_vtab; PyObject *seq; PyObject *name; PyObject *descr; }; /* "HTSeq/_HTSeq.pxd":29 * * * cdef class SequenceWithQualities(Sequence): # <<<<<<<<<<<<<< * cdef readonly bytes _qualstr * cdef readonly bytes _qualstr_phred */ struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities { struct __pyx_obj_5HTSeq_6_HTSeq_Sequence __pyx_base; PyObject *_qualstr; PyObject *_qualstr_phred; PyObject *_qualscale; PyObject *_qualarr; }; /* "HTSeq/_HTSeq.pxd":42 * * * cdef class Alignment(object): # <<<<<<<<<<<<<< * cdef public SequenceWithQualities _read * cdef public GenomicInterval iv */ struct __pyx_obj_5HTSeq_6_HTSeq_Alignment { PyObject_HEAD struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *_read; struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *iv; }; /* "HTSeq/_HTSeq.pxd":46 * cdef public GenomicInterval iv * * cdef class AlignmentWithSequenceReversal(Alignment): # <<<<<<<<<<<<<< * cdef public SequenceWithQualities read_as_aligned * cdef public SequenceWithQualities _read_as_sequenced */ struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal { struct __pyx_obj_5HTSeq_6_HTSeq_Alignment __pyx_base; struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *read_as_aligned; struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *_read_as_sequenced; }; /* "HTSeq/_HTSeq.pxd":50 * cdef public SequenceWithQualities _read_as_sequenced * * cdef class SAM_Alignment(AlignmentWithSequenceReversal): # <<<<<<<<<<<<<< * cdef public list cigar * cdef public int aQual */ struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment { struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal __pyx_base; PyObject *cigar; int aQual; struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition *mate_start; PyObject *pe_which; int inferred_insert_size; int proper_pair; int not_primary_alignment; int failed_platform_qc; int pcr_or_optical_duplicate; int supplementary; PyObject *original_sam_line; int _flag; PyObject *optional_fields; }; /* "HTSeq/_HTSeq.pyx":310 * * * cdef class ChromVector(object): # <<<<<<<<<<<<<< * """Counting vector covering a chromosome. * */ struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector { PyObject_HEAD PyObject *array; struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *iv; int offset; int is_vector_of_sets; PyObject *_storage; PyObject *typecode; PyObject *memmap_dir; }; /* "HTSeq/_HTSeq.pyx":598 * * * cdef class GenomicArray(object): # <<<<<<<<<<<<<< * """Coverage vector including multiple chromosomes. * */ struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray { PyObject_HEAD PyObject *chrom_vectors; int stranded; PyObject *typecode; PyObject *auto_add_chroms; PyObject *storage; PyObject *memmap_dir; PyObject *header; }; /* "HTSeq/_HTSeq.pyx":1486 * * * cdef class CigarOperation(object): # <<<<<<<<<<<<<< * * cdef public str type */ struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation { PyObject_HEAD PyObject *type; int size; struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *ref_iv; int query_from; int query_to; }; /* "HTSeq/_HTSeq.pyx":1662 * * * cdef class BowtieAlignment(AlignmentWithSequenceReversal): # <<<<<<<<<<<<<< * """When reading in a Bowtie file, objects of the class BowtieAlignment * are returned. 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PyObject *(*add_bases_to_count_array)(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *, PyArrayObject *, int __pyx_skip_dispatch); struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *(*trim_left_end)(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *, struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *, int __pyx_skip_dispatch, struct __pyx_opt_args_5HTSeq_6_HTSeq_8Sequence_trim_left_end *__pyx_optional_args); struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *(*trim_right_end)(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *, struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *, int __pyx_skip_dispatch, struct __pyx_opt_args_5HTSeq_6_HTSeq_8Sequence_trim_right_end *__pyx_optional_args); }; static struct __pyx_vtabstruct_5HTSeq_6_HTSeq_Sequence *__pyx_vtabptr_5HTSeq_6_HTSeq_Sequence; /* "HTSeq/_HTSeq.pyx":1248 * * * cdef class SequenceWithQualities(Sequence): # <<<<<<<<<<<<<< * """A Sequence with base-call quality scores. * It now has property 'qual', an integer NumPy array of Sanger/Phred */ struct __pyx_vtabstruct_5HTSeq_6_HTSeq_SequenceWithQualities { struct __pyx_vtabstruct_5HTSeq_6_HTSeq_Sequence __pyx_base; 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/* fastcall.proto */ #if CYTHON_AVOID_BORROWED_REFS #define __Pyx_ArgRef_VARARGS(args, i) __Pyx_PySequence_ITEM(args, i) #elif CYTHON_ASSUME_SAFE_MACROS #define __Pyx_ArgRef_VARARGS(args, i) __Pyx_NewRef(__Pyx_PyTuple_GET_ITEM(args, i)) #else #define __Pyx_ArgRef_VARARGS(args, i) __Pyx_XNewRef(PyTuple_GetItem(args, i)) #endif #define __Pyx_NumKwargs_VARARGS(kwds) PyDict_Size(kwds) #define __Pyx_KwValues_VARARGS(args, nargs) NULL #define __Pyx_GetKwValue_VARARGS(kw, kwvalues, s) __Pyx_PyDict_GetItemStrWithError(kw, s) #define __Pyx_KwargsAsDict_VARARGS(kw, kwvalues) PyDict_Copy(kw) #if CYTHON_METH_FASTCALL #define __Pyx_ArgRef_FASTCALL(args, i) __Pyx_NewRef(args[i]) #define __Pyx_NumKwargs_FASTCALL(kwds) __Pyx_PyTuple_GET_SIZE(kwds) #define __Pyx_KwValues_FASTCALL(args, nargs) ((args) + (nargs)) static CYTHON_INLINE PyObject * __Pyx_GetKwValue_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues, PyObject *s); #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000 || CYTHON_COMPILING_IN_LIMITED_API CYTHON_UNUSED static PyObject *__Pyx_KwargsAsDict_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues); #else #define __Pyx_KwargsAsDict_FASTCALL(kw, kwvalues) _PyStack_AsDict(kwvalues, kw) #endif #else #define __Pyx_ArgRef_FASTCALL __Pyx_ArgRef_VARARGS #define __Pyx_NumKwargs_FASTCALL __Pyx_NumKwargs_VARARGS #define __Pyx_KwValues_FASTCALL __Pyx_KwValues_VARARGS #define __Pyx_GetKwValue_FASTCALL __Pyx_GetKwValue_VARARGS #define __Pyx_KwargsAsDict_FASTCALL __Pyx_KwargsAsDict_VARARGS #endif #define __Pyx_ArgsSlice_VARARGS(args, start, stop) PyTuple_GetSlice(args, start, stop) #if CYTHON_METH_FASTCALL || (CYTHON_COMPILING_IN_CPYTHON && CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS) #define __Pyx_ArgsSlice_FASTCALL(args, start, stop) __Pyx_PyTuple_FromArray(args + start, stop - start) #else #define __Pyx_ArgsSlice_FASTCALL(args, start, stop) PyTuple_GetSlice(args, start, stop) #endif /* py_dict_items.proto (used by OwnedDictNext) */ static CYTHON_INLINE PyObject* __Pyx_PyDict_Items(PyObject* d); /* CallCFunction.proto (used by CallUnboundCMethod0) */ #define __Pyx_CallCFunction(cfunc, self, args)\ ((PyCFunction)(void(*)(void))(cfunc)->func)(self, args) #define __Pyx_CallCFunctionWithKeywords(cfunc, self, args, kwargs)\ ((PyCFunctionWithKeywords)(void(*)(void))(cfunc)->func)(self, args, kwargs) #define __Pyx_CallCFunctionFast(cfunc, self, args, nargs)\ ((__Pyx_PyCFunctionFast)(void(*)(void))(PyCFunction)(cfunc)->func)(self, args, nargs) #define __Pyx_CallCFunctionFastWithKeywords(cfunc, self, args, nargs, kwnames)\ ((__Pyx_PyCFunctionFastWithKeywords)(void(*)(void))(PyCFunction)(cfunc)->func)(self, args, nargs, kwnames) /* PyObjectCallOneArg.proto (used by CallUnboundCMethod0) */ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg); /* UnpackUnboundCMethod.proto (used by CallUnboundCMethod0) */ typedef struct { PyObject *type; PyObject **method_name; #if CYTHON_COMPILING_IN_CPYTHON_FREETHREADING && CYTHON_ATOMICS __pyx_atomic_int_type initialized; #endif PyCFunction func; PyObject *method; int flag; } __Pyx_CachedCFunction; #if CYTHON_COMPILING_IN_CPYTHON_FREETHREADING static CYTHON_INLINE int __Pyx_CachedCFunction_GetAndSetInitializing(__Pyx_CachedCFunction *cfunc) { #if !CYTHON_ATOMICS return 1; #else __pyx_nonatomic_int_type expected = 0; if (__pyx_atomic_int_cmp_exchange(&cfunc->initialized, &expected, 1)) { return 0; } return expected; #endif } static CYTHON_INLINE void __Pyx_CachedCFunction_SetFinishedInitializing(__Pyx_CachedCFunction *cfunc) { #if CYTHON_ATOMICS __pyx_atomic_store(&cfunc->initialized, 2); #endif } #else #define __Pyx_CachedCFunction_GetAndSetInitializing(cfunc) 2 #define __Pyx_CachedCFunction_SetFinishedInitializing(cfunc) #endif /* CallUnboundCMethod0.proto */ CYTHON_UNUSED static PyObject* __Pyx__CallUnboundCMethod0(__Pyx_CachedCFunction* cfunc, PyObject* self); #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_CallUnboundCMethod0(__Pyx_CachedCFunction* cfunc, PyObject* self); #else #define __Pyx_CallUnboundCMethod0(cfunc, self) __Pyx__CallUnboundCMethod0(cfunc, self) #endif /* py_dict_values.proto (used by OwnedDictNext) */ static CYTHON_INLINE PyObject* __Pyx_PyDict_Values(PyObject* d); /* OwnedDictNext.proto (used by ParseKeywordsImpl) */ #if CYTHON_AVOID_BORROWED_REFS static int __Pyx_PyDict_NextRef(PyObject *p, PyObject **ppos, PyObject **pkey, PyObject **pvalue); #else CYTHON_INLINE static int __Pyx_PyDict_NextRef(PyObject *p, Py_ssize_t *ppos, PyObject **pkey, PyObject **pvalue); #endif /* RaiseDoubleKeywords.proto (used by ParseKeywordsImpl) */ static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name); /* ParseKeywordsImpl.export */ static int __Pyx_ParseKeywordsTuple( PyObject *kwds, PyObject * const *kwvalues, PyObject ** const argnames[], PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, Py_ssize_t num_kwargs, const char* function_name, int ignore_unknown_kwargs ); static int __Pyx_ParseKeywordDictToDict( PyObject *kwds, PyObject ** const argnames[], PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, const char* function_name ); static int __Pyx_ParseKeywordDict( PyObject *kwds, PyObject ** const argnames[], PyObject *values[], Py_ssize_t num_pos_args, Py_ssize_t num_kwargs, const char* function_name, int ignore_unknown_kwargs ); /* CallUnboundCMethod2.proto */ CYTHON_UNUSED static PyObject* __Pyx__CallUnboundCMethod2(__Pyx_CachedCFunction* cfunc, PyObject* self, PyObject* arg1, PyObject* arg2); #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject *__Pyx_CallUnboundCMethod2(__Pyx_CachedCFunction *cfunc, PyObject *self, PyObject *arg1, PyObject *arg2); #else #define __Pyx_CallUnboundCMethod2(cfunc, self, arg1, arg2) __Pyx__CallUnboundCMethod2(cfunc, self, arg1, arg2) #endif /* ParseKeywords.proto */ static CYTHON_INLINE int __Pyx_ParseKeywords( PyObject *kwds, PyObject *const *kwvalues, PyObject ** const argnames[], PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, Py_ssize_t num_kwargs, const char* function_name, int ignore_unknown_kwargs ); /* RaiseArgTupleInvalid.proto */ static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact, Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found); /* ArgTypeTestFunc.export */ static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *name, int exact); /* ArgTypeTest.proto */ #define __Pyx_ArgTypeTest(obj, type, none_allowed, name, exact)\ ((likely(__Pyx_IS_TYPE(obj, type) | (none_allowed && (obj == Py_None)))) ? 1 :\ __Pyx__ArgTypeTest(obj, type, name, exact)) /* RaiseUnexpectedTypeError.proto (used by Intern) */ static int __Pyx_RaiseUnexpectedTypeError(const char *expected, PyObject *obj); /* Intern.proto */ static PyObject* __Pyx_Intern(PyObject* s); /* PyObjectDelAttr.proto (used by PyObjectSetAttrStr) */ #if CYTHON_COMPILING_IN_LIMITED_API && __PYX_LIMITED_VERSION_HEX < 0x030d0000 #define __Pyx_PyObject_DelAttr(o, n) PyObject_SetAttr(o, n, NULL) #else #define __Pyx_PyObject_DelAttr(o, n) PyObject_DelAttr(o, n) #endif /* PyObjectSetAttrStr.proto */ #if CYTHON_USE_TYPE_SLOTS #define __Pyx_PyObject_DelAttrStr(o,n) __Pyx_PyObject_SetAttrStr(o, n, NULL) static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value); #else #define __Pyx_PyObject_DelAttrStr(o,n) __Pyx_PyObject_DelAttr(o,n) #define __Pyx_PyObject_SetAttrStr(o,n,v) PyObject_SetAttr(o,n,v) #endif /* PyValueError_Check.proto */ #define __Pyx_PyExc_ValueError_Check(obj) __Pyx_TypeCheck(obj, PyExc_ValueError) /* RejectKeywords.export */ static void __Pyx_RejectKeywords(const char* function_name, PyObject *kwds); /* PyObjectFastCallMethod.proto */ #if CYTHON_VECTORCALL && PY_VERSION_HEX >= 0x03090000 #define __Pyx_PyObject_FastCallMethod(name, args, nargsf) PyObject_VectorcallMethod(name, args, nargsf, NULL) #else static PyObject *__Pyx_PyObject_FastCallMethod(PyObject *name, PyObject *const *args, size_t nargsf); #endif /* RaiseTooManyValuesToUnpack.proto */ static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); /* RaiseNeedMoreValuesToUnpack.proto */ static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index); /* IterFinish.proto */ static CYTHON_INLINE int __Pyx_IterFinish(void); /* UnpackItemEndCheck.proto */ static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected); /* PyObjectFormatAndDecref.proto */ static CYTHON_INLINE PyObject* __Pyx_PyObject_FormatSimpleAndDecref(PyObject* s, PyObject* f); static CYTHON_INLINE PyObject* __Pyx_PyObject_FormatAndDecref(PyObject* s, PyObject* f); /* PyUnicode_Unicode.proto */ static CYTHON_INLINE PyObject* __Pyx_PyUnicode_Unicode(PyObject *obj); /* BuildPyUnicode.proto (used by COrdinalToPyUnicode) */ static PyObject* __Pyx_PyUnicode_BuildFromAscii(Py_ssize_t ulength, const char* chars, int clength, int prepend_sign, char padding_char); /* COrdinalToPyUnicode.proto (used by CIntToPyUnicode) */ static CYTHON_INLINE int __Pyx_CheckUnicodeValue(int value); static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromOrdinal_Padded(int value, Py_ssize_t width, char padding_char); /* GCCDiagnostics.proto (used by CIntToPyUnicode) */ #if !defined(__INTEL_COMPILER) && defined(__GNUC__) && (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 6)) #define __Pyx_HAS_GCC_DIAGNOSTIC #endif /* IncludeStdlibH.proto (used by CIntToPyUnicode) */ #include /* CIntToPyUnicode.proto */ #define __Pyx_PyUnicode_From_long(value, width, padding_char, format_char) (\ ((format_char) == ('c')) ?\ __Pyx_uchar___Pyx_PyUnicode_From_long(value, width, padding_char) :\ __Pyx____Pyx_PyUnicode_From_long(value, width, padding_char, format_char)\ ) static CYTHON_INLINE PyObject* __Pyx_uchar___Pyx_PyUnicode_From_long(long value, Py_ssize_t width, char padding_char); static CYTHON_INLINE PyObject* __Pyx____Pyx_PyUnicode_From_long(long value, Py_ssize_t width, char padding_char, char format_char); /* PyDictVersioning.proto (used by GetModuleGlobalName) */ #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_TYPE_SLOTS #define __PYX_DICT_VERSION_INIT ((PY_UINT64_T) -1) #define __PYX_GET_DICT_VERSION(dict) (((PyDictObject*)(dict))->ma_version_tag) #define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var)\ (version_var) = __PYX_GET_DICT_VERSION(dict);\ (cache_var) = (value); #define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) {\ static PY_UINT64_T __pyx_dict_version = 0;\ static PyObject *__pyx_dict_cached_value = NULL;\ if (likely(__PYX_GET_DICT_VERSION(DICT) == __pyx_dict_version)) {\ (VAR) = __Pyx_XNewRef(__pyx_dict_cached_value);\ } else {\ (VAR) = __pyx_dict_cached_value = (LOOKUP);\ __pyx_dict_version = __PYX_GET_DICT_VERSION(DICT);\ }\ } static CYTHON_INLINE PY_UINT64_T __Pyx_get_tp_dict_version(PyObject *obj); static CYTHON_INLINE PY_UINT64_T __Pyx_get_object_dict_version(PyObject *obj); static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version); #else #define __PYX_GET_DICT_VERSION(dict) (0) #define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var) #define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) (VAR) = (LOOKUP); #endif /* GetModuleGlobalName.proto */ #if CYTHON_USE_DICT_VERSIONS #define __Pyx_GetModuleGlobalName(var, name) do {\ static PY_UINT64_T __pyx_dict_version = 0;\ static PyObject *__pyx_dict_cached_value = NULL;\ (var) = (likely(__pyx_dict_version == __PYX_GET_DICT_VERSION(__pyx_mstate_global->__pyx_d))) ?\ (likely(__pyx_dict_cached_value) ? __Pyx_NewRef(__pyx_dict_cached_value) : __Pyx_GetBuiltinName(name)) :\ __Pyx__GetModuleGlobalName(name, &__pyx_dict_version, &__pyx_dict_cached_value);\ } while(0) #define __Pyx_GetModuleGlobalNameUncached(var, name) do {\ PY_UINT64_T __pyx_dict_version;\ PyObject *__pyx_dict_cached_value;\ (var) = __Pyx__GetModuleGlobalName(name, &__pyx_dict_version, &__pyx_dict_cached_value);\ } while(0) static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value); #else #define __Pyx_GetModuleGlobalName(var, name) (var) = __Pyx__GetModuleGlobalName(name) #define __Pyx_GetModuleGlobalNameUncached(var, name) (var) = __Pyx__GetModuleGlobalName(name) static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name); #endif /* PyObject_Unicode.proto */ #define __Pyx_PyObject_Unicode(obj)\ (likely(PyUnicode_CheckExact(obj)) ? __Pyx_NewRef(obj) : PyObject_Str(obj)) /* JoinPyUnicode.export */ static PyObject* __Pyx_PyUnicode_Join(PyObject** values, Py_ssize_t value_count, Py_ssize_t result_ulength, Py_UCS4 max_char); /* PyNotImplementedError_Check.proto */ #define __Pyx_PyExc_NotImplementedError_Check(obj) __Pyx_TypeCheck(obj, PyExc_NotImplementedError) /* PyTypeError_Check.proto */ #define __Pyx_PyExc_TypeError_Check(obj) __Pyx_TypeCheck(obj, PyExc_TypeError) /* PyObjectVectorCallKwBuilder.proto */ CYTHON_UNUSED static int __Pyx_VectorcallBuilder_AddArg_Check(PyObject *key, PyObject *value, PyObject *builder, PyObject **args, int n); #if CYTHON_VECTORCALL #if PY_VERSION_HEX >= 0x03090000 #define __Pyx_Object_Vectorcall_CallFromBuilder PyObject_Vectorcall #else #define __Pyx_Object_Vectorcall_CallFromBuilder _PyObject_Vectorcall #endif #define __Pyx_MakeVectorcallBuilderKwds(n) PyTuple_New(n) static int __Pyx_VectorcallBuilder_AddArg(PyObject *key, PyObject *value, PyObject *builder, PyObject **args, int n); static int __Pyx_VectorcallBuilder_AddArgStr(const char *key, PyObject *value, PyObject *builder, PyObject **args, int n); #else #define __Pyx_Object_Vectorcall_CallFromBuilder __Pyx_PyObject_FastCallDict #define __Pyx_MakeVectorcallBuilderKwds(n) __Pyx_PyDict_NewPresized(n) #define __Pyx_VectorcallBuilder_AddArg(key, value, builder, args, n) PyDict_SetItem(builder, key, value) #define __Pyx_VectorcallBuilder_AddArgStr(key, value, builder, args, n) PyDict_SetItemString(builder, key, value) #endif /* SliceObject.proto */ #define __Pyx_PyObject_DelSlice(obj, cstart, cstop, py_start, py_stop, py_slice, has_cstart, has_cstop, wraparound)\ __Pyx_PyObject_SetSlice(obj, (PyObject*)NULL, cstart, cstop, py_start, py_stop, py_slice, has_cstart, has_cstop, wraparound) static CYTHON_INLINE int __Pyx_PyObject_SetSlice( PyObject* obj, PyObject* value, Py_ssize_t cstart, Py_ssize_t cstop, PyObject** py_start, PyObject** py_stop, PyObject** py_slice, int has_cstart, int has_cstop, int wraparound); /* PyObjectVectorCallMethodKwBuilder.proto */ #if CYTHON_VECTORCALL && PY_VERSION_HEX >= 0x03090000 #define __Pyx_Object_VectorcallMethod_CallFromBuilder PyObject_VectorcallMethod #else static PyObject *__Pyx_Object_VectorcallMethod_CallFromBuilder(PyObject *name, PyObject *const *args, size_t nargsf, PyObject *kwnames); #endif /* PyLongCompare.proto */ static CYTHON_INLINE int __Pyx_PyLong_BoolEqObjC(PyObject *op1, PyObject *op2, long intval, long inplace); /* PyIndexError_Check.proto */ #define __Pyx_PyExc_IndexError_Check(obj) __Pyx_TypeCheck(obj, PyExc_IndexError) /* ExtTypeTest.proto */ static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); /* SliceObject.proto */ static CYTHON_INLINE PyObject* __Pyx_PyObject_GetSlice( PyObject* obj, Py_ssize_t cstart, Py_ssize_t cstop, PyObject** py_start, PyObject** py_stop, PyObject** py_slice, int has_cstart, int has_cstop, int wraparound); /* GetItemInt.proto */ #define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck, has_gil, unsafe_shared)\ (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck, unsafe_shared) :\ (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) :\ __Pyx_GetItemInt_Generic(o, to_py_func(i)))) #define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck, has_gil, unsafe_shared)\ (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck, unsafe_shared) :\ (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL)) static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, int wraparound, int boundscheck, int unsafe_shared); #define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck, has_gil, unsafe_shared)\ (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck, unsafe_shared) :\ (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL)) static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, int wraparound, int boundscheck, int unsafe_shared); static PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j); static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list, int wraparound, int boundscheck, int unsafe_shared); /* PySliceAccessors.proto */ #if CYTHON_COMPILING_IN_LIMITED_API #define __Pyx_PySlice_Start(o) PyObject_GetAttr(o, __pyx_mstate_global->__pyx_n_u_start) #define __Pyx_PySlice_Stop(o) PyObject_GetAttr(o, __pyx_mstate_global->__pyx_n_u_stop) #define __Pyx_PySlice_Step(o) PyObject_GetAttr(o, __pyx_mstate_global->__pyx_n_u_step) #elif CYTHON_COMPILING_IN_GRAAL && defined(GRAALPY_VERSION_NUM) && GRAALPY_VERSION_NUM > 0x19000000 #define __Pyx_PySlice_Start(o) GraalPySlice_Start(o) #define __Pyx_PySlice_Stop(o) GraalPySlice_Stop(o) #define __Pyx_PySlice_Step(o) GraalPySlice_Step(o) #elif CYTHON_COMPILING_IN_GRAAL #define __Pyx_PySlice_Start(o) __Pyx_NewRef(PySlice_Start((PySliceObject*)o)) #define __Pyx_PySlice_Stop(o) __Pyx_NewRef(PySlice_Stop((PySliceObject*)o)) #define __Pyx_PySlice_Step(o) __Pyx_NewRef(PySlice_Step((PySliceObject*)o)) #else #define __Pyx_PySlice_Start(o) __Pyx_NewRef(((PySliceObject*)o)->start) #define __Pyx_PySlice_Stop(o) __Pyx_NewRef(((PySliceObject*)o)->stop) #define __Pyx_PySlice_Step(o) __Pyx_NewRef(((PySliceObject*)o)->step) #endif /* PyKeyError_Check.proto */ #define __Pyx_PyExc_KeyError_Check(obj) __Pyx_TypeCheck(obj, PyExc_KeyError) /* RaiseClosureNameError.proto */ static void __Pyx_RaiseClosureNameError(const char *varname); /* dict_setdefault.proto (used by FetchCommonType) */ static CYTHON_INLINE PyObject *__Pyx_PyDict_SetDefault(PyObject *d, PyObject *key, PyObject *default_value); /* LimitedApiGetTypeDict.proto (used by SetItemOnTypeDict) */ #if CYTHON_COMPILING_IN_LIMITED_API static PyObject *__Pyx_GetTypeDict(PyTypeObject *tp); #endif /* SetItemOnTypeDict.proto (used by FixUpExtensionType) */ static int __Pyx__SetItemOnTypeDict(PyTypeObject *tp, PyObject *k, PyObject *v); #define __Pyx_SetItemOnTypeDict(tp, k, v) __Pyx__SetItemOnTypeDict((PyTypeObject*)tp, k, v) /* FixUpExtensionType.proto (used by FetchCommonType) */ static CYTHON_INLINE int __Pyx_fix_up_extension_type_from_spec(PyType_Spec *spec, PyTypeObject *type); /* AddModuleRef.proto (used by FetchSharedCythonModule) */ #if ((CYTHON_COMPILING_IN_CPYTHON_FREETHREADING ) ||\ __PYX_LIMITED_VERSION_HEX < 0x030d0000) static PyObject *__Pyx_PyImport_AddModuleRef(const char *name); #else #define __Pyx_PyImport_AddModuleRef(name) PyImport_AddModuleRef(name) #endif /* FetchSharedCythonModule.proto (used by FetchCommonType) */ static PyObject *__Pyx_FetchSharedCythonABIModule(void); /* FetchCommonType.proto (used by CommonTypesMetaclass) */ static PyTypeObject* __Pyx_FetchCommonTypeFromSpec(PyTypeObject *metaclass, PyObject *module, PyType_Spec *spec, PyObject *bases); /* CommonTypesMetaclass.proto (used by CythonFunctionShared) */ static int __pyx_CommonTypesMetaclass_init(PyObject *module); #define __Pyx_CommonTypesMetaclass_USED /* CallTypeTraverse.proto (used by CythonFunctionShared) */ #if !CYTHON_USE_TYPE_SPECS || (!CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x03090000) #define __Pyx_call_type_traverse(o, always_call, visit, arg) 0 #else static int __Pyx_call_type_traverse(PyObject *o, int always_call, visitproc visit, void *arg); #endif /* PyMethodNew.proto (used by CythonFunctionShared) */ static PyObject *__Pyx_PyMethod_New(PyObject *func, PyObject *self, PyObject *typ); /* PyVectorcallFastCallDict.proto (used by CythonFunctionShared) */ #if CYTHON_METH_FASTCALL && CYTHON_VECTORCALL static CYTHON_INLINE PyObject *__Pyx_PyVectorcall_FastCallDict(PyObject *func, __pyx_vectorcallfunc vc, PyObject *const *args, size_t nargs, PyObject *kw); #endif /* CythonFunctionShared.proto (used by CythonFunction) */ #define __Pyx_CyFunction_USED #define __Pyx_CYFUNCTION_STATICMETHOD 0x01 #define __Pyx_CYFUNCTION_CLASSMETHOD 0x02 #define __Pyx_CYFUNCTION_CCLASS 0x04 #define __Pyx_CYFUNCTION_COROUTINE 0x08 #define __Pyx_CyFunction_GetClosure(f)\ (((__pyx_CyFunctionObject *) (f))->func_closure) #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API #define __Pyx_CyFunction_GetClassObj(f)\ (((__pyx_CyFunctionObject *) (f))->func_classobj) #else #define __Pyx_CyFunction_GetClassObj(f)\ ((PyObject*) ((PyCMethodObject *) (f))->mm_class) #endif #define __Pyx_CyFunction_SetClassObj(f, classobj)\ __Pyx__CyFunction_SetClassObj((__pyx_CyFunctionObject *) (f), (classobj)) #define __Pyx_CyFunction_Defaults(type, f)\ ((type *)(((__pyx_CyFunctionObject *) (f))->defaults)) #define __Pyx_CyFunction_SetDefaultsGetter(f, g)\ ((__pyx_CyFunctionObject *) (f))->defaults_getter = (g) typedef struct { #if CYTHON_COMPILING_IN_LIMITED_API PyObject_HEAD PyObject *func; #elif PY_VERSION_HEX < 0x030900B1 PyCFunctionObject func; #else PyCMethodObject func; #endif #if CYTHON_COMPILING_IN_LIMITED_API && CYTHON_METH_FASTCALL __pyx_vectorcallfunc func_vectorcall; #endif #if CYTHON_COMPILING_IN_LIMITED_API PyObject *func_weakreflist; #endif #if PY_VERSION_HEX < 0x030C0000 || CYTHON_COMPILING_IN_LIMITED_API PyObject *func_dict; #endif PyObject *func_name; PyObject *func_qualname; PyObject *func_doc; PyObject *func_globals; PyObject *func_code; PyObject *func_closure; #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API PyObject *func_classobj; #endif PyObject *defaults; int flags; PyObject *defaults_tuple; PyObject *defaults_kwdict; PyObject *(*defaults_getter)(PyObject *); PyObject *func_annotations; PyObject *func_is_coroutine; } __pyx_CyFunctionObject; #undef __Pyx_CyOrPyCFunction_Check #define __Pyx_CyFunction_Check(obj) __Pyx_TypeCheck(obj, __pyx_mstate_global->__pyx_CyFunctionType) #define __Pyx_CyOrPyCFunction_Check(obj) __Pyx_TypeCheck2(obj, __pyx_mstate_global->__pyx_CyFunctionType, &PyCFunction_Type) #define __Pyx_CyFunction_CheckExact(obj) __Pyx_IS_TYPE(obj, __pyx_mstate_global->__pyx_CyFunctionType) static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void (*cfunc)(void)); #undef __Pyx_IsSameCFunction #define __Pyx_IsSameCFunction(func, cfunc) __Pyx__IsSameCyOrCFunction(func, cfunc) static PyObject *__Pyx_CyFunction_Init(__pyx_CyFunctionObject* op, PyMethodDef *ml, int flags, PyObject* qualname, PyObject *closure, PyObject *module, PyObject *globals, PyObject* code); static CYTHON_INLINE void __Pyx__CyFunction_SetClassObj(__pyx_CyFunctionObject* f, PyObject* classobj); static CYTHON_INLINE PyObject *__Pyx_CyFunction_InitDefaults(PyObject *func, PyTypeObject *defaults_type); static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *m, PyObject *tuple); static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *m, PyObject *dict); static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *m, PyObject *dict); static int __pyx_CyFunction_init(PyObject *module); #if CYTHON_METH_FASTCALL static PyObject * __Pyx_CyFunction_Vectorcall_NOARGS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); static PyObject * __Pyx_CyFunction_Vectorcall_O(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS_METHOD(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); #if CYTHON_COMPILING_IN_LIMITED_API #define __Pyx_CyFunction_func_vectorcall(f) (((__pyx_CyFunctionObject*)f)->func_vectorcall) #else #define __Pyx_CyFunction_func_vectorcall(f) (((PyCFunctionObject*)f)->vectorcall) #endif #endif /* CythonFunction.proto */ static PyObject *__Pyx_CyFunction_New(PyMethodDef *ml, int flags, PyObject* qualname, PyObject *closure, PyObject *module, PyObject *globals, PyObject* code); /* AssertionsEnabled.proto */ #if CYTHON_COMPILING_IN_LIMITED_API || PY_VERSION_HEX >= 0x030C0000 static int __pyx_assertions_enabled_flag; #define __pyx_assertions_enabled() (__pyx_assertions_enabled_flag) #if __clang__ || __GNUC__ __attribute__((no_sanitize("thread"))) #endif static int __Pyx_init_assertions_enabled(void) { PyObject *builtins, *debug, *debug_str; int flag; builtins = PyEval_GetBuiltins(); if (!builtins) goto bad; debug_str = PyUnicode_FromStringAndSize("__debug__", 9); if (!debug_str) goto bad; debug = PyObject_GetItem(builtins, debug_str); Py_DECREF(debug_str); if (!debug) goto bad; flag = PyObject_IsTrue(debug); Py_DECREF(debug); if (flag == -1) goto bad; __pyx_assertions_enabled_flag = flag; return 0; bad: __pyx_assertions_enabled_flag = 1; return -1; } #else #define __Pyx_init_assertions_enabled() (0) #define __pyx_assertions_enabled() (!Py_OptimizeFlag) #endif /* PyAssertionError_Check.proto */ #define __Pyx_PyExc_AssertionError_Check(obj) __Pyx_TypeCheck(obj, PyExc_AssertionError) /* ListCompAppend.proto */ #if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS static CYTHON_INLINE int __Pyx_ListComp_Append(PyObject* list, PyObject* x) { PyListObject* L = (PyListObject*) list; Py_ssize_t len = Py_SIZE(list); if (likely(L->allocated > len)) { Py_INCREF(x); #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000 L->ob_item[len] = x; #else PyList_SET_ITEM(list, len, x); #endif __Pyx_SET_SIZE(list, len + 1); return 0; } return PyList_Append(list, x); } #else #define __Pyx_ListComp_Append(L,x) PyList_Append(L,x) #endif /* ObjectGetItem.proto */ #if CYTHON_USE_TYPE_SLOTS static CYTHON_INLINE PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject *key); #else #define __Pyx_PyObject_GetItem(obj, key) PyObject_GetItem(obj, key) #endif /* PyDictContains.proto */ static CYTHON_INLINE int __Pyx_PyDict_ContainsTF(PyObject* item, PyObject* dict, int eq) { int result = PyDict_Contains(dict, item); return unlikely(result < 0) ? result : (result == (eq == Py_EQ)); } /* DictGetItem.proto */ #if !CYTHON_COMPILING_IN_PYPY static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key); #define __Pyx_PyObject_Dict_GetItem(obj, name)\ (likely(PyDict_CheckExact(obj)) ?\ __Pyx_PyDict_GetItem(obj, name) : PyObject_GetItem(obj, name)) #else #define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key) #define __Pyx_PyObject_Dict_GetItem(obj, name) PyObject_GetItem(obj, name) #endif /* HasAttr.proto */ #if __PYX_LIMITED_VERSION_HEX >= 0x030d0000 #define __Pyx_HasAttr(o, n) PyObject_HasAttrWithError(o, n) #else static CYTHON_INLINE int __Pyx_HasAttr(PyObject *, PyObject *); #endif /* unicode_tailmatch.proto */ static int __Pyx_PyUnicode_Tailmatch( PyObject* s, PyObject* substr, Py_ssize_t start, Py_ssize_t end, int direction); /* PyObjectCallNoArg.proto (used by PyObjectCallMethod0) */ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func); /* PyObjectGetMethod.proto (used by PyObjectCallMethod0) */ #if !(CYTHON_VECTORCALL && (__PYX_LIMITED_VERSION_HEX >= 0x030C0000 || (!CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x03090000))) static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **method); #endif /* PyObjectCallMethod0.proto (used by dict_iter) */ static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name); /* RaiseNoneIterError.proto (used by UnpackTupleError) */ static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void); /* UnpackTupleError.proto (used by UnpackTuple2) */ static void __Pyx_UnpackTupleError(PyObject *, Py_ssize_t index); /* UnpackTuple2.proto (used by dict_iter) */ static CYTHON_INLINE int __Pyx_unpack_tuple2( PyObject* tuple, PyObject** value1, PyObject** value2, int is_tuple, int has_known_size, int decref_tuple); static CYTHON_INLINE int __Pyx_unpack_tuple2_exact( PyObject* tuple, PyObject** value1, PyObject** value2, int decref_tuple); static int __Pyx_unpack_tuple2_generic( PyObject* tuple, PyObject** value1, PyObject** value2, int has_known_size, int decref_tuple); /* dict_iter.proto */ static CYTHON_INLINE PyObject* __Pyx_dict_iterator(PyObject* dict, int is_dict, PyObject* method_name, Py_ssize_t* p_orig_length, int* p_is_dict); static CYTHON_INLINE int __Pyx_dict_iter_next(PyObject* dict_or_iter, Py_ssize_t orig_length, Py_ssize_t* ppos, PyObject** pkey, PyObject** pvalue, PyObject** pitem, int is_dict); /* PyLongBinop.proto */ #if !CYTHON_COMPILING_IN_PYPY static CYTHON_INLINE PyObject* __Pyx_PyLong_SubtractObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check); #else #define __Pyx_PyLong_SubtractObjC(op1, op2, intval, inplace, zerodivision_check)\ (inplace ? PyNumber_InPlaceSubtract(op1, op2) : PyNumber_Subtract(op1, op2)) #endif /* SwapException.proto */ #if CYTHON_FAST_THREAD_STATE #define __Pyx_ExceptionSwap(type, value, tb) __Pyx__ExceptionSwap(__pyx_tstate, type, value, tb) static CYTHON_INLINE void __Pyx__ExceptionSwap(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); #else static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb); #endif /* ListAppend.proto */ #if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) { PyListObject* L = (PyListObject*) list; Py_ssize_t len = Py_SIZE(list); if (likely(L->allocated > len) & likely(len > (L->allocated >> 1))) { Py_INCREF(x); #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000 L->ob_item[len] = x; #else PyList_SET_ITEM(list, len, x); #endif __Pyx_SET_SIZE(list, len + 1); return 0; } return PyList_Append(list, x); } #else #define __Pyx_PyList_Append(L,x) PyList_Append(L,x) #endif /* PyIOError_Check.proto */ #define __Pyx_PyExc_IOError_Check(obj) __Pyx_TypeCheck(obj, PyExc_IOError) /* pybytes_as_double.proto (used by pynumber_float) */ static double __Pyx_SlowPyString_AsDouble(PyObject *obj); static double __Pyx__PyBytes_AsDouble(PyObject *obj, const char* start, Py_ssize_t length); static CYTHON_INLINE double __Pyx_PyBytes_AsDouble(PyObject *obj) { char* as_c_string; Py_ssize_t size; #if CYTHON_ASSUME_SAFE_MACROS && CYTHON_ASSUME_SAFE_SIZE as_c_string = PyBytes_AS_STRING(obj); size = PyBytes_GET_SIZE(obj); #else if (PyBytes_AsStringAndSize(obj, &as_c_string, &size) < 0) { return (double)-1; } #endif return __Pyx__PyBytes_AsDouble(obj, as_c_string, size); } static CYTHON_INLINE double __Pyx_PyByteArray_AsDouble(PyObject *obj) { char* as_c_string; Py_ssize_t size; #if CYTHON_ASSUME_SAFE_MACROS && CYTHON_ASSUME_SAFE_SIZE as_c_string = PyByteArray_AS_STRING(obj); size = PyByteArray_GET_SIZE(obj); #else as_c_string = PyByteArray_AsString(obj); if (as_c_string == NULL) { return (double)-1; } size = PyByteArray_Size(obj); #endif return __Pyx__PyBytes_AsDouble(obj, as_c_string, size); } /* pyunicode_as_double.proto (used by pynumber_float) */ #if !CYTHON_COMPILING_IN_PYPY && CYTHON_ASSUME_SAFE_MACROS static const char* __Pyx__PyUnicode_AsDouble_Copy(const void* data, const int kind, char* buffer, Py_ssize_t start, Py_ssize_t end) { int last_was_punctuation; Py_ssize_t i; last_was_punctuation = 1; for (i=start; i <= end; i++) { Py_UCS4 chr = PyUnicode_READ(kind, data, i); int is_punctuation = (chr == '_') | (chr == '.'); *buffer = (char)chr; buffer += (chr != '_'); if (unlikely(chr > 127)) goto parse_failure; if (unlikely(last_was_punctuation & is_punctuation)) goto parse_failure; last_was_punctuation = is_punctuation; } if (unlikely(last_was_punctuation)) goto parse_failure; *buffer = '\0'; return buffer; parse_failure: return NULL; } static double __Pyx__PyUnicode_AsDouble_inf_nan(const void* data, int kind, Py_ssize_t start, Py_ssize_t length) { int matches = 1; Py_UCS4 chr; Py_UCS4 sign = PyUnicode_READ(kind, data, start); int is_signed = (sign == '-') | (sign == '+'); start += is_signed; length -= is_signed; switch (PyUnicode_READ(kind, data, start)) { #ifdef Py_NAN case 'n': case 'N': if (unlikely(length != 3)) goto parse_failure; chr = PyUnicode_READ(kind, data, start+1); matches &= (chr == 'a') | (chr == 'A'); chr = PyUnicode_READ(kind, data, start+2); matches &= (chr == 'n') | (chr == 'N'); if (unlikely(!matches)) goto parse_failure; return (sign == '-') ? -Py_NAN : Py_NAN; #endif case 'i': case 'I': if (unlikely(length < 3)) goto parse_failure; chr = PyUnicode_READ(kind, data, start+1); matches &= (chr == 'n') | (chr == 'N'); chr = PyUnicode_READ(kind, data, start+2); matches &= (chr == 'f') | (chr == 'F'); if (likely(length == 3 && matches)) return (sign == '-') ? -Py_HUGE_VAL : Py_HUGE_VAL; if (unlikely(length != 8)) goto parse_failure; chr = PyUnicode_READ(kind, data, start+3); matches &= (chr == 'i') | (chr == 'I'); chr = PyUnicode_READ(kind, data, start+4); matches &= (chr == 'n') | (chr == 'N'); chr = PyUnicode_READ(kind, data, start+5); matches &= (chr == 'i') | (chr == 'I'); chr = PyUnicode_READ(kind, data, start+6); matches &= (chr == 't') | (chr == 'T'); chr = PyUnicode_READ(kind, data, start+7); matches &= (chr == 'y') | (chr == 'Y'); if (unlikely(!matches)) goto parse_failure; return (sign == '-') ? -Py_HUGE_VAL : Py_HUGE_VAL; case '.': case '0': case '1': case '2': case '3': case '4': case '5': case '6': case '7': case '8': case '9': break; default: goto parse_failure; } return 0.0; parse_failure: return -1.0; } static double __Pyx_PyUnicode_AsDouble_WithSpaces(PyObject *obj) { double value; const char *last; char *end; Py_ssize_t start, length = PyUnicode_GET_LENGTH(obj); const int kind = PyUnicode_KIND(obj); const void* data = PyUnicode_DATA(obj); start = 0; while (Py_UNICODE_ISSPACE(PyUnicode_READ(kind, data, start))) start++; while (start < length - 1 && Py_UNICODE_ISSPACE(PyUnicode_READ(kind, data, length - 1))) length--; length -= start; if (unlikely(length <= 0)) goto fallback; value = __Pyx__PyUnicode_AsDouble_inf_nan(data, kind, start, length); if (unlikely(value == -1.0)) goto fallback; if (value != 0.0) return value; if (length < 40) { char number[40]; last = __Pyx__PyUnicode_AsDouble_Copy(data, kind, number, start, start + length); if (unlikely(!last)) goto fallback; value = PyOS_string_to_double(number, &end, NULL); } else { char *number = (char*) PyMem_Malloc((length + 1) * sizeof(char)); if (unlikely(!number)) goto fallback; last = __Pyx__PyUnicode_AsDouble_Copy(data, kind, number, start, start + length); if (unlikely(!last)) { PyMem_Free(number); goto fallback; } value = PyOS_string_to_double(number, &end, NULL); PyMem_Free(number); } if (likely(end == last) || (value == (double)-1 && PyErr_Occurred())) { return value; } fallback: return __Pyx_SlowPyString_AsDouble(obj); } #endif static CYTHON_INLINE double __Pyx_PyUnicode_AsDouble(PyObject *obj) { #if !CYTHON_COMPILING_IN_PYPY && CYTHON_ASSUME_SAFE_MACROS if (unlikely(__Pyx_PyUnicode_READY(obj) == -1)) return (double)-1; if (likely(PyUnicode_IS_ASCII(obj))) { const char *s; Py_ssize_t length; s = PyUnicode_AsUTF8AndSize(obj, &length); return __Pyx__PyBytes_AsDouble(obj, s, length); } return __Pyx_PyUnicode_AsDouble_WithSpaces(obj); #else return __Pyx_SlowPyString_AsDouble(obj); #endif } /* pynumber_float.proto */ static CYTHON_INLINE PyObject* __Pyx__PyNumber_Float(PyObject* obj); #define __Pyx_PyNumber_Float(x) (PyFloat_CheckExact(x) ? __Pyx_NewRef(x) : __Pyx__PyNumber_Float(x)) /* PyObjectFormatSimple.proto */ #if CYTHON_COMPILING_IN_PYPY #define __Pyx_PyObject_FormatSimple(s, f) (\ likely(PyUnicode_CheckExact(s)) ? (Py_INCREF(s), s) :\ PyObject_Format(s, f)) #elif CYTHON_USE_TYPE_SLOTS #define __Pyx_PyObject_FormatSimple(s, f) (\ likely(PyUnicode_CheckExact(s)) ? (Py_INCREF(s), s) :\ likely(PyLong_CheckExact(s)) ? PyLong_Type.tp_repr(s) :\ likely(PyFloat_CheckExact(s)) ? PyFloat_Type.tp_repr(s) :\ PyObject_Format(s, f)) #else #define __Pyx_PyObject_FormatSimple(s, f) (\ likely(PyUnicode_CheckExact(s)) ? (Py_INCREF(s), s) :\ PyObject_Format(s, f)) #endif /* PyObjectCall2Args.proto (used by PyObjectCallMethod1) */ static CYTHON_INLINE PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2); /* PyObjectCallMethod1.proto (used by append) */ static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg); /* append.proto */ static CYTHON_INLINE int __Pyx_PyObject_Append(PyObject* L, PyObject* x); /* ImportImpl.export */ static PyObject *__Pyx__Import(PyObject *name, PyObject *const *imported_names, Py_ssize_t len_imported_names, PyObject *qualname, PyObject *moddict, int level); /* Import.proto */ static CYTHON_INLINE PyObject *__Pyx_Import(PyObject *name, PyObject *const *imported_names, Py_ssize_t len_imported_names, PyObject *qualname, int level); /* PyObjectLookupSpecial.proto */ #if CYTHON_USE_PYTYPE_LOOKUP && CYTHON_USE_TYPE_SLOTS #define __Pyx_PyObject_LookupSpecialNoError(obj, attr_name) __Pyx__PyObject_LookupSpecial(obj, attr_name, 0) #define __Pyx_PyObject_LookupSpecial(obj, attr_name) __Pyx__PyObject_LookupSpecial(obj, attr_name, 1) static CYTHON_INLINE PyObject* __Pyx__PyObject_LookupSpecial(PyObject* obj, PyObject* attr_name, int with_error); #else #define __Pyx_PyObject_LookupSpecialNoError(o,n) __Pyx_PyObject_GetAttrStrNoError(o,n) #define __Pyx_PyObject_LookupSpecial(o,n) __Pyx_PyObject_GetAttrStr(o,n) #endif /* ImportFrom.proto */ static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name); /* PyLongBinop.proto */ #if !CYTHON_COMPILING_IN_PYPY static CYTHON_INLINE PyObject* __Pyx_PyLong_AddObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check); #else #define __Pyx_PyLong_AddObjC(op1, op2, intval, inplace, zerodivision_check)\ (inplace ? PyNumber_InPlaceAdd(op1, op2) : PyNumber_Add(op1, op2)) #endif /* RaiseUnboundLocalError.proto */ static void __Pyx_RaiseUnboundLocalError(const char *varname); /* decode_c_string_utf16.proto (used by decode_c_bytes) */ static CYTHON_INLINE PyObject *__Pyx_PyUnicode_DecodeUTF16(const char *s, Py_ssize_t size, const char *errors) { int byteorder = 0; return PyUnicode_DecodeUTF16(s, size, errors, &byteorder); } static CYTHON_INLINE PyObject *__Pyx_PyUnicode_DecodeUTF16LE(const char *s, Py_ssize_t size, const char *errors) { int byteorder = -1; return PyUnicode_DecodeUTF16(s, size, errors, &byteorder); } static CYTHON_INLINE PyObject *__Pyx_PyUnicode_DecodeUTF16BE(const char *s, Py_ssize_t size, const char *errors) { int byteorder = 1; return PyUnicode_DecodeUTF16(s, size, errors, &byteorder); } /* decode_c_bytes.proto (used by decode_bytes) */ static CYTHON_INLINE PyObject* __Pyx_decode_c_bytes( const char* cstring, Py_ssize_t length, Py_ssize_t start, Py_ssize_t stop, const char* encoding, const char* errors, PyObject* (*decode_func)(const char *s, Py_ssize_t size, const char *errors)); /* decode_bytes.proto */ static CYTHON_INLINE PyObject* __Pyx_decode_bytes( PyObject* string, Py_ssize_t start, Py_ssize_t stop, const char* encoding, const char* errors, PyObject* (*decode_func)(const char *s, Py_ssize_t size, const char *errors)) { char* as_c_string; Py_ssize_t size; #if CYTHON_ASSUME_SAFE_MACROS && CYTHON_ASSUME_SAFE_SIZE as_c_string = PyBytes_AS_STRING(string); size = PyBytes_GET_SIZE(string); #else if (PyBytes_AsStringAndSize(string, &as_c_string, &size) < 0) { return NULL; } #endif return __Pyx_decode_c_bytes( as_c_string, size, start, stop, encoding, errors, decode_func); } /* CIntToPyUnicode.proto */ #define __Pyx_PyUnicode_From_Py_ssize_t(value, width, padding_char, format_char) (\ ((format_char) == ('c')) ?\ __Pyx_uchar___Pyx_PyUnicode_From_Py_ssize_t(value, width, padding_char) :\ __Pyx____Pyx_PyUnicode_From_Py_ssize_t(value, width, padding_char, format_char)\ ) static CYTHON_INLINE PyObject* __Pyx_uchar___Pyx_PyUnicode_From_Py_ssize_t(Py_ssize_t value, Py_ssize_t width, char padding_char); static CYTHON_INLINE PyObject* __Pyx____Pyx_PyUnicode_From_Py_ssize_t(Py_ssize_t value, Py_ssize_t width, char padding_char, char format_char); /* UnicodeConcatInPlace.proto */ # if CYTHON_COMPILING_IN_CPYTHON #if CYTHON_REFNANNY #define __Pyx_PyUnicode_ConcatInPlace(left, right, unsafe_shared) __Pyx_PyUnicode_ConcatInPlaceImpl(&left, right, unsafe_shared, __pyx_refnanny) #else #define __Pyx_PyUnicode_ConcatInPlace(left, right, unsafe_shared) __Pyx_PyUnicode_ConcatInPlaceImpl(&left, right, unsafe_shared) #endif #define __Pyx_PyUnicode_Concat__Pyx_ReferenceSharing_DefinitelyUniqueInPlace(left, right) __Pyx_PyUnicode_ConcatInPlace(left, right, __Pyx_ReferenceSharing_DefinitelyUnique) #define __Pyx_PyUnicode_Concat__Pyx_ReferenceSharing_OwnStrongReferenceInPlace(left, right) __Pyx_PyUnicode_ConcatInPlace(left, right, __Pyx_ReferenceSharing_OwnStrongReference) #define __Pyx_PyUnicode_Concat__Pyx_ReferenceSharing_FunctionArgumentInPlace(left, right) __Pyx_PyUnicode_ConcatInPlace(left, right, __Pyx_ReferenceSharing_DefinitelyUnique) #define __Pyx_PyUnicode_Concat__Pyx_ReferenceSharing_SharedReferenceInPlace(left, right) __Pyx_PyUnicode_ConcatInPlace(left, right, __Pyx_ReferenceSharing_SharedReference) static CYTHON_INLINE PyObject *__Pyx_PyUnicode_ConcatInPlaceImpl(PyObject **p_left, PyObject *right, int unsafe_shared #if CYTHON_REFNANNY , void* __pyx_refnanny #endif ); #else #define __Pyx_PyUnicode_Concat__Pyx_ReferenceSharing_DefinitelyUniqueInPlace __Pyx_PyUnicode_Concat #define __Pyx_PyUnicode_Concat__Pyx_ReferenceSharing_OwnStrongReferenceInPlace __Pyx_PyUnicode_Concat #define __Pyx_PyUnicode_Concat__Pyx_ReferenceSharing_FunctionArgumentInPlace __Pyx_PyUnicode_Concat #define __Pyx_PyUnicode_Concat__Pyx_ReferenceSharing_SharedReferenceInPlace __Pyx_PyUnicode_Concat #endif #define __Pyx_PyUnicode_Concat__Pyx_ReferenceSharing_DefinitelyUniqueInPlaceSafe(left, right)\ ((unlikely((left) == Py_None) || unlikely((right) == Py_None)) ?\ PyNumber_InPlaceAdd(left, right) : __Pyx_PyUnicode_Concat__Pyx_ReferenceSharing_DefinitelyUniqueInPlace(left, right)) #define __Pyx_PyUnicode_Concat__Pyx_ReferenceSharing_OwnStrongReferenceInPlaceSafe(left, right)\ ((unlikely((left) == Py_None) || unlikely((right) == Py_None)) ?\ PyNumber_InPlaceAdd(left, right) : __Pyx_PyUnicode_Concat__Pyx_ReferenceSharing_OwnStrongReferenceInPlace(left, right)) #define __Pyx_PyUnicode_Concat__Pyx_ReferenceSharing_FunctionArgumentInPlaceSafe(left, right)\ ((unlikely((left) == Py_None) || unlikely((right) == Py_None)) ?\ PyNumber_InPlaceAdd(left, right) : __Pyx_PyUnicode_Concat__Pyx_ReferenceSharing_FunctionArgumentInPlace(left, right)) #define __Pyx_PyUnicode_Concat__Pyx_ReferenceSharing_SharedReferenceInPlaceSafe(left, right)\ ((unlikely((left) == Py_None) || unlikely((right) == Py_None)) ?\ PyNumber_InPlaceAdd(left, right) : __Pyx_PyUnicode_Concat__Pyx_ReferenceSharing_SharedReferenceInPlace(left, right)) /* IsLittleEndian.proto (used by BufferFormatCheck) */ static CYTHON_INLINE int __Pyx_Is_Little_Endian(void); /* BufferFormatCheck.proto (used by BufferGetAndValidate) */ static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts); static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, __Pyx_BufFmt_StackElem* stack, const __Pyx_TypeInfo* type); /* BufferGetAndValidate.proto */ #define __Pyx_GetBufferAndValidate(buf, obj, dtype, flags, nd, cast, stack)\ ((obj == Py_None || obj == NULL) ?\ (__Pyx_ZeroBuffer(buf), 0) :\ __Pyx__GetBufferAndValidate(buf, obj, dtype, flags, nd, cast, stack)) static int __Pyx__GetBufferAndValidate(Py_buffer* buf, PyObject* obj, const __Pyx_TypeInfo* dtype, int flags, int nd, int cast, __Pyx_BufFmt_StackElem* stack); static void __Pyx_ZeroBuffer(Py_buffer* buf); static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info); static Py_ssize_t __Pyx_minusones[] = { -1, -1, -1, -1, -1, -1, -1, -1 }; static Py_ssize_t __Pyx_zeros[] = { 0, 0, 0, 0, 0, 0, 0, 0 }; /* BufferIndexError.proto */ static void __Pyx_RaiseBufferIndexError(int axis); #define __Pyx_BufPtrStrided2d(type, buf, i0, s0, i1, s1) (type)((char*)buf + i0 * s0 + i1 * s1) #define __Pyx_BufPtrStrided1d(type, buf, i0, s0) (type)((char*)buf + i0 * s0) /* PyLongBinop.proto */ #if !CYTHON_COMPILING_IN_PYPY static CYTHON_INLINE PyObject* __Pyx_PyLong_MultiplyCObj(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check); #else #define __Pyx_PyLong_MultiplyCObj(op1, op2, intval, inplace, zerodivision_check)\ (inplace ? PyNumber_InPlaceMultiply(op1, op2) : PyNumber_Multiply(op1, op2)) #endif /* PySequenceMultiply.proto */ #define __Pyx_PySequence_Multiply_Left(mul, seq) __Pyx_PySequence_Multiply(seq, mul) #if !CYTHON_USE_TYPE_SLOTS #define __Pyx_PySequence_Multiply PySequence_Repeat #else static CYTHON_INLINE PyObject* __Pyx_PySequence_Multiply(PyObject *seq, Py_ssize_t mul); #endif /* BufferFallbackError.proto */ static void __Pyx_RaiseBufferFallbackError(void); /* CIntToPyUnicode.proto */ #define __Pyx_PyUnicode_From_int(value, width, padding_char, format_char) (\ ((format_char) == ('c')) ?\ __Pyx_uchar___Pyx_PyUnicode_From_int(value, width, padding_char) :\ __Pyx____Pyx_PyUnicode_From_int(value, width, padding_char, format_char)\ ) static CYTHON_INLINE PyObject* __Pyx_uchar___Pyx_PyUnicode_From_int(int value, Py_ssize_t width, char padding_char); static CYTHON_INLINE PyObject* __Pyx____Pyx_PyUnicode_From_int(int value, Py_ssize_t width, char padding_char, char format_char); /* GetAttr3.proto */ static CYTHON_INLINE PyObject *__Pyx_GetAttr3(PyObject *, PyObject *, PyObject *); /* ModInt[Py_ssize_t].proto */ static CYTHON_INLINE Py_ssize_t __Pyx_mod_Py_ssize_t(Py_ssize_t, Py_ssize_t, int b_is_constant); /* PyRange_Check.proto */ #if CYTHON_COMPILING_IN_PYPY && !defined(PyRange_Check) #define PyRange_Check(obj) __Pyx_TypeCheck((obj), &PyRange_Type) #endif /* DivInt[Py_ssize_t].proto */ static CYTHON_INLINE Py_ssize_t __Pyx_div_Py_ssize_t(Py_ssize_t, Py_ssize_t, int b_is_constant); /* SetStringIndexingError.proto (used by GetItemIntUnicode) */ static void __Pyx_SetStringIndexingError(const char* message, int has_gil); /* GetItemIntUnicode.proto */ #define __Pyx_GetItemInt_Unicode(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck, has_gil, unsafe_shared)\ (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ __Pyx_GetItemInt_Unicode_Fast(o, (Py_ssize_t)i, wraparound, boundscheck, has_gil) :\ (__Pyx_SetStringIndexingError("string index out of range", has_gil), (Py_UCS4)-1)) static CYTHON_INLINE Py_UCS4 __Pyx_GetItemInt_Unicode_Fast(PyObject* ustring, Py_ssize_t i, int wraparound, int boundscheck, int has_gil); /* PyUnicode_Substring.proto */ static CYTHON_INLINE PyObject* __Pyx_PyUnicode_Substring( PyObject* text, Py_ssize_t start, Py_ssize_t stop); /* FloatExceptionCheck.proto */ #define __PYX_CHECK_FLOAT_EXCEPTION(value, error_value)\ ((error_value) == (error_value) ?\ (value) == (error_value) :\ (value) != (value)) /* PyLongCompare.proto */ static CYTHON_INLINE int __Pyx_PyLong_BoolNeObjC(PyObject *op1, PyObject *op2, long intval, long inplace); /* GetItemIntBytes.proto */ #define __Pyx_GetItemInt_Bytes(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck, has_gil, unsafe_shared)\ (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ __Pyx_GetItemInt_Bytes_Fast(o, (Py_ssize_t)i, wraparound, boundscheck, has_gil) :\ (__Pyx_SetStringIndexingError("string index out of range", has_gil), -1)) static CYTHON_INLINE int __Pyx_GetItemInt_Bytes_Fast(PyObject* bytes, Py_ssize_t index, int wraparound, int boundscheck, int has_gil); /* AllocateExtensionType.proto */ static PyObject *__Pyx_AllocateExtensionType(PyTypeObject *t, int is_final); /* CallNextTpTraverse.proto */ static int __Pyx_call_next_tp_traverse(PyObject* obj, visitproc v, void *a, traverseproc current_tp_traverse); /* CallNextTpClear.proto */ static void __Pyx_call_next_tp_clear(PyObject* obj, inquiry current_tp_clear); /* CheckTypeForFreelists.proto */ #if CYTHON_USE_FREELISTS #if CYTHON_USE_TYPE_SPECS #define __PYX_CHECK_FINAL_TYPE_FOR_FREELISTS(t, expected_tp, expected_size) ((int) ((t) == (expected_tp))) #define __PYX_CHECK_TYPE_FOR_FREELIST_FLAGS Py_TPFLAGS_IS_ABSTRACT #else #define __PYX_CHECK_FINAL_TYPE_FOR_FREELISTS(t, expected_tp, expected_size) ((int) ((t)->tp_basicsize == (expected_size))) #define __PYX_CHECK_TYPE_FOR_FREELIST_FLAGS (Py_TPFLAGS_IS_ABSTRACT | Py_TPFLAGS_HEAPTYPE) #endif #define __PYX_CHECK_TYPE_FOR_FREELISTS(t, expected_tp, expected_size)\ (__PYX_CHECK_FINAL_TYPE_FOR_FREELISTS((t), (expected_tp), (expected_size)) &\ (int) (!__Pyx_PyType_HasFeature((t), __PYX_CHECK_TYPE_FOR_FREELIST_FLAGS))) #endif /* ValidateBasesTuple.proto (used by PyType_Ready) */ #if CYTHON_COMPILING_IN_CPYTHON || CYTHON_COMPILING_IN_LIMITED_API || CYTHON_USE_TYPE_SPECS static int __Pyx_validate_bases_tuple(const char *type_name, Py_ssize_t dictoffset, PyObject *bases); #endif /* PyType_Ready.proto */ CYTHON_UNUSED static int __Pyx_PyType_Ready(PyTypeObject *t); /* SetVTable.proto */ static int __Pyx_SetVtable(PyTypeObject* typeptr , void* vtable); /* GetVTable.proto (used by MergeVTables) */ static void* __Pyx_GetVtable(PyTypeObject *type); /* MergeVTables.proto */ static int __Pyx_MergeVtables(PyTypeObject *type); /* DelItemOnTypeDict.proto (used by SetupReduce) */ static int __Pyx__DelItemOnTypeDict(PyTypeObject *tp, PyObject *k); #define __Pyx_DelItemOnTypeDict(tp, k) __Pyx__DelItemOnTypeDict((PyTypeObject*)tp, k) /* SetupReduce.proto */ static int __Pyx_setup_reduce(PyObject* type_obj); /* TypeImport.proto */ #ifndef __PYX_HAVE_RT_ImportType_proto_3_2_4 #define __PYX_HAVE_RT_ImportType_proto_3_2_4 #if defined (__STDC_VERSION__) && __STDC_VERSION__ >= 201112L #include #endif #if (defined (__STDC_VERSION__) && __STDC_VERSION__ >= 201112L) || __cplusplus >= 201103L #define __PYX_GET_STRUCT_ALIGNMENT_3_2_4(s) alignof(s) #else #define __PYX_GET_STRUCT_ALIGNMENT_3_2_4(s) sizeof(void*) #endif enum __Pyx_ImportType_CheckSize_3_2_4 { __Pyx_ImportType_CheckSize_Error_3_2_4 = 0, __Pyx_ImportType_CheckSize_Warn_3_2_4 = 1, __Pyx_ImportType_CheckSize_Ignore_3_2_4 = 2 }; static PyTypeObject *__Pyx_ImportType_3_2_4(PyObject* module, const char *module_name, const char *class_name, size_t size, size_t alignment, enum __Pyx_ImportType_CheckSize_3_2_4 check_size); #endif /* ClassMethod.proto */ #if !CYTHON_COMPILING_IN_LIMITED_API #include "descrobject.h" #endif CYTHON_UNUSED static PyObject* __Pyx_Method_ClassMethod(PyObject *method); /* GetNameInClass.proto */ #define __Pyx_GetNameInClass(var, nmspace, name) (var) = __Pyx__GetNameInClass(nmspace, name) static PyObject *__Pyx__GetNameInClass(PyObject *nmspace, PyObject *name); /* ListPack.proto */ static PyObject *__Pyx_PyList_Pack(Py_ssize_t n, ...); /* CLineInTraceback.proto (used by AddTraceback) */ #if CYTHON_CLINE_IN_TRACEBACK && CYTHON_CLINE_IN_TRACEBACK_RUNTIME static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line); #else #define __Pyx_CLineForTraceback(tstate, c_line) (((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0) #endif /* CodeObjectCache.proto (used by AddTraceback) */ #if CYTHON_COMPILING_IN_LIMITED_API typedef PyObject __Pyx_CachedCodeObjectType; #else typedef PyCodeObject __Pyx_CachedCodeObjectType; #endif typedef struct { __Pyx_CachedCodeObjectType* code_object; int code_line; } __Pyx_CodeObjectCacheEntry; struct __Pyx_CodeObjectCache { int count; int max_count; __Pyx_CodeObjectCacheEntry* entries; #if CYTHON_COMPILING_IN_CPYTHON_FREETHREADING __pyx_atomic_int_type accessor_count; #endif }; static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line); static __Pyx_CachedCodeObjectType *__pyx_find_code_object(int code_line); static void __pyx_insert_code_object(int code_line, __Pyx_CachedCodeObjectType* code_object); /* AddTraceback.proto */ static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename); /* CheckUnpickleChecksum.proto */ static CYTHON_INLINE int __Pyx_CheckUnpickleChecksum(long checksum, long checksum1, long checksum2, long checksum3, const char *members); /* BufferStructDeclare.proto */ typedef struct { Py_ssize_t shape, strides, suboffsets; } __Pyx_Buf_DimInfo; typedef struct { size_t refcount; Py_buffer pybuffer; } __Pyx_Buffer; typedef struct { __Pyx_Buffer *rcbuffer; char *data; __Pyx_Buf_DimInfo diminfo[8]; } __Pyx_LocalBuf_ND; /* RealImag.proto */ #if CYTHON_CCOMPLEX #ifdef __cplusplus #define __Pyx_CREAL(z) ((z).real()) #define __Pyx_CIMAG(z) ((z).imag()) #else #define __Pyx_CREAL(z) (__real__(z)) #define __Pyx_CIMAG(z) (__imag__(z)) #endif #else #define __Pyx_CREAL(z) ((z).real) #define __Pyx_CIMAG(z) ((z).imag) #endif #if defined(__cplusplus) && CYTHON_CCOMPLEX\ && (defined(_WIN32) || defined(__clang__) || (defined(__GNUC__) && (__GNUC__ >= 5 || __GNUC__ == 4 && __GNUC_MINOR__ >= 4 )) || __cplusplus >= 201103) #define __Pyx_SET_CREAL(z,x) ((z).real(x)) #define __Pyx_SET_CIMAG(z,y) ((z).imag(y)) #else #define __Pyx_SET_CREAL(z,x) __Pyx_CREAL(z) = (x) #define __Pyx_SET_CIMAG(z,y) __Pyx_CIMAG(z) = (y) #endif /* Arithmetic.proto */ #if CYTHON_CCOMPLEX && (1) && (!0 || __cplusplus) #define __Pyx_c_eq_float(a, b) ((a)==(b)) #define __Pyx_c_sum_float(a, b) ((a)+(b)) #define __Pyx_c_diff_float(a, b) ((a)-(b)) #define __Pyx_c_prod_float(a, b) ((a)*(b)) #define __Pyx_c_quot_float(a, b) ((a)/(b)) #define __Pyx_c_neg_float(a) (-(a)) #ifdef __cplusplus #define __Pyx_c_is_zero_float(z) ((z)==(float)0) #define __Pyx_c_conj_float(z) (::std::conj(z)) #if 1 #define __Pyx_c_abs_float(z) (::std::abs(z)) #define __Pyx_c_pow_float(a, b) (::std::pow(a, b)) #endif #else #define __Pyx_c_is_zero_float(z) ((z)==0) #define __Pyx_c_conj_float(z) (conjf(z)) #if 1 #define __Pyx_c_abs_float(z) (cabsf(z)) #define __Pyx_c_pow_float(a, b) (cpowf(a, b)) #endif #endif #else static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex, __pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex); static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex); #if 1 static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex); static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex, __pyx_t_float_complex); #endif #endif /* Arithmetic.proto */ #if CYTHON_CCOMPLEX && (1) && (!0 || __cplusplus) #define __Pyx_c_eq_double(a, b) ((a)==(b)) #define __Pyx_c_sum_double(a, b) ((a)+(b)) #define __Pyx_c_diff_double(a, b) ((a)-(b)) #define __Pyx_c_prod_double(a, b) ((a)*(b)) #define __Pyx_c_quot_double(a, b) ((a)/(b)) #define __Pyx_c_neg_double(a) (-(a)) #ifdef __cplusplus #define __Pyx_c_is_zero_double(z) ((z)==(double)0) #define __Pyx_c_conj_double(z) (::std::conj(z)) #if 1 #define __Pyx_c_abs_double(z) (::std::abs(z)) #define __Pyx_c_pow_double(a, b) (::std::pow(a, b)) #endif #else #define __Pyx_c_is_zero_double(z) ((z)==0) #define __Pyx_c_conj_double(z) (conj(z)) #if 1 #define __Pyx_c_abs_double(z) (cabs(z)) #define __Pyx_c_pow_double(a, b) (cpow(a, b)) #endif #endif #else static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex, __pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex); static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex); #if 1 static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex); static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex, __pyx_t_double_complex); #endif #endif /* Arithmetic.proto */ #if CYTHON_CCOMPLEX && (1) && (!0 || __cplusplus) #define __Pyx_c_eq_long__double(a, b) ((a)==(b)) #define __Pyx_c_sum_long__double(a, b) ((a)+(b)) #define __Pyx_c_diff_long__double(a, b) ((a)-(b)) #define __Pyx_c_prod_long__double(a, b) ((a)*(b)) #define __Pyx_c_quot_long__double(a, b) ((a)/(b)) #define __Pyx_c_neg_long__double(a) (-(a)) #ifdef __cplusplus #define __Pyx_c_is_zero_long__double(z) ((z)==(long double)0) #define __Pyx_c_conj_long__double(z) (::std::conj(z)) #if 1 #define __Pyx_c_abs_long__double(z) (::std::abs(z)) #define __Pyx_c_pow_long__double(a, b) (::std::pow(a, b)) #endif #else #define __Pyx_c_is_zero_long__double(z) ((z)==0) #define __Pyx_c_conj_long__double(z) (conjl(z)) #if 1 #define __Pyx_c_abs_long__double(z) (cabsl(z)) #define __Pyx_c_pow_long__double(a, b) (cpowl(a, b)) #endif #endif #else static CYTHON_INLINE int __Pyx_c_eq_long__double(__pyx_t_long_double_complex, __pyx_t_long_double_complex); static CYTHON_INLINE __pyx_t_long_double_complex __Pyx_c_sum_long__double(__pyx_t_long_double_complex, __pyx_t_long_double_complex); static CYTHON_INLINE __pyx_t_long_double_complex __Pyx_c_diff_long__double(__pyx_t_long_double_complex, __pyx_t_long_double_complex); static CYTHON_INLINE __pyx_t_long_double_complex __Pyx_c_prod_long__double(__pyx_t_long_double_complex, __pyx_t_long_double_complex); static CYTHON_INLINE __pyx_t_long_double_complex __Pyx_c_quot_long__double(__pyx_t_long_double_complex, __pyx_t_long_double_complex); static CYTHON_INLINE __pyx_t_long_double_complex __Pyx_c_neg_long__double(__pyx_t_long_double_complex); static CYTHON_INLINE int __Pyx_c_is_zero_long__double(__pyx_t_long_double_complex); static CYTHON_INLINE __pyx_t_long_double_complex __Pyx_c_conj_long__double(__pyx_t_long_double_complex); #if 1 static CYTHON_INLINE long double __Pyx_c_abs_long__double(__pyx_t_long_double_complex); static CYTHON_INLINE __pyx_t_long_double_complex __Pyx_c_pow_long__double(__pyx_t_long_double_complex, __pyx_t_long_double_complex); #endif #endif /* CIntToPy.proto */ static CYTHON_INLINE PyObject* __Pyx_PyLong_From_int(int value); /* CIntFromPy.proto */ static CYTHON_INLINE int __Pyx_PyLong_As_int(PyObject *); /* CIntFromPy.proto */ static CYTHON_INLINE long __Pyx_PyLong_As_long(PyObject *); /* CIntToPy.proto */ static CYTHON_INLINE PyObject* __Pyx_PyLong_From_long(long value); /* CIntFromPy.proto */ static CYTHON_INLINE npy_intp __Pyx_PyLong_As_npy_intp(PyObject *); /* CIntFromPy.proto */ static CYTHON_INLINE npy_uint8 __Pyx_PyLong_As_npy_uint8(PyObject *); /* CIntToPy.proto */ static CYTHON_INLINE PyObject* __Pyx_PyLong_From_npy_intp(npy_intp value); /* UpdateUnpickledDict.proto */ static int __Pyx_UpdateUnpickledDict(PyObject *obj, PyObject *state, Py_ssize_t index); /* FormatTypeName.proto */ #if CYTHON_COMPILING_IN_LIMITED_API typedef PyObject *__Pyx_TypeName; #define __Pyx_FMT_TYPENAME "%U" #define __Pyx_DECREF_TypeName(obj) Py_XDECREF(obj) #if __PYX_LIMITED_VERSION_HEX >= 0x030d0000 #define __Pyx_PyType_GetFullyQualifiedName PyType_GetFullyQualifiedName #else static __Pyx_TypeName __Pyx_PyType_GetFullyQualifiedName(PyTypeObject* tp); #endif #else // !LIMITED_API typedef const char *__Pyx_TypeName; #define __Pyx_FMT_TYPENAME "%.200s" #define __Pyx_PyType_GetFullyQualifiedName(tp) ((tp)->tp_name) #define __Pyx_DECREF_TypeName(obj) #endif /* FastTypeChecks.proto */ #if CYTHON_COMPILING_IN_CPYTHON #define __Pyx_TypeCheck(obj, type) __Pyx_IsSubtype(Py_TYPE(obj), (PyTypeObject *)type) #define __Pyx_TypeCheck2(obj, type1, type2) __Pyx_IsAnySubtype2(Py_TYPE(obj), (PyTypeObject *)type1, (PyTypeObject *)type2) static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b); static CYTHON_INLINE int __Pyx_IsAnySubtype2(PyTypeObject *cls, PyTypeObject *a, PyTypeObject *b); static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject *type); static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *type1, PyObject *type2); #else #define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type) #define __Pyx_TypeCheck2(obj, type1, type2) (PyObject_TypeCheck(obj, (PyTypeObject *)type1) || PyObject_TypeCheck(obj, (PyTypeObject *)type2)) #define __Pyx_PyErr_GivenExceptionMatches(err, type) PyErr_GivenExceptionMatches(err, type) static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *type1, PyObject *type2) { return PyErr_GivenExceptionMatches(err, type1) || PyErr_GivenExceptionMatches(err, type2); } #endif #define __Pyx_PyErr_ExceptionMatches2(err1, err2) __Pyx_PyErr_GivenExceptionMatches2(__Pyx_PyErr_CurrentExceptionType(), err1, err2) #define __Pyx_PyException_Check(obj) __Pyx_TypeCheck(obj, PyExc_Exception) #ifdef PyExceptionInstance_Check #define __Pyx_PyBaseException_Check(obj) PyExceptionInstance_Check(obj) #else #define __Pyx_PyBaseException_Check(obj) __Pyx_TypeCheck(obj, PyExc_BaseException) #endif /* GetRuntimeVersion.proto */ #if __PYX_LIMITED_VERSION_HEX < 0x030b0000 static unsigned long __Pyx_cached_runtime_version = 0; static void __Pyx_init_runtime_version(void); #else #define __Pyx_init_runtime_version() #endif static unsigned long __Pyx_get_runtime_version(void); /* CheckBinaryVersion.proto */ static int __Pyx_check_binary_version(unsigned long ct_version, unsigned long rt_version, int allow_newer); /* DecompressString.proto */ static PyObject *__Pyx_DecompressString(const char *s, Py_ssize_t length, int algo); /* MultiPhaseInitModuleState.proto */ #if CYTHON_PEP489_MULTI_PHASE_INIT && CYTHON_USE_MODULE_STATE static PyObject *__Pyx_State_FindModule(void*); static int __Pyx_State_AddModule(PyObject* module, void*); static int __Pyx_State_RemoveModule(void*); #elif CYTHON_USE_MODULE_STATE #define __Pyx_State_FindModule PyState_FindModule #define __Pyx_State_AddModule PyState_AddModule #define __Pyx_State_RemoveModule PyState_RemoveModule #endif /* #### Code section: module_declarations ### */ /* CythonABIVersion.proto */ #if CYTHON_COMPILING_IN_LIMITED_API #if CYTHON_METH_FASTCALL #define __PYX_FASTCALL_ABI_SUFFIX "_fastcall" #else #define __PYX_FASTCALL_ABI_SUFFIX #endif #define __PYX_LIMITED_ABI_SUFFIX "limited" __PYX_FASTCALL_ABI_SUFFIX __PYX_AM_SEND_ABI_SUFFIX #else #define __PYX_LIMITED_ABI_SUFFIX #endif #if __PYX_HAS_PY_AM_SEND == 1 #define __PYX_AM_SEND_ABI_SUFFIX #elif __PYX_HAS_PY_AM_SEND == 2 #define __PYX_AM_SEND_ABI_SUFFIX "amsendbackport" #else #define __PYX_AM_SEND_ABI_SUFFIX "noamsend" #endif #ifndef __PYX_MONITORING_ABI_SUFFIX #define __PYX_MONITORING_ABI_SUFFIX #endif #if CYTHON_USE_TP_FINALIZE #define __PYX_TP_FINALIZE_ABI_SUFFIX #else #define __PYX_TP_FINALIZE_ABI_SUFFIX "nofinalize" #endif #if CYTHON_USE_FREELISTS || !defined(__Pyx_AsyncGen_USED) #define __PYX_FREELISTS_ABI_SUFFIX #else #define __PYX_FREELISTS_ABI_SUFFIX "nofreelists" #endif #define CYTHON_ABI __PYX_ABI_VERSION __PYX_LIMITED_ABI_SUFFIX __PYX_MONITORING_ABI_SUFFIX __PYX_TP_FINALIZE_ABI_SUFFIX __PYX_FREELISTS_ABI_SUFFIX __PYX_AM_SEND_ABI_SUFFIX #define __PYX_ABI_MODULE_NAME "_cython_" CYTHON_ABI #define __PYX_TYPE_MODULE_PREFIX __PYX_ABI_MODULE_NAME "." static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_8itemsize_itemsize(PyArray_Descr *__pyx_v_self); /* proto*/ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_9alignment_alignment(PyArray_Descr *__pyx_v_self); /* proto*/ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_6fields_fields(PyArray_Descr *__pyx_v_self); /* proto*/ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_5names_names(PyArray_Descr *__pyx_v_self); /* proto*/ static CYTHON_INLINE PyArray_ArrayDescr *__pyx_f_5numpy_5dtype_8subarray_subarray(PyArray_Descr *__pyx_v_self); /* proto*/ static CYTHON_INLINE npy_uint64 __pyx_f_5numpy_5dtype_5flags_flags(PyArray_Descr *__pyx_v_self); /* proto*/ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_7numiter_numiter(PyArrayMultiIterObject *__pyx_v_self); /* proto*/ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_4size_size(PyArrayMultiIterObject *__pyx_v_self); /* proto*/ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_5index_index(PyArrayMultiIterObject *__pyx_v_self); /* proto*/ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_2nd_nd(PyArrayMultiIterObject *__pyx_v_self); /* proto*/ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_9broadcast_10dimensions_dimensions(PyArrayMultiIterObject *__pyx_v_self); /* proto*/ static CYTHON_INLINE void **__pyx_f_5numpy_9broadcast_5iters_iters(PyArrayMultiIterObject *__pyx_v_self); /* proto*/ static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject *__pyx_v_self); /* proto*/ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArrayObject *__pyx_v_self); /* proto*/ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx_v_self); /* proto*/ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObject *__pyx_v_self); /* proto*/ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayObject *__pyx_v_self); /* proto*/ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *__pyx_v_self); /* proto*/ static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__pyx_v_self); /* proto*/ static PyObject *__pyx_f_5HTSeq_6_HTSeq_15GenomicInterval_is_contained_in(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self, struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_iv, int __pyx_skip_dispatch); /* proto*/ static PyObject *__pyx_f_5HTSeq_6_HTSeq_15GenomicInterval_contains(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self, struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_iv, int __pyx_skip_dispatch); /* proto*/ static PyObject *__pyx_f_5HTSeq_6_HTSeq_15GenomicInterval_overlaps(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self, struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_iv, int __pyx_skip_dispatch); /* proto*/ static PyObject *__pyx_f_5HTSeq_6_HTSeq_15GenomicInterval_extend_to_include(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self, struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_iv, int __pyx_skip_dispatch); /* proto*/ static struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_f_5HTSeq_6_HTSeq_8Sequence_get_reverse_complement(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self, int __pyx_skip_dispatch, struct __pyx_opt_args_5HTSeq_6_HTSeq_8Sequence_get_reverse_complement *__pyx_optional_args); /* proto*/ static PyObject *__pyx_f_5HTSeq_6_HTSeq_8Sequence_add_bases_to_count_array(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self, PyArrayObject *__pyx_v_count_array_, int __pyx_skip_dispatch); /* proto*/ static struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_f_5HTSeq_6_HTSeq_8Sequence_trim_left_end(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self, struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_pattern, int __pyx_skip_dispatch, struct __pyx_opt_args_5HTSeq_6_HTSeq_8Sequence_trim_left_end *__pyx_optional_args); /* proto*/ static struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_f_5HTSeq_6_HTSeq_8Sequence_trim_right_end(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self, struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_pattern, int __pyx_skip_dispatch, struct __pyx_opt_args_5HTSeq_6_HTSeq_8Sequence_trim_right_end *__pyx_optional_args); /* proto*/ static PyObject *__pyx_f_5HTSeq_6_HTSeq_21SequenceWithQualities__fill_qual_arr(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_v_self); /* proto*/ struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_f_5HTSeq_6_HTSeq_21SequenceWithQualities_get_reverse_complement(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_v_self, int __pyx_skip_dispatch, struct __pyx_opt_args_5HTSeq_6_HTSeq_21SequenceWithQualities_get_reverse_complement *__pyx_optional_args); /* proto*/ struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_f_5HTSeq_6_HTSeq_21SequenceWithQualities_get_reverse_complement__pyx_wrap_1(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_v_self, int __pyx_skip_dispatch, struct __pyx_opt_args_5HTSeq_6_HTSeq_21SequenceWithQualities_get_reverse_complement *__pyx_optional_args); /* proto*/ static PyObject *__pyx_f_5HTSeq_6_HTSeq_21SequenceWithQualities_add_qual_to_count_array(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_v_self, PyArrayObject *__pyx_v_count_array_, int __pyx_skip_dispatch); /* proto*/ static struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_f_5HTSeq_6_HTSeq_21SequenceWithQualities_trim_left_end_with_quals(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_v_self, struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_pattern, int __pyx_skip_dispatch, struct __pyx_opt_args_5HTSeq_6_HTSeq_21SequenceWithQualities_trim_left_end_with_quals *__pyx_optional_args); /* proto*/ static struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_f_5HTSeq_6_HTSeq_21SequenceWithQualities_trim_right_end_with_quals(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_v_self, struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_pattern, int __pyx_skip_dispatch, struct __pyx_opt_args_5HTSeq_6_HTSeq_21SequenceWithQualities_trim_right_end_with_quals *__pyx_optional_args); /* proto*/ /* Module declarations from "libc.string" */ /* Module declarations from "libc.stdio" */ /* Module declarations from "__builtin__" */ /* Module declarations from "cpython.type" */ /* Module declarations from "cpython" */ /* Module declarations from "cpython.object" */ /* Module declarations from "cpython.ref" */ /* Module declarations from "numpy" */ /* Module declarations from "numpy" */ /* Module declarations from "HTSeq._HTSeq" */ static PyObject *__pyx_v_5HTSeq_6_HTSeq_strand_plus = 0; static PyObject *__pyx_v_5HTSeq_6_HTSeq_strand_minus = 0; static PyObject *__pyx_v_5HTSeq_6_HTSeq_strand_nostrand = 0; static PyObject *__pyx_v_5HTSeq_6_HTSeq__translation_table_for_complementation = 0; static PyObject *__pyx_8genexpr1__pyx_v_5HTSeq_6_HTSeq_i; static PyObject *__pyx_8genexpr1__pyx_v_5HTSeq_6_HTSeq_x; static PyObject *__pyx_f_5HTSeq_6_HTSeq_reverse_complement(PyObject *, int __pyx_skip_dispatch); /*proto*/ static PyObject *__pyx_f_5HTSeq_6_HTSeq_parse_cigar(PyObject *, int __pyx_skip_dispatch, struct __pyx_opt_args_5HTSeq_6_HTSeq_parse_cigar *__pyx_optional_args); /*proto*/ static PyObject *__pyx_f_5HTSeq_6_HTSeq_build_cigar_list(PyObject *, int __pyx_skip_dispatch, struct __pyx_opt_args_5HTSeq_6_HTSeq_build_cigar_list *__pyx_optional_args); /*proto*/ static PyObject *__pyx_f_5HTSeq_6_HTSeq__parse_SAM_optional_field_value(PyObject *); /*proto*/ static PyObject *__pyx_f_5HTSeq_6_HTSeq_quotesafe_split(PyObject *, int __pyx_skip_dispatch, struct __pyx_opt_args_5HTSeq_6_HTSeq_quotesafe_split *__pyx_optional_args); /*proto*/ static PyObject *__pyx_f_5HTSeq_6_HTSeq___pyx_unpickle_CigarOperation__set_state(struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *, PyObject *); /*proto*/ static PyObject *__pyx_f_5HTSeq_6_HTSeq___pyx_unpickle_Alignment__set_state(struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *, PyObject *); /*proto*/ static PyObject *__pyx_f_5HTSeq_6_HTSeq___pyx_unpickle_AlignmentWithSequenceReversal__set_state(struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *, PyObject *); /*proto*/ static PyObject *__pyx_f_5HTSeq_6_HTSeq___pyx_unpickle_BowtieAlignment__set_state(struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment *, PyObject *); /*proto*/ static PyObject *__pyx_f_5HTSeq_6_HTSeq___pyx_unpickle_SAM_Alignment__set_state(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *, PyObject *); /*proto*/ /* #### Code section: typeinfo ### */ static const __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_5numpy_int64_t = { "int64_t", NULL, sizeof(__pyx_t_5numpy_int64_t), { 0 }, 0, __PYX_IS_UNSIGNED(__pyx_t_5numpy_int64_t) ? 'U' : 'I', __PYX_IS_UNSIGNED(__pyx_t_5numpy_int64_t), 0 }; static const __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_5numpy_uint8_t = { "uint8_t", NULL, sizeof(__pyx_t_5numpy_uint8_t), { 0 }, 0, __PYX_IS_UNSIGNED(__pyx_t_5numpy_uint8_t) ? 'U' : 'I', __PYX_IS_UNSIGNED(__pyx_t_5numpy_uint8_t), 0 }; /* #### Code section: before_global_var ### */ #define __Pyx_MODULE_NAME "HTSeq._HTSeq" extern int __pyx_module_is_main_HTSeq___HTSeq; int __pyx_module_is_main_HTSeq___HTSeq = 0; /* Implementation of "HTSeq._HTSeq" */ /* #### Code section: global_var ### */ static PyObject *__pyx_builtin_open; static PyObject *__pyx_builtin_enumerate; /* #### Code section: string_decls ### */ static const char __pyx_k_read_iv[] = "_read, iv"; static const char __pyx_k_flag__read__read_as_sequenced_a[] = "_flag, _read, _read_as_sequenced, aQual, cigar, failed_platform_qc, inferred_insert_size, iv, mate_start, not_primary_alignment, optional_fields, original_sam_line, pcr_or_optical_duplicate, pe_which, proper_pair, read_as_aligned, supplementary"; static const char __pyx_k_query_from_query_to_ref_iv_size[] = "query_from, query_to, ref_iv, size, type"; static const char __pyx_k_read__read_as_sequenced_iv_read[] = "_read, _read_as_sequenced, iv, read_as_aligned"; static const char __pyx_k_read__read_as_sequenced_iv_read_2[] = "_read, _read_as_sequenced, iv, read_as_aligned, reserved, substitutions"; /* #### Code section: decls ### */ static int __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval___init__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self, PyObject *__pyx_v_chrom, long __pyx_v_start, long __pyx_v_end, PyObject *__pyx_v_strand); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_6strand___set__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self, PyObject *__pyx_v_strand); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_6strand_2__get__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_2__reduce__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_4__copy__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_6__repr__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_8__str__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_6length___get__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_6length_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self, long __pyx_v_newLength); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_7start_d___get__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_7start_d_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self, long __pyx_v_newStartd); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_5end_d___get__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_12start_as_pos___get__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_10end_as_pos___get__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_14start_d_as_pos___get__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_12end_d_as_pos___get__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_10__richcmp__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self, struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_other, int __pyx_v_op); /* proto */ static Py_hash_t __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_12__hash__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_14is_contained_in(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self, struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_iv); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_16contains(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self, struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_iv); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_18overlaps(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self, struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_iv); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_20range(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self, long __pyx_v_step); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_22range_d(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self, long __pyx_v_step); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_24extend_to_include(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self, struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_iv); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_26copy(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_5chrom___get__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_5chrom_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_5chrom_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_5start___get__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_5start_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_3end___get__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_3end_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_GenomicInterval_from_directional(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_chrom, long __pyx_v_start_d, long __pyx_v_length, PyObject *__pyx_v_strand); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_15GenomicPosition___init__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition *__pyx_v_self, PyObject *__pyx_v_chrom, long __pyx_v_pos, PyObject *__pyx_v_strand); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicPosition_3pos___get__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_15GenomicPosition_3pos_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition *__pyx_v_self, long __pyx_v_newValue); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicPosition_3end___get__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicPosition_6length___get__(CYTHON_UNUSED struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicPosition_2__repr__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicPosition_4__str__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicPosition_6__reduce__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15GenomicPosition_8copy(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_create(PyTypeObject *__pyx_v_cls, struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_iv, PyObject *__pyx_v_typecode, PyObject *__pyx_v_storage, PyObject *__pyx_v_memmap_dir); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_2_create_view(PyTypeObject *__pyx_v_cls, struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_vec, struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_iv); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_4extend_to_include(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self, PyObject *__pyx_v_iv); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_6__getitem__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self, PyObject *__pyx_v_index); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_8__setitem__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self, PyObject *__pyx_v_index, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_8__iadd___addval(PyObject *__pyx_self, PyObject *__pyx_v_x); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_10__iadd__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_12__iter__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_14values(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_16steps(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_18apply(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self, PyObject *__pyx_v_fun); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_20__repr__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_22__reduce__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_5array___get__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_5array_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_5array_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_2iv___get__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_2iv_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_2iv_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_6offset___get__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_6offset_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_17is_vector_of_sets___get__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_17is_vector_of_sets_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_8_storage___get__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_8_storage_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_8_storage_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_8typecode___get__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_8typecode_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_8typecode_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_10memmap_dir___get__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_10memmap_dir_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_10memmap_dir_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_2_ChromVector_unpickle(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_array, PyObject *__pyx_v_iv, PyObject *__pyx_v_offset, PyObject *__pyx_v_is_vector_of_sets, PyObject *__pyx_v__storage); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_12GenomicArray___init__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *__pyx_v_self, PyObject *__pyx_v_chroms, int __pyx_v_stranded, PyObject *__pyx_v_typecode, PyObject *__pyx_v_storage, PyObject *__pyx_v_memmap_dir, PyObject *__pyx_v_header); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_2__getitem__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *__pyx_v_self, PyObject *__pyx_v_index); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_4__setitem__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *__pyx_v_self, PyObject *__pyx_v_index, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_6add_chrom(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *__pyx_v_self, PyObject *__pyx_v_chrom, PyObject *__pyx_v_length, PyObject *__pyx_v_start_index); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_8__reduce__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_10__contains__(CYTHON_UNUSED struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_iv); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_12write_bedgraph_file(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *__pyx_v_self, PyObject *__pyx_v_file_or_filename, PyObject *__pyx_v_strand, PyObject *__pyx_v_track_options, PyObject *__pyx_v_separator); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_14from_bedgraph_file(PyTypeObject *__pyx_v_cls, PyObject *__pyx_v_file_or_filename, PyObject *__pyx_v_strand, PyObject *__pyx_v_typecode); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_17write_bigwig_file_write_with_buffer(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_bw, PyObject *__pyx_v_entries, PyObject *__pyx_v_bufsize, PyObject *__pyx_v_newentry); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_16write_bigwig_file(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *__pyx_v_self, PyObject *__pyx_v_filename, PyObject *__pyx_v_strand); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_18from_bigwig_file(PyTypeObject *__pyx_v_cls, PyObject *__pyx_v_filename, PyObject *__pyx_v_strand, PyObject *__pyx_v_typecode); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_20steps(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_13chrom_vectors___get__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_13chrom_vectors_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_13chrom_vectors_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_8stranded___get__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_8typecode___get__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_15auto_add_chroms___get__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_15auto_add_chroms_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_15auto_add_chroms_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_7storage___get__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_10memmap_dir___get__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_6header___get__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_6header_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_6header_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_4_GenomicArray_unpickle(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_stranded, PyObject *__pyx_v_typecode, PyObject *__pyx_v_chrom_vectors); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_6_make_translation_table_for_complementation(CYTHON_UNUSED PyObject *__pyx_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_8reverse_complement(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_seq); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_8Sequence___init__(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self, PyObject *__pyx_v_seq, PyObject *__pyx_v_name); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_8Sequence_2get_reverse_complement(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self, int __pyx_v_rename); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_8Sequence_4__str__(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_8Sequence_6__repr__(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self); /* proto */ static Py_ssize_t __pyx_pf_5HTSeq_6_HTSeq_8Sequence_8__len__(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_8Sequence_10__getitem__(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self, PyObject *__pyx_v_item); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_8Sequence_12__getstate__(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_8Sequence_14__setstate__(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self, PyObject *__pyx_v_state); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_8Sequence_16__reduce__(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_8Sequence_18write_to_fasta_file(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self, PyObject *__pyx_v_fasta_file, PyObject *__pyx_v_characters_per_line); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_8Sequence_20add_bases_to_count_array(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self, PyArrayObject *__pyx_v_count_array_); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_8Sequence_22trim_left_end(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self, struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_pattern, float __pyx_v_mismatch_prop); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_8Sequence_24trim_right_end(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self, struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_pattern, float __pyx_v_mismatch_prop); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_8Sequence_3seq___get__(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_8Sequence_3seq_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_8Sequence_3seq_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_8Sequence_4name___get__(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_8Sequence_4name_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_8Sequence_4name_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_8Sequence_5descr___get__(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_8Sequence_5descr_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_8Sequence_5descr_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities___init__(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_v_self, PyObject *__pyx_v_seq, PyObject *__pyx_v_name, PyObject *__pyx_v_qualstr, PyObject *__pyx_v_qualscale); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_4qual___get__(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_4qual_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_v_self, PyObject *__pyx_v_newvalue); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_2__repr__(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_4__getitem__(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_v_self, PyObject *__pyx_v_item); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_7qualstr___get__(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_6write_to_fastq_file(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_v_self, PyObject *__pyx_v_fastq_file); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_8get_fastq_str(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_v_self, int __pyx_v_convert_to_phred); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_10get_reverse_complement(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_v_self, int __pyx_v_rename); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_12add_qual_to_count_array(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_v_self, PyArrayObject *__pyx_v_count_array_); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_14trim_left_end_with_quals(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_v_self, struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_pattern, int __pyx_v_max_mm_qual); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_16trim_right_end_with_quals(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_v_self, struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *__pyx_v_pattern, int __pyx_v_max_mm_qual); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_8_qualstr___get__(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_14_qualstr_phred___get__(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_10_qualscale___get__(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_8_qualarr___get__(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_14CigarOperation___init__(struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *__pyx_v_self, PyObject *__pyx_v_type_, int __pyx_v_size, int __pyx_v_rfrom, int __pyx_v_rto, int __pyx_v_qfrom, int __pyx_v_qto, PyObject *__pyx_v_chrom, PyObject *__pyx_v_strand, int __pyx_v_check); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_2__repr__(struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_4check(struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_4type___get__(struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_4type_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_4type_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_4size___get__(struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_4size_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_6ref_iv___get__(struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_6ref_iv_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_6ref_iv_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_10query_from___get__(struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_10query_from_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_8query_to___get__(struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_8query_to_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_6__reduce_cython__(struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_8__setstate_cython__(struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_10parse_cigar(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_cigar_string, int __pyx_v_ref_left, PyObject *__pyx_v_chrom, PyObject *__pyx_v_strand); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_12build_cigar_list(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_cigar_pairs, int __pyx_v_ref_left, PyObject *__pyx_v_chrom, PyObject *__pyx_v_strand); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_9Alignment___init__(struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *__pyx_v_self, PyObject *__pyx_v_read, PyObject *__pyx_v_iv); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_9Alignment_4read___get__(struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_9Alignment_2__repr__(struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_9Alignment_10paired_end___get__(CYTHON_UNUSED struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_9Alignment_7aligned___get__(struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_9Alignment_5_read___get__(struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_9Alignment_5_read_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_9Alignment_5_read_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_9Alignment_2iv___get__(struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_9Alignment_2iv_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_9Alignment_2iv_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_9Alignment_4__reduce_cython__(struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_9Alignment_6__setstate_cython__(struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal___init__(struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *__pyx_v_self, struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *__pyx_v_read_as_aligned, struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *__pyx_v_iv); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_4read___get__(struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_15read_as_aligned___get__(struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_15read_as_aligned_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_15read_as_aligned_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_18_read_as_sequenced___get__(struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_18_read_as_sequenced_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_18_read_as_sequenced_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_2__reduce_cython__(struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_4__setstate_cython__(struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_15BowtieAlignment___init__(struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment *__pyx_v_self, PyObject *__pyx_v_bowtie_line); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15BowtieAlignment_8reserved___get__(struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_15BowtieAlignment_8reserved_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_15BowtieAlignment_8reserved_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15BowtieAlignment_13substitutions___get__(struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_15BowtieAlignment_13substitutions_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_15BowtieAlignment_13substitutions_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15BowtieAlignment_2__reduce_cython__(struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_15BowtieAlignment_4__setstate_cython__(struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_to_pysam_AlignedSegment(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self, PyObject *__pyx_v_sf); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_2to_pysam_AlignedRead(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self, PyObject *__pyx_v_sf); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_4from_pysam_AlignedRead(CYTHON_UNUSED PyTypeObject *__pyx_v_cls, PyObject *__pyx_v_read, PyObject *__pyx_v_samfile); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_6from_pysam_AlignedSegment(CYTHON_UNUSED PyTypeObject *__pyx_v_cls, PyObject *__pyx_v_read, PyObject *__pyx_v_samfile); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_8from_SAM_line(CYTHON_UNUSED PyTypeObject *__pyx_v_cls, PyObject *__pyx_v_line); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_4flag___get__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_4flag_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_10paired_end___get__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_12mate_aligned___get__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_10get_sam_line(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_12has_optional_field(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self, PyObject *__pyx_v_tag); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_14optional_field(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self, PyObject *__pyx_v_tag); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_16raw_optional_fields(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_5cigar___get__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_5cigar_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_5cigar_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_5aQual___get__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_5aQual_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_10mate_start___get__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_10mate_start_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_10mate_start_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_8pe_which___get__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_8pe_which_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_8pe_which_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_20inferred_insert_size___get__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_20inferred_insert_size_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_11proper_pair___get__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_11proper_pair_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_21not_primary_alignment___get__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_21not_primary_alignment_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_18failed_platform_qc___get__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_18failed_platform_qc_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_24pcr_or_optical_duplicate___get__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_24pcr_or_optical_duplicate_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_13supplementary___get__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_13supplementary_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_17original_sam_line___get__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_15optional_fields___get__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_15optional_fields_2__set__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_15optional_fields_4__del__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_18__reduce_cython__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_20__setstate_cython__(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_14quotesafe_split(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_s, PyObject *__pyx_v_split, PyObject *__pyx_v_quote); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_16__pyx_unpickle_CigarOperation(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_18__pyx_unpickle_Alignment(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_20__pyx_unpickle_AlignmentWithSequenceReversal(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_22__pyx_unpickle_BowtieAlignment(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ static PyObject *__pyx_pf_5HTSeq_6_HTSeq_24__pyx_unpickle_SAM_Alignment(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_GenomicInterval(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_GenomicPosition(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_Sequence(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_SequenceWithQualities(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_Alignment(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_SAM_Alignment(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_ChromVector(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_GenomicArray(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_CigarOperation(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_BowtieAlignment(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ /* #### Code section: late_includes ### */ /* #### Code section: module_state ### */ /* SmallCodeConfig */ #ifndef CYTHON_SMALL_CODE #if defined(__clang__) #define CYTHON_SMALL_CODE #elif defined(__GNUC__) && (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 3)) #define CYTHON_SMALL_CODE __attribute__((cold)) #else #define CYTHON_SMALL_CODE #endif #endif typedef struct { PyObject *__pyx_d; PyObject *__pyx_b; PyObject *__pyx_cython_runtime; PyObject *__pyx_empty_tuple; PyObject *__pyx_empty_bytes; PyObject *__pyx_empty_unicode; PyTypeObject *__pyx_ptype_7cpython_4type_type; PyTypeObject *__pyx_ptype_5numpy_dtype; PyTypeObject *__pyx_ptype_5numpy_flatiter; PyTypeObject *__pyx_ptype_5numpy_broadcast; PyTypeObject *__pyx_ptype_5numpy_ndarray; PyTypeObject *__pyx_ptype_5numpy_generic; PyTypeObject *__pyx_ptype_5numpy_number; PyTypeObject *__pyx_ptype_5numpy_integer; PyTypeObject *__pyx_ptype_5numpy_signedinteger; PyTypeObject *__pyx_ptype_5numpy_unsignedinteger; PyTypeObject *__pyx_ptype_5numpy_inexact; PyTypeObject *__pyx_ptype_5numpy_floating; PyTypeObject *__pyx_ptype_5numpy_complexfloating; PyTypeObject *__pyx_ptype_5numpy_flexible; PyTypeObject *__pyx_ptype_5numpy_character; PyTypeObject *__pyx_ptype_5numpy_ufunc; PyObject *__pyx_type_5HTSeq_6_HTSeq_GenomicInterval; PyObject *__pyx_type_5HTSeq_6_HTSeq_GenomicPosition; PyObject *__pyx_type_5HTSeq_6_HTSeq_Sequence; PyObject *__pyx_type_5HTSeq_6_HTSeq_SequenceWithQualities; PyObject *__pyx_type_5HTSeq_6_HTSeq_Alignment; PyObject *__pyx_type_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal; PyObject *__pyx_type_5HTSeq_6_HTSeq_SAM_Alignment; PyObject *__pyx_type_5HTSeq_6_HTSeq_ChromVector; PyObject *__pyx_type_5HTSeq_6_HTSeq_GenomicArray; PyObject *__pyx_type_5HTSeq_6_HTSeq_CigarOperation; PyObject *__pyx_type_5HTSeq_6_HTSeq_BowtieAlignment; PyObject *__pyx_type_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__; PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq_GenomicInterval; PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq_GenomicPosition; PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq_Sequence; PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq_SequenceWithQualities; PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq_Alignment; PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal; PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq_SAM_Alignment; PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq_ChromVector; PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq_GenomicArray; PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq_CigarOperation; PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq_BowtieAlignment; PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__; __Pyx_CachedCFunction __pyx_umethod_PyDict_Type_items; __Pyx_CachedCFunction __pyx_umethod_PyDict_Type_pop; __Pyx_CachedCFunction __pyx_umethod_PyDict_Type_values; __Pyx_CachedCFunction __pyx_umethod_PyUnicode_Type__upper; PyObject *__pyx_k_; PyObject *__pyx_k__16; PyObject *__pyx_slice[5]; PyObject *__pyx_tuple[17]; PyObject *__pyx_codeobj_tab[74]; PyObject *__pyx_string_tab[615]; PyObject *__pyx_number_tab[17]; /* #### Code section: module_state_contents ### */ /* CommonTypesMetaclass.module_state_decls */ PyTypeObject *__pyx_CommonTypesMetaclassType; /* CachedMethodType.module_state_decls */ #if CYTHON_COMPILING_IN_LIMITED_API PyObject *__Pyx_CachedMethodType; #endif /* CythonFunctionShared.module_state_decls */ PyTypeObject *__pyx_CyFunctionType; #if CYTHON_USE_FREELISTS struct __pyx_obj_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__ *__pyx_freelist_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__[8]; int __pyx_freecount_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__; #endif /* CodeObjectCache.module_state_decls */ struct __Pyx_CodeObjectCache __pyx_code_cache; /* #### Code section: module_state_end ### */ } __pyx_mstatetype; #if CYTHON_USE_MODULE_STATE #ifdef __cplusplus namespace { extern struct PyModuleDef __pyx_moduledef; } /* anonymous namespace */ #else static struct PyModuleDef __pyx_moduledef; #endif #define __pyx_mstate_global (__Pyx_PyModule_GetState(__Pyx_State_FindModule(&__pyx_moduledef))) #define __pyx_m (__Pyx_State_FindModule(&__pyx_moduledef)) #else static __pyx_mstatetype __pyx_mstate_global_static = #ifdef __cplusplus {}; #else {0}; #endif static __pyx_mstatetype * const __pyx_mstate_global = &__pyx_mstate_global_static; #endif /* #### Code section: constant_name_defines ### */ #define __pyx_kp_u_Automatic_adding_of_chromosomes __pyx_string_tab[0] #define __pyx_kp_u_Cannot_assign_to_zero_length_int __pyx_string_tab[1] #define __pyx_kp_u_Cannot_extend_an_interval_to_inc __pyx_string_tab[2] #define __pyx_kp_u_Cannot_extend_an_interval_to_inc_2 __pyx_string_tab[3] #define __pyx_kp_u_Cannot_extend_an_interval_to_inc_3 __pyx_string_tab[4] #define __pyx_kp_u_Cannot_subset_to_zero_length_int __pyx_string_tab[5] #define __pyx_kp_u_Chromosome_name_mismatch __pyx_string_tab[6] #define __pyx_kp_u_Illegal_CIGAR_string_s __pyx_string_tab[7] #define __pyx_kp_u_Illegal_base_letter_encountered __pyx_string_tab[8] #define __pyx_kp_u_Illegal_index_type __pyx_string_tab[9] #define __pyx_kp_u_Illegal_index_type_2 __pyx_string_tab[10] #define __pyx_kp_u_Illegal_quality_scale_s __pyx_string_tab[11] #define __pyx_kp_u_Illegal_storage_mode __pyx_string_tab[12] #define __pyx_kp_u_Inconsistent_CIGAR_operation __pyx_string_tab[13] #define __pyx_kp_u_Indefinite_length_chromosomes_ca __pyx_string_tab[14] #define __pyx_kp_u_MIDNSHP_X __pyx_string_tab[15] #define __pyx_kp_u_Malformatted_SAM_optional_field __pyx_string_tab[16] #define __pyx_kp_u_Malformed_SAM_line_MRNM_although __pyx_string_tab[17] #define __pyx_kp_u_Malformed_SAM_line_RNAME_althoug __pyx_string_tab[18] #define __pyx_kp_u_Non_stranded_index_used_for_stra __pyx_string_tab[19] #define __pyx_kp_u_None __pyx_string_tab[20] #define __pyx_kp_u_Note_that_Cython_is_deliberately __pyx_string_tab[21] #define __pyx_kp_u_Paired_end_read __pyx_string_tab[22] #define __pyx_kp_u_Please_Install_PySam_to_use_this __pyx_string_tab[23] #define __pyx_kp_u_Quality_string_has_not_the_same __pyx_string_tab[24] #define __pyx_kp_u_Quality_string_missing __pyx_string_tab[25] #define __pyx_kp_u_Quality_string_missing_2 __pyx_string_tab[26] #define __pyx_kp_u_Required_assignment_signature_no __pyx_string_tab[27] #define __pyx_kp_u_SAM_line_does_not_contain_at_lea __pyx_string_tab[28] #define __pyx_kp_u_SAM_optional_field_tag_s_not_fou __pyx_string_tab[29] #define __pyx_kp_u_SAM_optional_field_tag_s_not_uni __pyx_string_tab[30] #define __pyx_kp_u_SAM_optional_field_with_illegal __pyx_string_tab[31] #define __pyx_kp_u_Sequence_in_SAM_file_contains_wh __pyx_string_tab[32] #define __pyx_kp_u_Sequence_in_SAM_file_contains_wh_2 __pyx_string_tab[33] #define __pyx_kp_u_Start_of_interval_is_after_its_e __pyx_string_tab[34] #define __pyx_kp_u_Strand_mismatch __pyx_string_tab[35] #define __pyx_kp_u_Strand_must_be_or __pyx_string_tab[36] #define __pyx_kp_u_Strand_must_be_specified_for_str __pyx_string_tab[37] #define __pyx_kp_u_Strand_specified_in_unstranded_G __pyx_string_tab[38] #define __pyx_kp_u_The_new_interval_must_match_the __pyx_string_tab[39] #define __pyx_kp_u_Too_large_quality_value_encounte __pyx_string_tab[40] #define __pyx_kp_u_Typecode_not_supported __pyx_string_tab[41] #define __pyx_kp_u_Unknown_CIGAR_code_s_encountered __pyx_string_tab[42] #define __pyx_kp_u__10 __pyx_string_tab[43] #define __pyx_kp_u__11 __pyx_string_tab[44] #define __pyx_kp_u__12 __pyx_string_tab[45] #define __pyx_kp_u__14 __pyx_string_tab[46] #define __pyx_kp_u__15 __pyx_string_tab[47] #define __pyx_kp_u__17 __pyx_string_tab[48] #define __pyx_kp_u__18 __pyx_string_tab[49] #define __pyx_kp_u__19 __pyx_string_tab[50] #define __pyx_kp_u__2 __pyx_string_tab[51] #define __pyx_kp_u__20 __pyx_string_tab[52] #define __pyx_kp_u__21 __pyx_string_tab[53] #define __pyx_kp_u__22 __pyx_string_tab[54] #define __pyx_kp_u__23 __pyx_string_tab[55] #define __pyx_kp_u__24 __pyx_string_tab[56] #define __pyx_kp_u__25 __pyx_string_tab[57] #define __pyx_kp_u__26 __pyx_string_tab[58] #define __pyx_kp_u__27 __pyx_string_tab[59] #define __pyx_kp_u__28 __pyx_string_tab[60] #define __pyx_kp_u__29 __pyx_string_tab[61] #define __pyx_kp_u__3 __pyx_string_tab[62] #define __pyx_kp_u__30 __pyx_string_tab[63] #define __pyx_kp_u__31 __pyx_string_tab[64] #define __pyx_kp_u__34 __pyx_string_tab[65] #define __pyx_kp_u__4 __pyx_string_tab[66] #define __pyx_kp_u__5 __pyx_string_tab[67] #define __pyx_kp_u__6 __pyx_string_tab[68] #define __pyx_kp_u__7 __pyx_string_tab[69] #define __pyx_kp_u__8 __pyx_string_tab[70] #define __pyx_kp_u__9 __pyx_string_tab[71] #define __pyx_kp_u_add_note __pyx_string_tab[72] #define __pyx_kp_u_aligned_to __pyx_string_tab[73] #define __pyx_kp_u_assignment_to_qual_with_illegal __pyx_string_tab[74] #define __pyx_kp_u_auto_write __pyx_string_tab[75] #define __pyx_kp_u_base_s __pyx_string_tab[76] #define __pyx_kp_u_chroms_must_be_a_list_or_a_dict __pyx_string_tab[77] #define __pyx_kp_u_count_array_has_too_few_columns __pyx_string_tab[78] #define __pyx_kp_u_count_array_too_small_for_seque __pyx_string_tab[79] #define __pyx_kp_u_disable __pyx_string_tab[80] #define __pyx_kp_u_enable __pyx_string_tab[81] #define __pyx_kp_u_gc __pyx_string_tab[82] #define __pyx_kp_u_hard_clipped __pyx_string_tab[83] #define __pyx_kp_u_header_line_with_track_type_bedG __pyx_string_tab[84] #define __pyx_kp_u_isenabled __pyx_string_tab[85] #define __pyx_kp_u_length_2 __pyx_string_tab[86] #define __pyx_kp_u_nmm __pyx_string_tab[87] #define __pyx_kp_u_not_aligned __pyx_string_tab[88] #define __pyx_kp_u_numpy__core_multiarray_failed_to __pyx_string_tab[89] #define __pyx_kp_u_numpy__core_umath_failed_to_impo __pyx_string_tab[90] #define __pyx_kp_u_object __pyx_string_tab[91] #define __pyx_kp_u_object_2 __pyx_string_tab[92] #define __pyx_kp_u_object_3 __pyx_string_tab[93] #define __pyx_kp_u_on_ref_iv __pyx_string_tab[94] #define __pyx_kp_u_part __pyx_string_tab[95] #define __pyx_kp_u_pyBigWig_is_required_to_write_a __pyx_string_tab[96] #define __pyx_kp_u_qual_can_only_be_assigned_a_nump __pyx_string_tab[97] #define __pyx_kp_u_query_iv __pyx_string_tab[98] #define __pyx_kp_u_quote_must_be_length_1 __pyx_string_tab[99] #define __pyx_kp_u_s __pyx_string_tab[100] #define __pyx_kp_u_s_2 __pyx_string_tab[101] #define __pyx_kp_u_seq_and_qualstr_do_not_have_the __pyx_string_tab[102] #define __pyx_kp_u_sequence_matched __pyx_string_tab[103] #define __pyx_kp_u_sequence_mismatched __pyx_string_tab[104] #define __pyx_kp_u_soft_clipped __pyx_string_tab[105] #define __pyx_kp_u_solexa_old __pyx_string_tab[106] #define __pyx_kp_u_split_must_be_length_1 __pyx_string_tab[107] #define __pyx_kp_u_src_HTSeq__HTSeq_pyx __pyx_string_tab[108] #define __pyx_kp_u_start_is_larger_than_end __pyx_string_tab[109] #define __pyx_kp_u_start_too_small __pyx_string_tab[110] #define __pyx_kp_u_stop_too_large __pyx_string_tab[111] #define __pyx_kp_u_strand_2 __pyx_string_tab[112] #define __pyx_kp_u_strand_3 __pyx_string_tab[113] #define __pyx_kp_u_stringsource __pyx_string_tab[114] #define __pyx_kp_u_track_type_bedGraph __pyx_string_tab[115] #define __pyx_kp_u_track_type_bedGraph_2 __pyx_string_tab[116] #define __pyx_kp_u_track_type_bedGraph_s __pyx_string_tab[117] #define __pyx_kp_u_unmatched_quote __pyx_string_tab[118] #define __pyx_kp_u_w __pyx_string_tab[119] #define __pyx_n_u_A __pyx_string_tab[120] #define __pyx_n_u_AlignedRead __pyx_string_tab[121] #define __pyx_n_u_AlignedSegment __pyx_string_tab[122] #define __pyx_n_u_Alignment __pyx_string_tab[123] #define __pyx_n_u_AlignmentWithSequenceReversal __pyx_string_tab[124] #define __pyx_n_u_AlignmentWithSequenceReversal_2 __pyx_string_tab[125] #define __pyx_n_u_AlignmentWithSequenceReversal_3 __pyx_string_tab[126] #define __pyx_n_u_Alignment___reduce_cython __pyx_string_tab[127] #define __pyx_n_u_Alignment___setstate_cython __pyx_string_tab[128] #define __pyx_n_u_BigWig_Reader __pyx_string_tab[129] #define __pyx_n_u_BowtieAlignment __pyx_string_tab[130] #define __pyx_n_u_BowtieAlignment___reduce_cython __pyx_string_tab[131] #define __pyx_n_u_BowtieAlignment___setstate_cytho __pyx_string_tab[132] #define __pyx_n_u_C __pyx_string_tab[133] #define __pyx_n_u_ChromVector __pyx_string_tab[134] #define __pyx_n_u_ChromVector___reduce __pyx_string_tab[135] #define __pyx_n_u_ChromVector__create_view __pyx_string_tab[136] #define __pyx_n_u_ChromVector_apply __pyx_string_tab[137] #define __pyx_n_u_ChromVector_create __pyx_string_tab[138] #define __pyx_n_u_ChromVector_extend_to_include __pyx_string_tab[139] #define __pyx_n_u_ChromVector_steps __pyx_string_tab[140] #define __pyx_n_u_ChromVector_steps_2 __pyx_string_tab[141] #define __pyx_n_u_ChromVector_unpickle __pyx_string_tab[142] #define __pyx_n_u_ChromVector_values __pyx_string_tab[143] #define __pyx_n_u_CigarOperation __pyx_string_tab[144] #define __pyx_n_u_CigarOperation___reduce_cython __pyx_string_tab[145] #define __pyx_n_u_CigarOperation___setstate_cython __pyx_string_tab[146] #define __pyx_n_u_CigarOperation_check __pyx_string_tab[147] #define __pyx_n_u_D __pyx_string_tab[148] #define __pyx_n_u_G __pyx_string_tab[149] #define __pyx_n_u_GenomicArray __pyx_string_tab[150] #define __pyx_n_u_GenomicArray___reduce __pyx_string_tab[151] #define __pyx_n_u_GenomicArray_add_chrom __pyx_string_tab[152] #define __pyx_n_u_GenomicArray_from_bedgraph_file __pyx_string_tab[153] #define __pyx_n_u_GenomicArray_from_bigwig_file __pyx_string_tab[154] #define __pyx_n_u_GenomicArray_steps __pyx_string_tab[155] #define __pyx_n_u_GenomicArray_steps_2 __pyx_string_tab[156] #define __pyx_n_u_GenomicArray_unpickle __pyx_string_tab[157] #define __pyx_n_u_GenomicArray_write_bedgraph_file __pyx_string_tab[158] #define __pyx_n_u_GenomicArray_write_bigwig_file __pyx_string_tab[159] #define __pyx_n_u_GenomicInterval __pyx_string_tab[160] #define __pyx_n_u_GenomicInterval___copy __pyx_string_tab[161] #define __pyx_n_u_GenomicInterval___reduce __pyx_string_tab[162] #define __pyx_n_u_GenomicInterval_contains __pyx_string_tab[163] #define __pyx_n_u_GenomicInterval_copy __pyx_string_tab[164] #define __pyx_n_u_GenomicInterval_extend_to_includ __pyx_string_tab[165] #define __pyx_n_u_GenomicInterval_from_directional __pyx_string_tab[166] #define __pyx_n_u_GenomicInterval_is_contained_in __pyx_string_tab[167] #define __pyx_n_u_GenomicInterval_overlaps __pyx_string_tab[168] #define __pyx_n_u_GenomicInterval_range __pyx_string_tab[169] #define __pyx_n_u_GenomicInterval_range_2 __pyx_string_tab[170] #define __pyx_n_u_GenomicInterval_range_d __pyx_string_tab[171] #define __pyx_n_u_GenomicInterval_ranged __pyx_string_tab[172] #define __pyx_n_u_GenomicPosition __pyx_string_tab[173] #define __pyx_n_u_GenomicPosition___reduce __pyx_string_tab[174] #define __pyx_n_u_GenomicPosition_copy __pyx_string_tab[175] #define __pyx_n_u_H __pyx_string_tab[176] #define __pyx_n_u_HTSeq __pyx_string_tab[177] #define __pyx_n_u_HTSeq_StretchVector __pyx_string_tab[178] #define __pyx_n_u_HTSeq__HTSeq __pyx_string_tab[179] #define __pyx_n_u_HTSeq_internal __pyx_string_tab[180] #define __pyx_n_u_I __pyx_string_tab[181] #define __pyx_n_u_Inf __pyx_string_tab[182] #define __pyx_n_u_M __pyx_string_tab[183] #define __pyx_n_u_N __pyx_string_tab[184] #define __pyx_n_u_O __pyx_string_tab[185] #define __pyx_n_u_P __pyx_string_tab[186] #define __pyx_n_u_Pyx_PyDict_NextRef __pyx_string_tab[187] #define __pyx_n_u_Read __pyx_string_tab[188] #define __pyx_n_u_S __pyx_string_tab[189] #define __pyx_n_u_SAM_Alignment __pyx_string_tab[190] #define __pyx_n_u_SAM_Alignment___reduce_cython __pyx_string_tab[191] #define __pyx_n_u_SAM_Alignment___setstate_cython __pyx_string_tab[192] #define __pyx_n_u_SAM_Alignment_from_SAM_line __pyx_string_tab[193] #define __pyx_n_u_SAM_Alignment_from_pysam_Aligned __pyx_string_tab[194] #define __pyx_n_u_SAM_Alignment_from_pysam_Aligned_2 __pyx_string_tab[195] #define __pyx_n_u_SAM_Alignment_get_sam_line __pyx_string_tab[196] #define __pyx_n_u_SAM_Alignment_has_optional_field __pyx_string_tab[197] #define __pyx_n_u_SAM_Alignment_optional_field __pyx_string_tab[198] #define __pyx_n_u_SAM_Alignment_raw_optional_field __pyx_string_tab[199] #define __pyx_n_u_SAM_Alignment_to_pysam_AlignedRe __pyx_string_tab[200] #define __pyx_n_u_SAM_Alignment_to_pysam_AlignedSe __pyx_string_tab[201] #define __pyx_n_u_Sequence __pyx_string_tab[202] #define __pyx_n_u_SequenceWithQualities __pyx_string_tab[203] #define __pyx_n_u_SequenceWithQualities_add_qual_t __pyx_string_tab[204] #define __pyx_n_u_SequenceWithQualities_get_fastq __pyx_string_tab[205] #define __pyx_n_u_SequenceWithQualities_get_revers __pyx_string_tab[206] #define __pyx_n_u_SequenceWithQualities_trim_left __pyx_string_tab[207] #define __pyx_n_u_SequenceWithQualities_trim_right __pyx_string_tab[208] #define __pyx_n_u_SequenceWithQualities_write_to_f __pyx_string_tab[209] #define __pyx_n_u_Sequence___getstate __pyx_string_tab[210] #define __pyx_n_u_Sequence___reduce __pyx_string_tab[211] #define __pyx_n_u_Sequence___setstate __pyx_string_tab[212] #define __pyx_n_u_Sequence_add_bases_to_count_arra __pyx_string_tab[213] #define __pyx_n_u_Sequence_get_reverse_complement __pyx_string_tab[214] #define __pyx_n_u_Sequence_trim_left_end __pyx_string_tab[215] #define __pyx_n_u_Sequence_trim_right_end __pyx_string_tab[216] #define __pyx_n_u_Sequence_write_to_fasta_file __pyx_string_tab[217] #define __pyx_n_u_StepVector __pyx_string_tab[218] #define __pyx_n_u_StretchVector __pyx_string_tab[219] #define __pyx_n_u_StringIO __pyx_string_tab[220] #define __pyx_n_u_T __pyx_string_tab[221] #define __pyx_n_u_X __pyx_string_tab[222] #define __pyx_n_u_Z __pyx_string_tab[223] #define __pyx_n_u__13 __pyx_string_tab[224] #define __pyx_n_u_a __pyx_string_tab[225] #define __pyx_n_u_add __pyx_string_tab[226] #define __pyx_n_u_addEntries __pyx_string_tab[227] #define __pyx_n_u_addHeader __pyx_string_tab[228] #define __pyx_n_u_add_bases_to_count_array __pyx_string_tab[229] #define __pyx_n_u_add_chrom __pyx_string_tab[230] #define __pyx_n_u_add_qual_to_count_array __pyx_string_tab[231] #define __pyx_n_u_addval __pyx_string_tab[232] #define __pyx_n_u_aend __pyx_string_tab[233] #define __pyx_n_u_aligned __pyx_string_tab[234] #define __pyx_n_u_alnmt __pyx_string_tab[235] #define __pyx_n_u_append __pyx_string_tab[236] #define __pyx_n_u_apply __pyx_string_tab[237] #define __pyx_n_u_args __pyx_string_tab[238] #define __pyx_n_u_array __pyx_string_tab[239] #define __pyx_n_u_asyncio_coroutines __pyx_string_tab[240] #define __pyx_n_u_auto __pyx_string_tab[241] #define __pyx_n_u_base_to_column __pyx_string_tab[242] #define __pyx_n_u_bowtie_line __pyx_string_tab[243] #define __pyx_n_u_bufsize __pyx_string_tab[244] #define __pyx_n_u_build_cigar_list __pyx_string_tab[245] #define __pyx_n_u_bw __pyx_string_tab[246] #define __pyx_n_u_c __pyx_string_tab[247] #define __pyx_n_u_cStringIO __pyx_string_tab[248] #define __pyx_n_u_characters_per_line __pyx_string_tab[249] #define __pyx_n_u_check __pyx_string_tab[250] #define __pyx_n_u_chrom __pyx_string_tab[251] #define __pyx_n_u_chrom_dict __pyx_string_tab[252] #define __pyx_n_u_chrom_vectors __pyx_string_tab[253] #define __pyx_n_u_chroms __pyx_string_tab[254] #define __pyx_n_u_cigar __pyx_string_tab[255] #define __pyx_n_u_cigar_operation_code_dict __pyx_string_tab[256] #define __pyx_n_u_cigar_operation_codes __pyx_string_tab[257] #define __pyx_n_u_cigar_operation_names __pyx_string_tab[258] #define __pyx_n_u_cigar_pairs __pyx_string_tab[259] #define __pyx_n_u_cigar_string __pyx_string_tab[260] #define __pyx_n_u_cigarlist __pyx_string_tab[261] #define __pyx_n_u_cigartuples __pyx_string_tab[262] #define __pyx_n_u_class __pyx_string_tab[263] #define __pyx_n_u_class_getitem __pyx_string_tab[264] #define __pyx_n_u_clear __pyx_string_tab[265] #define __pyx_n_u_cline_in_traceback __pyx_string_tab[266] #define __pyx_n_u_close __pyx_string_tab[267] #define __pyx_n_u_cls __pyx_string_tab[268] #define __pyx_n_u_code __pyx_string_tab[269] #define __pyx_n_u_collections __pyx_string_tab[270] #define __pyx_n_u_compile __pyx_string_tab[271] #define __pyx_n_u_constr __pyx_string_tab[272] #define __pyx_n_u_contains __pyx_string_tab[273] #define __pyx_n_u_convert_to_phred __pyx_string_tab[274] #define __pyx_n_u_cop __pyx_string_tab[275] #define __pyx_n_u_copy __pyx_string_tab[276] #define __pyx_n_u_copy_2 __pyx_string_tab[277] #define __pyx_n_u_count_array __pyx_string_tab[278] #define __pyx_n_u_create __pyx_string_tab[279] #define __pyx_n_u_create_view __pyx_string_tab[280] #define __pyx_n_u_csv __pyx_string_tab[281] #define __pyx_n_u_cv __pyx_string_tab[282] #define __pyx_n_u_d __pyx_string_tab[283] #define __pyx_n_u_decode __pyx_string_tab[284] #define __pyx_n_u_deleted __pyx_string_tab[285] #define __pyx_n_u_descr __pyx_string_tab[286] #define __pyx_n_u_dict __pyx_string_tab[287] #define __pyx_n_u_dict_2 __pyx_string_tab[288] #define __pyx_n_u_dtype __pyx_string_tab[289] #define __pyx_n_u_empty __pyx_string_tab[290] #define __pyx_n_u_encode __pyx_string_tab[291] #define __pyx_n_u_end __pyx_string_tab[292] #define __pyx_n_u_end_d __pyx_string_tab[293] #define __pyx_n_u_ends __pyx_string_tab[294] #define __pyx_n_u_enter __pyx_string_tab[295] #define __pyx_n_u_entries __pyx_string_tab[296] #define __pyx_n_u_entry __pyx_string_tab[297] #define __pyx_n_u_enumerate __pyx_string_tab[298] #define __pyx_n_u_exit __pyx_string_tab[299] #define __pyx_n_u_extend_to_include __pyx_string_tab[300] #define __pyx_n_u_f __pyx_string_tab[301] #define __pyx_n_u_fasta_file __pyx_string_tab[302] #define __pyx_n_u_fastq_file __pyx_string_tab[303] #define __pyx_n_u_field __pyx_string_tab[304] #define __pyx_n_u_fields __pyx_string_tab[305] #define __pyx_n_u_file_or_filename __pyx_string_tab[306] #define __pyx_n_u_filename __pyx_string_tab[307] #define __pyx_n_u_first __pyx_string_tab[308] #define __pyx_n_u_flag __pyx_string_tab[309] #define __pyx_n_u_flagint __pyx_string_tab[310] #define __pyx_n_u_from_SAM_line __pyx_string_tab[311] #define __pyx_n_u_from_bedgraph_file __pyx_string_tab[312] #define __pyx_n_u_from_bigwig_file __pyx_string_tab[313] #define __pyx_n_u_from_pysam_AlignedRead __pyx_string_tab[314] #define __pyx_n_u_from_pysam_AlignedSegment __pyx_string_tab[315] #define __pyx_n_u_fun __pyx_string_tab[316] #define __pyx_n_u_func __pyx_string_tab[317] #define __pyx_n_u_ga __pyx_string_tab[318] #define __pyx_n_u_get_fastq_str __pyx_string_tab[319] #define __pyx_n_u_get_reverse_complement __pyx_string_tab[320] #define __pyx_n_u_get_sam_line __pyx_string_tab[321] #define __pyx_n_u_getrname __pyx_string_tab[322] #define __pyx_n_u_getstate __pyx_string_tab[323] #define __pyx_n_u_gettid __pyx_string_tab[324] #define __pyx_n_u_getvalue __pyx_string_tab[325] #define __pyx_n_u_gzip __pyx_string_tab[326] #define __pyx_n_u_has_optional_field __pyx_string_tab[327] #define __pyx_n_u_header __pyx_string_tab[328] #define __pyx_n_u_i __pyx_string_tab[329] #define __pyx_n_u_iadd __pyx_string_tab[330] #define __pyx_n_u_iadd___locals_addval __pyx_string_tab[331] #define __pyx_n_u_index __pyx_string_tab[332] #define __pyx_n_u_init __pyx_string_tab[333] #define __pyx_n_u_inserted __pyx_string_tab[334] #define __pyx_n_u_intervals __pyx_string_tab[335] #define __pyx_n_u_is_contained_in __pyx_string_tab[336] #define __pyx_n_u_is_coroutine __pyx_string_tab[337] #define __pyx_n_u_is_duplicate __pyx_string_tab[338] #define __pyx_n_u_is_paired __pyx_string_tab[339] #define __pyx_n_u_is_proper_pair __pyx_string_tab[340] #define __pyx_n_u_is_qcfail __pyx_string_tab[341] #define __pyx_n_u_is_read1 __pyx_string_tab[342] #define __pyx_n_u_is_read2 __pyx_string_tab[343] #define __pyx_n_u_is_reverse __pyx_string_tab[344] #define __pyx_n_u_is_secondary __pyx_string_tab[345] #define __pyx_n_u_is_supplementary __pyx_string_tab[346] #define __pyx_n_u_is_unmapped __pyx_string_tab[347] #define __pyx_n_u_is_vector_of_sets __pyx_string_tab[348] #define __pyx_n_u_isize __pyx_string_tab[349] #define __pyx_n_u_items __pyx_string_tab[350] #define __pyx_n_u_itertools __pyx_string_tab[351] #define __pyx_n_u_iv __pyx_string_tab[352] #define __pyx_n_u_join __pyx_string_tab[353] #define __pyx_n_u_key __pyx_string_tab[354] #define __pyx_n_u_l __pyx_string_tab[355] #define __pyx_n_u_length __pyx_string_tab[356] #define __pyx_n_u_line __pyx_string_tab[357] #define __pyx_n_u_log10 __pyx_string_tab[358] #define __pyx_n_u_main __pyx_string_tab[359] #define __pyx_n_u_make_translation_table_for_comp __pyx_string_tab[360] #define __pyx_n_u_maketrans __pyx_string_tab[361] #define __pyx_n_u_mapping_quality __pyx_string_tab[362] #define __pyx_n_u_mapq __pyx_string_tab[363] #define __pyx_n_u_matched __pyx_string_tab[364] #define __pyx_n_u_mate_aligned __pyx_string_tab[365] #define __pyx_n_u_mate_is_reverse __pyx_string_tab[366] #define __pyx_n_u_mate_is_unmapped __pyx_string_tab[367] #define __pyx_n_u_mate_start __pyx_string_tab[368] #define __pyx_n_u_math __pyx_string_tab[369] #define __pyx_n_u_max_mm_qual __pyx_string_tab[370] #define __pyx_n_u_maxsize __pyx_string_tab[371] #define __pyx_n_u_memmap __pyx_string_tab[372] #define __pyx_n_u_memmap_dir __pyx_string_tab[373] #define __pyx_n_u_mismatch_prop __pyx_string_tab[374] #define __pyx_n_u_missing __pyx_string_tab[375] #define __pyx_n_u_mode __pyx_string_tab[376] #define __pyx_n_u_module __pyx_string_tab[377] #define __pyx_n_u_mpos __pyx_string_tab[378] #define __pyx_n_u_mrnm __pyx_string_tab[379] #define __pyx_n_u_name __pyx_string_tab[380] #define __pyx_n_u_name_2 __pyx_string_tab[381] #define __pyx_n_u_ncv __pyx_string_tab[382] #define __pyx_n_u_ndarray __pyx_string_tab[383] #define __pyx_n_u_new __pyx_string_tab[384] #define __pyx_n_u_newentry __pyx_string_tab[385] #define __pyx_n_u_next_reference_id __pyx_string_tab[386] #define __pyx_n_u_next_reference_start __pyx_string_tab[387] #define __pyx_n_u_none __pyx_string_tab[388] #define __pyx_n_u_noquals __pyx_string_tab[389] #define __pyx_n_u_not_paired_end __pyx_string_tab[390] #define __pyx_n_u_numpy __pyx_string_tab[391] #define __pyx_n_u_offset __pyx_string_tab[392] #define __pyx_n_u_op __pyx_string_tab[393] #define __pyx_n_u_open __pyx_string_tab[394] #define __pyx_n_u_optional_field __pyx_string_tab[395] #define __pyx_n_u_optional_fields __pyx_string_tab[396] #define __pyx_n_u_os __pyx_string_tab[397] #define __pyx_n_u_overlaps __pyx_string_tab[398] #define __pyx_n_u_p __pyx_string_tab[399] #define __pyx_n_u_padded __pyx_string_tab[400] #define __pyx_n_u_paired_end __pyx_string_tab[401] #define __pyx_n_u_parse_cigar __pyx_string_tab[402] #define __pyx_n_u_path __pyx_string_tab[403] #define __pyx_n_u_pattern __pyx_string_tab[404] #define __pyx_n_u_phred __pyx_string_tab[405] #define __pyx_n_u_pop __pyx_string_tab[406] #define __pyx_n_u_pos __pyx_string_tab[407] #define __pyx_n_u_posint __pyx_string_tab[408] #define __pyx_n_u_pyBigWig __pyx_string_tab[409] #define __pyx_n_u_pysam __pyx_string_tab[410] #define __pyx_n_u_pyx_checksum __pyx_string_tab[411] #define __pyx_n_u_pyx_result __pyx_string_tab[412] #define __pyx_n_u_pyx_state __pyx_string_tab[413] #define __pyx_n_u_pyx_type __pyx_string_tab[414] #define __pyx_n_u_pyx_unpickle_Alignment __pyx_string_tab[415] #define __pyx_n_u_pyx_unpickle_AlignmentWithSequ __pyx_string_tab[416] #define __pyx_n_u_pyx_unpickle_BowtieAlignment __pyx_string_tab[417] #define __pyx_n_u_pyx_unpickle_CigarOperation __pyx_string_tab[418] #define __pyx_n_u_pyx_unpickle_SAM_Alignment __pyx_string_tab[419] #define __pyx_n_u_pyx_vtable __pyx_string_tab[420] #define __pyx_n_u_qfrom __pyx_string_tab[421] #define __pyx_n_u_qlen __pyx_string_tab[422] #define __pyx_n_u_qname __pyx_string_tab[423] #define __pyx_n_u_qto __pyx_string_tab[424] #define __pyx_n_u_qual __pyx_string_tab[425] #define __pyx_n_u_qualname __pyx_string_tab[426] #define __pyx_n_u_qualscale __pyx_string_tab[427] #define __pyx_n_u_qualstr __pyx_string_tab[428] #define __pyx_n_u_query_name __pyx_string_tab[429] #define __pyx_n_u_query_qualities __pyx_string_tab[430] #define __pyx_n_u_query_sequence __pyx_string_tab[431] #define __pyx_n_u_query_start __pyx_string_tab[432] #define __pyx_n_u_quote __pyx_string_tab[433] #define __pyx_n_u_quotesafe_split __pyx_string_tab[434] #define __pyx_n_u_r __pyx_string_tab[435] #define __pyx_n_u_range __pyx_string_tab[436] #define __pyx_n_u_range_d __pyx_string_tab[437] #define __pyx_n_u_raw __pyx_string_tab[438] #define __pyx_n_u_raw_optional_fields __pyx_string_tab[439] #define __pyx_n_u_re __pyx_string_tab[440] #define __pyx_n_u_re_cigar_codes __pyx_string_tab[441] #define __pyx_n_u_read __pyx_string_tab[442] #define __pyx_n_u_read_as_aligned __pyx_string_tab[443] #define __pyx_n_u_reduce __pyx_string_tab[444] #define __pyx_n_u_reduce_cython __pyx_string_tab[445] #define __pyx_n_u_reduce_ex __pyx_string_tab[446] #define __pyx_n_u_ref_iv __pyx_string_tab[447] #define __pyx_n_u_ref_left __pyx_string_tab[448] #define __pyx_n_u_reference_end __pyx_string_tab[449] #define __pyx_n_u_reference_id __pyx_string_tab[450] #define __pyx_n_u_reference_start __pyx_string_tab[451] #define __pyx_n_u_rename __pyx_string_tab[452] #define __pyx_n_u_res __pyx_string_tab[453] #define __pyx_n_u_revcomp_of __pyx_string_tab[454] #define __pyx_n_u_reverse_complement __pyx_string_tab[455] #define __pyx_n_u_rfrom __pyx_string_tab[456] #define __pyx_n_u_rlen __pyx_string_tab[457] #define __pyx_n_u_rname __pyx_string_tab[458] #define __pyx_n_u_rstrip __pyx_string_tab[459] #define __pyx_n_u_rto __pyx_string_tab[460] #define __pyx_n_u_s_3 __pyx_string_tab[461] #define __pyx_n_u_samfile __pyx_string_tab[462] #define __pyx_n_u_second __pyx_string_tab[463] #define __pyx_n_u_self __pyx_string_tab[464] #define __pyx_n_u_sep __pyx_string_tab[465] #define __pyx_n_u_separator __pyx_string_tab[466] #define __pyx_n_u_seq __pyx_string_tab[467] #define __pyx_n_u_set_name __pyx_string_tab[468] #define __pyx_n_u_setdefault __pyx_string_tab[469] #define __pyx_n_u_setstate __pyx_string_tab[470] #define __pyx_n_u_setstate_cython __pyx_string_tab[471] #define __pyx_n_u_sf __pyx_string_tab[472] #define __pyx_n_u_shape __pyx_string_tab[473] #define __pyx_n_u_sio __pyx_string_tab[474] #define __pyx_n_u_size __pyx_string_tab[475] #define __pyx_n_u_skipped __pyx_string_tab[476] #define __pyx_n_u_solexa __pyx_string_tab[477] #define __pyx_n_u_split __pyx_string_tab[478] #define __pyx_n_u_start __pyx_string_tab[479] #define __pyx_n_u_start_d __pyx_string_tab[480] #define __pyx_n_u_start_index __pyx_string_tab[481] #define __pyx_n_u_startdiff __pyx_string_tab[482] #define __pyx_n_u_startswith __pyx_string_tab[483] #define __pyx_n_u_state __pyx_string_tab[484] #define __pyx_n_u_stderr __pyx_string_tab[485] #define __pyx_n_u_step __pyx_string_tab[486] #define __pyx_n_u_steps __pyx_string_tab[487] #define __pyx_n_u_stop __pyx_string_tab[488] #define __pyx_n_u_storage __pyx_string_tab[489] #define __pyx_n_u_storage_2 __pyx_string_tab[490] #define __pyx_n_u_strand __pyx_string_tab[491] #define __pyx_n_u_stranded __pyx_string_tab[492] #define __pyx_n_u_stretch __pyx_string_tab[493] #define __pyx_n_u_swq __pyx_string_tab[494] #define __pyx_n_u_sys __pyx_string_tab[495] #define __pyx_n_u_tag __pyx_string_tab[496] #define __pyx_n_u_tags __pyx_string_tab[497] #define __pyx_n_u_tc __pyx_string_tab[498] #define __pyx_n_u_template_length __pyx_string_tab[499] #define __pyx_n_u_test __pyx_string_tab[500] #define __pyx_n_u_tid __pyx_string_tab[501] #define __pyx_n_u_to_pysam_AlignedRead __pyx_string_tab[502] #define __pyx_n_u_to_pysam_AlignedSegment __pyx_string_tab[503] #define __pyx_n_u_track_options __pyx_string_tab[504] #define __pyx_n_u_translate __pyx_string_tab[505] #define __pyx_n_u_trim_left_end __pyx_string_tab[506] #define __pyx_n_u_trim_left_end_with_quals __pyx_string_tab[507] #define __pyx_n_u_trim_right_end __pyx_string_tab[508] #define __pyx_n_u_trim_right_end_with_quals __pyx_string_tab[509] #define __pyx_n_u_type __pyx_string_tab[510] #define __pyx_n_u_type_2 __pyx_string_tab[511] #define __pyx_n_u_typecode __pyx_string_tab[512] #define __pyx_n_u_uint8 __pyx_string_tab[513] #define __pyx_n_u_unknown __pyx_string_tab[514] #define __pyx_n_u_unnamed __pyx_string_tab[515] #define __pyx_n_u_update __pyx_string_tab[516] #define __pyx_n_u_upper __pyx_string_tab[517] #define __pyx_n_u_use_setstate __pyx_string_tab[518] #define __pyx_n_u_v __pyx_string_tab[519] #define __pyx_n_u_value __pyx_string_tab[520] #define __pyx_n_u_values __pyx_string_tab[521] #define __pyx_n_u_vec __pyx_string_tab[522] #define __pyx_n_u_w_2 __pyx_string_tab[523] #define __pyx_n_u_warnings __pyx_string_tab[524] #define __pyx_n_u_write __pyx_string_tab[525] #define __pyx_n_u_write_bedgraph_file __pyx_string_tab[526] #define __pyx_n_u_write_bigwig_file __pyx_string_tab[527] #define __pyx_n_u_write_bigwig_file_locals_write_w __pyx_string_tab[528] #define __pyx_n_u_write_to_fasta_file __pyx_string_tab[529] #define __pyx_n_u_write_to_fastq_file __pyx_string_tab[530] #define __pyx_n_u_write_with_buffer __pyx_string_tab[531] #define __pyx_n_u_x __pyx_string_tab[532] #define __pyx_n_u_y __pyx_string_tab[533] #define __pyx_n_u_zeros __pyx_string_tab[534] #define __pyx_kp_b__12 __pyx_string_tab[535] #define __pyx_kp_b__23 __pyx_string_tab[536] #define __pyx_kp_b__32 __pyx_string_tab[537] #define __pyx_kp_b__33 __pyx_string_tab[538] #define __pyx_kp_b_iso88591_00B_1_a_Qa_Qa_s_7_Q_j_s_7_Q_j_Q __pyx_string_tab[539] #define __pyx_kp_b_iso88591_1F __pyx_string_tab[540] #define __pyx_kp_b_iso88591_1F_2 __pyx_string_tab[541] #define __pyx_kp_b_iso88591_2_4AV1 __pyx_string_tab[542] #define __pyx_kp_b_iso88591_2_iy_a_s_1 __pyx_string_tab[543] #define __pyx_kp_b_iso88591_3d_Jaq __pyx_string_tab[544] #define __pyx_kp_b_iso88591_4A_5QfA __pyx_string_tab[545] #define __pyx_kp_b_iso88591_5 __pyx_string_tab[546] #define __pyx_kp_b_iso88591_6m_RS_q_Cs_S_1M_2S_j_5Rq_U_3a_C __pyx_string_tab[547] #define __pyx_kp_b_iso88591_8_9G1_q_q_G1HAQ_3ay_1_k_q_WAYgW __pyx_string_tab[548] #define __pyx_kp_b_iso88591_A9Gq_7_Q_A_q_Q_4_1_gQa_gQ_Cq_1_r __pyx_string_tab[549] #define __pyx_kp_b_iso88591_ARS0_c_6_83a_y_1_9E_q_r_F_9E_q_r __pyx_string_tab[550] #define __pyx_kp_b_iso88591_AV1 __pyx_string_tab[551] #define __pyx_kp_b_iso88591_A_0 __pyx_string_tab[552] #define __pyx_kp_b_iso88591_A_1 __pyx_string_tab[553] #define __pyx_kp_b_iso88591_A_1_81_4q_b_A_81_4q_A __pyx_string_tab[554] #define __pyx_kp_b_iso88591_A_2XS_AQ_Cq_q_Q_3a_c_S_q __pyx_string_tab[555] #define __pyx_kp_b_iso88591_A_2XS_Cq_A_S_q_Cwb_C_Jd_Q_4z_A_t __pyx_string_tab[556] #define __pyx_kp_b_iso88591_A_3c_1A_4wc_1_AQ_4xw_d_HGCSST_HG __pyx_string_tab[557] #define __pyx_kp_b_iso88591_A_3c_1_4wc_1_1_4xw_d_HGCSST_HG2Q __pyx_string_tab[558] #define __pyx_kp_b_iso88591_A_3c_1_4wc_1_1_4y_t2XWDTTU_HG2Q __pyx_string_tab[559] #define __pyx_kp_b_iso88591_A_3c_1_r __pyx_string_tab[560] #define __pyx_kp_b_iso88591_A_4q_a_4_7_Q_q_4wgQ_t1_AS_r_A_A __pyx_string_tab[561] #define __pyx_kp_b_iso88591_A_7_6_d_fA_4wd_fAXRt1_T_2Q_XWCr __pyx_string_tab[562] #define __pyx_kp_b_iso88591_A_AU_Qa_q __pyx_string_tab[563] #define __pyx_kp_b_iso88591_A_B_c_a_Ql_3b_AQ_Ql_3b_AQ_t1_E_a __pyx_string_tab[564] #define __pyx_kp_b_iso88591_A_C_4z_A_q_A_Q_m1Kq_q_g_q_AQ_E_a __pyx_string_tab[565] #define __pyx_kp_b_iso88591_A_D_V1_ar_ir_a_c __pyx_string_tab[566] #define __pyx_kp_b_iso88591_A_E_Q_q_Cq_q_q __pyx_string_tab[567] #define __pyx_kp_b_iso88591_A_G5_HE_IU_1 __pyx_string_tab[568] #define __pyx_kp_b_iso88591_A_Jb_A_G1_4vS_Ct6_D_4vS_uE_D_d_s __pyx_string_tab[569] #define __pyx_kp_b_iso88591_A_Kt1 __pyx_string_tab[570] #define __pyx_kp_b_iso88591_A_M_V4xt __pyx_string_tab[571] #define __pyx_kp_b_iso88591_A_Q_4t1_G9AT_A_5Q_Q_O3fD_s_Q_wa __pyx_string_tab[572] #define __pyx_kp_b_iso88591_A_Q_4t1_G9AT_F_gQ_D_c_t4vS_q_O7 __pyx_string_tab[573] #define __pyx_kp_b_iso88591_A_Q_D_Kt7_Q_AQ_4z_WHM_AQ_U_XQ_Q __pyx_string_tab[574] #define __pyx_kp_b_iso88591_A_Q_Q_Qb_q_Cq_1_Bj_A_D_uJiq_r_A __pyx_string_tab[575] #define __pyx_kp_b_iso88591_A_Qd_QgQ_7_A_Q_Q_t1_wa_4z_A_q_A __pyx_string_tab[576] #define __pyx_kp_b_iso88591_A_Qd_QgQ_7_A_Q_Q_t1_wa_4z_A_q_A_2 __pyx_string_tab[577] #define __pyx_kp_b_iso88591_A_WBfAQ_3axr_AQ_gU_vV1_hfARq_3fA __pyx_string_tab[578] #define __pyx_kp_b_iso88591_A_XT_Q_Q __pyx_string_tab[579] #define __pyx_kp_b_iso88591_A_XT_t1 __pyx_string_tab[580] #define __pyx_kp_b_iso88591_A_a_D_Kt7_Q_AQ_4z_WHM_AQ_7_Q_A_q __pyx_string_tab[581] #define __pyx_kp_b_iso88591_A_a_F_a_r_Ks_3ar_c_1Bk_A_Q_1Bk_A __pyx_string_tab[582] #define __pyx_kp_b_iso88591_A_ar_U_s_1Cs_3auCq_3ar_s_5_1_ha __pyx_string_tab[583] #define __pyx_kp_b_iso88591_A_at84vT __pyx_string_tab[584] #define __pyx_kp_b_iso88591_A_at84xt6_Q __pyx_string_tab[585] #define __pyx_kp_b_iso88591_A_iq_fA_j_1_l_1 __pyx_string_tab[586] #define __pyx_kp_b_iso88591_A_t1D_at3gRt9D_5_a __pyx_string_tab[587] #define __pyx_kp_b_iso88591_A_t1_A_Q __pyx_string_tab[588] #define __pyx_kp_b_iso88591_A_t_a_vRq __pyx_string_tab[589] #define __pyx_kp_b_iso88591_A_t_c_q_HD_T_6J_a __pyx_string_tab[590] #define __pyx_kp_b_iso88591_A_wfA_E_4uHD_CuCt3hcQZZ_cczz_D_Y __pyx_string_tab[591] #define __pyx_kp_b_iso88591_A_wfA_E_Q_E_U_e1_Q_Q_4q_Yb_1_81A __pyx_string_tab[592] #define __pyx_kp_b_iso88591_B_4wgQ_fA_4wd_fAXRt1_s_fAT_WCr __pyx_string_tab[593] #define __pyx_kp_b_iso88591_I_1_q_4q_b_A_IT_A_q_4q_A_IT_A_4 __pyx_string_tab[594] #define __pyx_kp_b_iso88591_Qd_A_q_1 __pyx_string_tab[595] #define __pyx_kp_b_iso88591_QfA __pyx_string_tab[596] #define __pyx_kp_b_iso88591_SST_V1A_wc_awixr_awhb_r_HBc __pyx_string_tab[597] #define __pyx_kp_b_iso88591_T_2_e4_QQUU_dde_G1F_a_vWE_Q_q_t __pyx_string_tab[598] #define __pyx_kp_b_iso88591_T_2_e4q_G1F_a_vWE_Q_q_t7_c_5I_P __pyx_string_tab[599] #define __pyx_kp_b_iso88591_T_Q_G1F_a_vWE_Q_q_t7_c_T_q_awk __pyx_string_tab[600] #define __pyx_kp_b_iso88591_T_XT_d_hVZZoos_t_K_K_O_O_T_T_X __pyx_string_tab[601] #define __pyx_kp_b_iso88591_T_d_T_gT_G1F_a_vWE_Q_q_t87_s_fG __pyx_string_tab[602] #define __pyx_kp_b_iso88591_VVW_Qd_QgQ_7_A_Q_Q_t1_wa_E_as_1 __pyx_string_tab[603] #define __pyx_kp_b_iso88591_WWX_Qd_QgQ_7_A_Q_Q_t1_wa_E_as_1 __pyx_string_tab[604] #define __pyx_kp_b_iso88591_WX_1_1_ha_5_4s_s_c_c_wa_Q_fF_r __pyx_string_tab[605] #define __pyx_kp_b_iso88591_c_q_7_S_S_81_4q_ay_j_avQa_7_4t1 __pyx_string_tab[606] #define __pyx_kp_b_iso88591_q_0_kQR_0_7_q_nno_1 __pyx_string_tab[607] #define __pyx_kp_b_iso88591_q_0_kQR_1_7_1_2DNRS_1 __pyx_string_tab[608] #define __pyx_kp_b_iso88591_q_0_kQR_7_0_1B_PQ_1 __pyx_string_tab[609] #define __pyx_kp_b_iso88591_q_0_kQR_7_q0_a_1 __pyx_string_tab[610] #define __pyx_kp_b_iso88591_q_0_kQR_9HAQ_7_1L_a_1 __pyx_string_tab[611] #define __pyx_kp_b_iso88591_q_a __pyx_string_tab[612] #define __pyx_n_b_ACGTacgt __pyx_string_tab[613] #define __pyx_n_b_TGCAtgca __pyx_string_tab[614] #define __pyx_float_0_ __pyx_number_tab[0] #define __pyx_int_0 __pyx_number_tab[1] #define __pyx_int_neg_1 __pyx_number_tab[2] #define __pyx_int_1 __pyx_number_tab[3] #define __pyx_int_2 __pyx_number_tab[4] #define __pyx_int_3 __pyx_number_tab[5] #define __pyx_int_4 __pyx_number_tab[6] #define __pyx_int_5 __pyx_number_tab[7] #define __pyx_int_10 __pyx_number_tab[8] #define __pyx_int_11 __pyx_number_tab[9] #define __pyx_int_16 __pyx_number_tab[10] #define __pyx_int_70 __pyx_number_tab[11] #define __pyx_int_1450081 __pyx_number_tab[12] #define __pyx_int_9874465 __pyx_number_tab[13] #define __pyx_int_240641895 __pyx_number_tab[14] #define __pyx_int_246267685 __pyx_number_tab[15] #define __pyx_int_260241271 __pyx_number_tab[16] /* #### Code section: module_state_clear ### */ #if CYTHON_USE_MODULE_STATE static CYTHON_SMALL_CODE int __pyx_m_clear(PyObject *m) { __pyx_mstatetype *clear_module_state = __Pyx_PyModule_GetState(m); if (!clear_module_state) return 0; Py_CLEAR(clear_module_state->__pyx_d); Py_CLEAR(clear_module_state->__pyx_b); Py_CLEAR(clear_module_state->__pyx_cython_runtime); Py_CLEAR(clear_module_state->__pyx_empty_tuple); Py_CLEAR(clear_module_state->__pyx_empty_bytes); 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Py_VISIT(traverse_module_state->__pyx_ptype_5HTSeq_6_HTSeq_BowtieAlignment); Py_VISIT(traverse_module_state->__pyx_type_5HTSeq_6_HTSeq_BowtieAlignment); Py_VISIT(traverse_module_state->__pyx_ptype_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__); Py_VISIT(traverse_module_state->__pyx_type_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__); Py_VISIT(traverse_module_state->__pyx_k_); Py_VISIT(traverse_module_state->__pyx_k__16); for (int i=0; i<5; ++i) { __Pyx_VISIT_CONST(traverse_module_state->__pyx_slice[i]); } for (int i=0; i<17; ++i) { __Pyx_VISIT_CONST(traverse_module_state->__pyx_tuple[i]); } for (int i=0; i<74; ++i) { __Pyx_VISIT_CONST(traverse_module_state->__pyx_codeobj_tab[i]); } for (int i=0; i<615; ++i) { __Pyx_VISIT_CONST(traverse_module_state->__pyx_string_tab[i]); } for (int i=0; i<17; ++i) { __Pyx_VISIT_CONST(traverse_module_state->__pyx_number_tab[i]); } /* #### Code section: module_state_traverse_contents ### */ /* CommonTypesMetaclass.module_state_traverse */ Py_VISIT(traverse_module_state->__pyx_CommonTypesMetaclassType); /* CythonFunctionShared.module_state_traverse */ Py_VISIT(traverse_module_state->__pyx_CyFunctionType); /* #### Code section: module_state_traverse_end ### */ return 0; } #endif /* #### Code section: module_code ### */ /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":243 * cdef int type_num * * @property # <<<<<<<<<<<<<< * cdef inline npy_intp itemsize(self) noexcept nogil: * return PyDataType_ELSIZE(self) */ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_8itemsize_itemsize(PyArray_Descr *__pyx_v_self) { npy_intp __pyx_r; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":245 * @property * cdef inline npy_intp itemsize(self) noexcept nogil: * return PyDataType_ELSIZE(self) # <<<<<<<<<<<<<< * * @property */ __pyx_r = PyDataType_ELSIZE(__pyx_v_self); goto __pyx_L0; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":243 * cdef int type_num * * @property # <<<<<<<<<<<<<< * cdef inline npy_intp itemsize(self) noexcept nogil: * return PyDataType_ELSIZE(self) */ /* function exit code */ __pyx_L0:; return __pyx_r; } /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":247 * return PyDataType_ELSIZE(self) * * @property # <<<<<<<<<<<<<< * cdef inline npy_intp alignment(self) noexcept nogil: * return PyDataType_ALIGNMENT(self) */ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_9alignment_alignment(PyArray_Descr *__pyx_v_self) { npy_intp __pyx_r; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":249 * @property * cdef inline npy_intp alignment(self) noexcept nogil: * return PyDataType_ALIGNMENT(self) # <<<<<<<<<<<<<< * * # Use fields/names with care as they may be NULL. You must check */ __pyx_r = PyDataType_ALIGNMENT(__pyx_v_self); goto __pyx_L0; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":247 * return PyDataType_ELSIZE(self) * * @property # <<<<<<<<<<<<<< * cdef inline npy_intp alignment(self) noexcept nogil: * return PyDataType_ALIGNMENT(self) */ /* function exit code */ __pyx_L0:; return __pyx_r; } /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":253 * # Use fields/names with care as they may be NULL. You must check * # for this using PyDataType_HASFIELDS. * @property # <<<<<<<<<<<<<< * cdef inline object fields(self): * return PyDataType_FIELDS(self) */ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_6fields_fields(PyArray_Descr *__pyx_v_self) { PyObject *__pyx_r = NULL; __Pyx_RefNannyDeclarations PyObject *__pyx_t_1; __Pyx_RefNannySetupContext("fields", 0); /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":255 * @property * cdef inline object fields(self): * return PyDataType_FIELDS(self) # <<<<<<<<<<<<<< * * @property */ __Pyx_XDECREF(__pyx_r); __pyx_t_1 = PyDataType_FIELDS(__pyx_v_self); __Pyx_INCREF(((PyObject *)__pyx_t_1)); __pyx_r = ((PyObject *)__pyx_t_1); goto __pyx_L0; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":253 * # Use fields/names with care as they may be NULL. You must check * # for this using PyDataType_HASFIELDS. * @property # <<<<<<<<<<<<<< * cdef inline object fields(self): * return PyDataType_FIELDS(self) */ /* function exit code */ __pyx_L0:; __Pyx_XGIVEREF(__pyx_r); __Pyx_RefNannyFinishContext(); return __pyx_r; } /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":257 * return PyDataType_FIELDS(self) * * @property # <<<<<<<<<<<<<< * cdef inline tuple names(self): * return PyDataType_NAMES(self) */ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_5names_names(PyArray_Descr *__pyx_v_self) { PyObject *__pyx_r = NULL; __Pyx_RefNannyDeclarations PyObject *__pyx_t_1; __Pyx_RefNannySetupContext("names", 0); /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":259 * @property * cdef inline tuple names(self): * return PyDataType_NAMES(self) # <<<<<<<<<<<<<< * * # Use PyDataType_HASSUBARRAY to test whether this field is */ __Pyx_XDECREF(__pyx_r); __pyx_t_1 = PyDataType_NAMES(__pyx_v_self); __Pyx_INCREF(((PyObject*)__pyx_t_1)); __pyx_r = ((PyObject*)__pyx_t_1); goto __pyx_L0; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":257 * return PyDataType_FIELDS(self) * * @property # <<<<<<<<<<<<<< * cdef inline tuple names(self): * return PyDataType_NAMES(self) */ /* function exit code */ __pyx_L0:; __Pyx_XGIVEREF(__pyx_r); __Pyx_RefNannyFinishContext(); return __pyx_r; } /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":264 * # valid (the pointer can be NULL). Most users should access * # this field via the inline helper method PyDataType_SHAPE. * @property # <<<<<<<<<<<<<< * cdef inline PyArray_ArrayDescr* subarray(self) noexcept nogil: * return PyDataType_SUBARRAY(self) */ static CYTHON_INLINE PyArray_ArrayDescr *__pyx_f_5numpy_5dtype_8subarray_subarray(PyArray_Descr *__pyx_v_self) { PyArray_ArrayDescr *__pyx_r; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":266 * @property * cdef inline PyArray_ArrayDescr* subarray(self) noexcept nogil: * return PyDataType_SUBARRAY(self) # <<<<<<<<<<<<<< * * @property */ __pyx_r = PyDataType_SUBARRAY(__pyx_v_self); goto __pyx_L0; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":264 * # valid (the pointer can be NULL). Most users should access * # this field via the inline helper method PyDataType_SHAPE. * @property # <<<<<<<<<<<<<< * cdef inline PyArray_ArrayDescr* subarray(self) noexcept nogil: * return PyDataType_SUBARRAY(self) */ /* function exit code */ __pyx_L0:; return __pyx_r; } /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":268 * return PyDataType_SUBARRAY(self) * * @property # <<<<<<<<<<<<<< * cdef inline npy_uint64 flags(self) noexcept nogil: * """The data types flags.""" */ static CYTHON_INLINE npy_uint64 __pyx_f_5numpy_5dtype_5flags_flags(PyArray_Descr *__pyx_v_self) { npy_uint64 __pyx_r; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":271 * cdef inline npy_uint64 flags(self) noexcept nogil: * """The data types flags.""" * return PyDataType_FLAGS(self) # <<<<<<<<<<<<<< * * */ __pyx_r = PyDataType_FLAGS(__pyx_v_self); goto __pyx_L0; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":268 * return PyDataType_SUBARRAY(self) * * @property # <<<<<<<<<<<<<< * cdef inline npy_uint64 flags(self) noexcept nogil: * """The data types flags.""" */ /* function exit code */ __pyx_L0:; return __pyx_r; } /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":280 * ctypedef class numpy.broadcast [object PyArrayMultiIterObject, check_size ignore]: * * @property # <<<<<<<<<<<<<< * cdef inline int numiter(self) noexcept nogil: * """The number of arrays that need to be broadcast to the same shape.""" */ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_7numiter_numiter(PyArrayMultiIterObject *__pyx_v_self) { int __pyx_r; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":283 * cdef inline int numiter(self) noexcept nogil: * """The number of arrays that need to be broadcast to the same shape.""" * return PyArray_MultiIter_NUMITER(self) # <<<<<<<<<<<<<< * * @property */ __pyx_r = PyArray_MultiIter_NUMITER(__pyx_v_self); goto __pyx_L0; /* "../tmp/pip-build-env-n34eltaq/overlay/lib/python3.12/site-packages/numpy/__init__.cython-30.pxd":280 * ctypedef class numpy.broadcast [object PyArrayMultiIterObject, check_size ignore]: * * @property # <<<<<<<<<<<<<< * cdef inline int numiter(self) noexcept nogil: * """The number of arrays that need to be broadcast to the same shape.""" */ /* function exit code */ __pyx_L0:; 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__pyx_r = 0; __pyx_L0:; __Pyx_XGIVEREF(__pyx_r); __Pyx_RefNannyFinishContext(); return __pyx_r; } /* #### Code section: module_exttypes ### */ static struct __pyx_vtabstruct_5HTSeq_6_HTSeq_GenomicInterval __pyx_vtable_5HTSeq_6_HTSeq_GenomicInterval; static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_GenomicInterval(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *p; PyObject *o; o = __Pyx_AllocateExtensionType(t, 0); if (unlikely(!o)) return 0; p = ((struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *)o); p->__pyx_vtab = __pyx_vtabptr_5HTSeq_6_HTSeq_GenomicInterval; p->chrom = ((PyObject*)Py_None); Py_INCREF(Py_None); p->_strand = ((PyObject*)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5HTSeq_6_HTSeq_GenomicInterval(PyObject *o) { struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *p = (struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely(__Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && (!PyType_IS_GC(Py_TYPE(o)) || !__Pyx_PyObject_GC_IsFinalized(o))) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5HTSeq_6_HTSeq_GenomicInterval) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif Py_CLEAR(p->chrom); Py_CLEAR(p->_strand); PyTypeObject *tp = Py_TYPE(o); #if CYTHON_USE_TYPE_SLOTS (*tp->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(tp, Py_tp_free); if (tp_free) tp_free(o); } #endif #if CYTHON_USE_TYPE_SPECS Py_DECREF(tp); #endif } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_strand(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_6strand_3__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_strand(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_6strand_1__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_length(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_6length_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_length(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_6length_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_start_d(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_7start_d_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_start_d(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_7start_d_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_end_d(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_5end_d_1__get__(o); } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_start_as_pos(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_12start_as_pos_1__get__(o); } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_end_as_pos(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_10end_as_pos_1__get__(o); } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_start_d_as_pos(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_14start_d_as_pos_1__get__(o); } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_end_d_as_pos(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_12end_d_as_pos_1__get__(o); } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_chrom(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_5chrom_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_chrom(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_5chrom_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_5chrom_5__del__(o); } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_start(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_5start_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_start(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_5start_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_end(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_3end_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_end(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_3end_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyMethodDef __pyx_methods_5HTSeq_6_HTSeq_GenomicInterval[] = { {"__reduce__", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_3__reduce__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"__copy__", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_5__copy__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"range", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_21range, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5HTSeq_6_HTSeq_15GenomicInterval_20range}, {"range_d", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_23range_d, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5HTSeq_6_HTSeq_15GenomicInterval_22range_d}, {"copy", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_27copy, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_5HTSeq_6_HTSeq_GenomicInterval[] = { {"strand", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_strand, __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_strand, 0, 0}, {"length", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_length, __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_length, PyDoc_STR("The length is calculated as end - start. If you set the length,\n 'start_d' will be preserved, i.e., 'end' is changed, unless the strand\n is '-', in which case 'start' is changed."), 0}, {"start_d", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_start_d, __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_start_d, PyDoc_STR("See the class docstring for the meaning of the 'directional start'.\n Note that if you set 'start_d', both the start and the end are changed,\n such the interval gets the requested new directional start and its\n length stays unchanged."), 0}, {"end_d", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_end_d, 0, 0, 0}, {"start_as_pos", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_start_as_pos, 0, 0, 0}, {"end_as_pos", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_end_as_pos, 0, 0, 0}, {"start_d_as_pos", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_start_d_as_pos, 0, 0, 0}, {"end_d_as_pos", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_end_d_as_pos, 0, 0, 0}, {"chrom", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_chrom, __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_chrom, 0, 0}, {"start", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_start, __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_start, 0, 0}, {"end", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_end, __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_end, 0, 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5HTSeq_6_HTSeq_GenomicInterval_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5HTSeq_6_HTSeq_GenomicInterval}, {Py_tp_repr, (void *)__pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_7__repr__}, {Py_tp_hash, (void *)__pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_13__hash__}, {Py_tp_str, (void *)__pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_9__str__}, {Py_tp_doc, (void *)PyDoc_STR("A range of consecutive positions on a reference genome.\n\n Properties:\n\n chrom: The name of a sequence (i.e., chromosome, contig, etc.).\n start: The start of the interval. Even on the reverse strand,\n this is always the smaller of the two values 'start' and 'end'.\n Note that all positions should be given as 0-based value!\n end: The end of the interval. Following Python convention for\n ranges, this in one more than the coordinate of the last base\n that is considered part of the sequence.\n strand: The strand, as a single character, '+' or '-'. '.' indicates\n that the strand is irrelavant. (Alternatively, pass a Strand object.)\n length: The length of the interval, i.e., end - start\n start_d: The \"directional start\" position. This is the position of the\n first base of the interval, taking the strand into account. Hence,\n this is the same as 'start' except when strand == '-', in which\n case it is end-1.\n end_d: The \"directional end\": Usually, the same as 'end', but for\n strand=='-1', it is start-1.\n ")}, {Py_tp_richcompare, (void *)__pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_11__richcmp__}, {Py_tp_methods, (void *)__pyx_methods_5HTSeq_6_HTSeq_GenomicInterval}, {Py_tp_getset, (void *)__pyx_getsets_5HTSeq_6_HTSeq_GenomicInterval}, {Py_tp_init, (void *)__pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5HTSeq_6_HTSeq_GenomicInterval}, {0, 0}, }; static PyType_Spec __pyx_type_5HTSeq_6_HTSeq_GenomicInterval_spec = { "HTSeq._HTSeq.GenomicInterval", sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, __pyx_type_5HTSeq_6_HTSeq_GenomicInterval_slots, }; #else static PyTypeObject __pyx_type_5HTSeq_6_HTSeq_GenomicInterval = { PyVarObject_HEAD_INIT(0, 0) "HTSeq._HTSeq.""GenomicInterval", /*tp_name*/ sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5HTSeq_6_HTSeq_GenomicInterval, /*tp_dealloc*/ 0, /*tp_vectorcall_offset*/ 0, /*tp_getattr*/ 0, /*tp_setattr*/ 0, /*tp_as_async*/ __pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_7__repr__, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ __pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_13__hash__, /*tp_hash*/ 0, /*tp_call*/ __pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_9__str__, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, /*tp_flags*/ PyDoc_STR("A range of consecutive positions on a reference genome.\n\n Properties:\n\n chrom: The name of a sequence (i.e., chromosome, contig, etc.).\n start: The start of the interval. Even on the reverse strand,\n this is always the smaller of the two values 'start' and 'end'.\n Note that all positions should be given as 0-based value!\n end: The end of the interval. Following Python convention for\n ranges, this in one more than the coordinate of the last base\n that is considered part of the sequence.\n strand: The strand, as a single character, '+' or '-'. '.' indicates\n that the strand is irrelavant. (Alternatively, pass a Strand object.)\n length: The length of the interval, i.e., end - start\n start_d: The \"directional start\" position. This is the position of the\n first base of the interval, taking the strand into account. Hence,\n this is the same as 'start' except when strand == '-', in which\n case it is end-1.\n end_d: The \"directional end\": Usually, the same as 'end', but for\n strand=='-1', it is start-1.\n "), /*tp_doc*/ 0, /*tp_traverse*/ 0, /*tp_clear*/ __pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_11__richcmp__, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5HTSeq_6_HTSeq_GenomicInterval, /*tp_methods*/ 0, /*tp_members*/ __pyx_getsets_5HTSeq_6_HTSeq_GenomicInterval, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5HTSeq_6_HTSeq_15GenomicInterval_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5HTSeq_6_HTSeq_GenomicInterval, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #if !CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static struct __pyx_vtabstruct_5HTSeq_6_HTSeq_GenomicPosition __pyx_vtable_5HTSeq_6_HTSeq_GenomicPosition; static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_GenomicPosition(PyTypeObject *t, PyObject *a, PyObject *k) { struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition *p; PyObject *o = __pyx_tp_new_5HTSeq_6_HTSeq_GenomicInterval(t, a, k); if (unlikely(!o)) return 0; p = ((struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition *)o); p->__pyx_base.__pyx_vtab = (struct __pyx_vtabstruct_5HTSeq_6_HTSeq_GenomicInterval*)__pyx_vtabptr_5HTSeq_6_HTSeq_GenomicPosition; return o; } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicPosition_pos(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_15GenomicPosition_3pos_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_15GenomicPosition_pos(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_15GenomicPosition_3pos_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicPosition_end(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_15GenomicPosition_3end_1__get__(o); } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicPosition_length(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_15GenomicPosition_6length_1__get__(o); } static PyMethodDef __pyx_methods_5HTSeq_6_HTSeq_GenomicPosition[] = { {"__reduce__", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_15GenomicPosition_7__reduce__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"copy", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_15GenomicPosition_9copy, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_5HTSeq_6_HTSeq_GenomicPosition[] = { {"pos", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicPosition_pos, __pyx_setprop_5HTSeq_6_HTSeq_15GenomicPosition_pos, PyDoc_STR("Alias for 'start_d'."), 0}, {"end", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicPosition_end, 0, 0, 0}, {"length", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicPosition_length, 0, 0, 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5HTSeq_6_HTSeq_GenomicPosition_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5HTSeq_6_HTSeq_GenomicInterval}, {Py_tp_repr, (void *)__pyx_pw_5HTSeq_6_HTSeq_15GenomicPosition_3__repr__}, {Py_tp_str, (void *)__pyx_pw_5HTSeq_6_HTSeq_15GenomicPosition_5__str__}, {Py_tp_doc, (void *)PyDoc_STR("Position of a nucleotide or base pair on a reference genome.\n\n Properties:\n chrom: The name of a sequence (i.e., chromosome, contig, etc.).\n pos: The position on the sequence specified by seqname.\n The position should always be given as 0-based value!\n strand: The strand, as a single character, '+' or '-'. '.' indicates\n that the strand is irrelavant.\n\n The GenomicPosition class is derived from GenomicInterval. Hence,\n a GenomicPosition is always a GenomicInterval of length 1. Do not tinker\n with the exposed GenomeInterval properties.\n ")}, {Py_tp_methods, (void *)__pyx_methods_5HTSeq_6_HTSeq_GenomicPosition}, {Py_tp_getset, (void *)__pyx_getsets_5HTSeq_6_HTSeq_GenomicPosition}, {Py_tp_init, (void *)__pyx_pw_5HTSeq_6_HTSeq_15GenomicPosition_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5HTSeq_6_HTSeq_GenomicPosition}, {0, 0}, }; static PyType_Spec __pyx_type_5HTSeq_6_HTSeq_GenomicPosition_spec = { "HTSeq._HTSeq.GenomicPosition", sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, __pyx_type_5HTSeq_6_HTSeq_GenomicPosition_slots, }; #else static PyTypeObject __pyx_type_5HTSeq_6_HTSeq_GenomicPosition = { PyVarObject_HEAD_INIT(0, 0) "HTSeq._HTSeq.""GenomicPosition", /*tp_name*/ sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5HTSeq_6_HTSeq_GenomicInterval, /*tp_dealloc*/ 0, /*tp_vectorcall_offset*/ 0, /*tp_getattr*/ 0, /*tp_setattr*/ 0, /*tp_as_async*/ __pyx_pw_5HTSeq_6_HTSeq_15GenomicPosition_3__repr__, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ __pyx_pw_5HTSeq_6_HTSeq_15GenomicPosition_5__str__, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, /*tp_flags*/ PyDoc_STR("Position of a nucleotide or base pair on a reference genome.\n\n Properties:\n chrom: The name of a sequence (i.e., chromosome, contig, etc.).\n pos: The position on the sequence specified by seqname.\n The position should always be given as 0-based value!\n strand: The strand, as a single character, '+' or '-'. '.' indicates\n that the strand is irrelavant.\n\n The GenomicPosition class is derived from GenomicInterval. Hence,\n a GenomicPosition is always a GenomicInterval of length 1. Do not tinker\n with the exposed GenomeInterval properties.\n "), /*tp_doc*/ 0, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5HTSeq_6_HTSeq_GenomicPosition, /*tp_methods*/ 0, /*tp_members*/ __pyx_getsets_5HTSeq_6_HTSeq_GenomicPosition, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5HTSeq_6_HTSeq_15GenomicPosition_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5HTSeq_6_HTSeq_GenomicPosition, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #if !CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static struct __pyx_vtabstruct_5HTSeq_6_HTSeq_Sequence __pyx_vtable_5HTSeq_6_HTSeq_Sequence; static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_Sequence(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *p; PyObject *o; o = __Pyx_AllocateExtensionType(t, 0); if (unlikely(!o)) return 0; p = ((struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *)o); p->__pyx_vtab = __pyx_vtabptr_5HTSeq_6_HTSeq_Sequence; p->seq = ((PyObject*)Py_None); Py_INCREF(Py_None); p->name = ((PyObject*)Py_None); Py_INCREF(Py_None); p->descr = ((PyObject*)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5HTSeq_6_HTSeq_Sequence(PyObject *o) { struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *p = (struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely(__Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && (!PyType_IS_GC(Py_TYPE(o)) || !__Pyx_PyObject_GC_IsFinalized(o))) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5HTSeq_6_HTSeq_Sequence) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif Py_CLEAR(p->seq); Py_CLEAR(p->name); Py_CLEAR(p->descr); PyTypeObject *tp = Py_TYPE(o); #if CYTHON_USE_TYPE_SLOTS (*tp->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(tp, Py_tp_free); if (tp_free) tp_free(o); } #endif #if CYTHON_USE_TYPE_SPECS Py_DECREF(tp); #endif } static PyObject *__pyx_sq_item_5HTSeq_6_HTSeq_Sequence(PyObject *o, Py_ssize_t i) { PyObject *r; PyObject *x = PyLong_FromSsize_t(i); if(!x) return 0; #if CYTHON_USE_TYPE_SLOTS || (!CYTHON_USE_TYPE_SPECS && __PYX_LIMITED_VERSION_HEX < 0x030A0000) r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x); #else r = ((binaryfunc)PyType_GetSlot(Py_TYPE(o), Py_mp_subscript))(o, x); #endif Py_DECREF(x); return r; } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_8Sequence_seq(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_8Sequence_3seq_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_8Sequence_seq(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_8Sequence_3seq_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_8Sequence_3seq_5__del__(o); } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_8Sequence_name(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_8Sequence_4name_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_8Sequence_name(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_8Sequence_4name_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_8Sequence_4name_5__del__(o); } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_8Sequence_descr(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_8Sequence_5descr_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_8Sequence_descr(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_8Sequence_5descr_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_8Sequence_5descr_5__del__(o); } } static PyMethodDef __pyx_methods_5HTSeq_6_HTSeq_Sequence[] = { {"__getstate__", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_8Sequence_13__getstate__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"__setstate__", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_8Sequence_15__setstate__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"__reduce__", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_8Sequence_17__reduce__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"write_to_fasta_file", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_8Sequence_19write_to_fasta_file, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5HTSeq_6_HTSeq_8Sequence_18write_to_fasta_file}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_5HTSeq_6_HTSeq_Sequence[] = { {"seq", __pyx_getprop_5HTSeq_6_HTSeq_8Sequence_seq, __pyx_setprop_5HTSeq_6_HTSeq_8Sequence_seq, 0, 0}, {"name", __pyx_getprop_5HTSeq_6_HTSeq_8Sequence_name, __pyx_setprop_5HTSeq_6_HTSeq_8Sequence_name, 0, 0}, {"descr", __pyx_getprop_5HTSeq_6_HTSeq_8Sequence_descr, __pyx_setprop_5HTSeq_6_HTSeq_8Sequence_descr, 0, 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5HTSeq_6_HTSeq_Sequence_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5HTSeq_6_HTSeq_Sequence}, {Py_tp_repr, (void *)__pyx_pw_5HTSeq_6_HTSeq_8Sequence_7__repr__}, {Py_sq_length, (void *)__pyx_pw_5HTSeq_6_HTSeq_8Sequence_9__len__}, {Py_sq_item, (void *)__pyx_sq_item_5HTSeq_6_HTSeq_Sequence}, {Py_mp_length, (void *)__pyx_pw_5HTSeq_6_HTSeq_8Sequence_9__len__}, {Py_mp_subscript, (void *)__pyx_pw_5HTSeq_6_HTSeq_8Sequence_11__getitem__}, {Py_tp_str, (void *)__pyx_pw_5HTSeq_6_HTSeq_8Sequence_5__str__}, {Py_tp_doc, (void *)PyDoc_STR("A Sequence, typically of DNA, with a name.")}, {Py_tp_methods, (void *)__pyx_methods_5HTSeq_6_HTSeq_Sequence}, {Py_tp_getset, (void *)__pyx_getsets_5HTSeq_6_HTSeq_Sequence}, {Py_tp_init, (void *)__pyx_pw_5HTSeq_6_HTSeq_8Sequence_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5HTSeq_6_HTSeq_Sequence}, {0, 0}, }; static PyType_Spec __pyx_type_5HTSeq_6_HTSeq_Sequence_spec = { "HTSeq._HTSeq.Sequence", sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, __pyx_type_5HTSeq_6_HTSeq_Sequence_slots, }; #else static PySequenceMethods __pyx_tp_as_sequence_Sequence = { __pyx_pw_5HTSeq_6_HTSeq_8Sequence_9__len__, /*sq_length*/ 0, /*sq_concat*/ 0, /*sq_repeat*/ __pyx_sq_item_5HTSeq_6_HTSeq_Sequence, /*sq_item*/ 0, /*sq_slice*/ 0, /*sq_ass_item*/ 0, /*sq_ass_slice*/ 0, /*sq_contains*/ 0, /*sq_inplace_concat*/ 0, /*sq_inplace_repeat*/ }; static PyMappingMethods __pyx_tp_as_mapping_Sequence = { __pyx_pw_5HTSeq_6_HTSeq_8Sequence_9__len__, /*mp_length*/ __pyx_pw_5HTSeq_6_HTSeq_8Sequence_11__getitem__, /*mp_subscript*/ 0, /*mp_ass_subscript*/ }; static PyTypeObject __pyx_type_5HTSeq_6_HTSeq_Sequence = { PyVarObject_HEAD_INIT(0, 0) "HTSeq._HTSeq.""Sequence", /*tp_name*/ sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5HTSeq_6_HTSeq_Sequence, /*tp_dealloc*/ 0, /*tp_vectorcall_offset*/ 0, /*tp_getattr*/ 0, /*tp_setattr*/ 0, /*tp_as_async*/ __pyx_pw_5HTSeq_6_HTSeq_8Sequence_7__repr__, /*tp_repr*/ 0, /*tp_as_number*/ &__pyx_tp_as_sequence_Sequence, /*tp_as_sequence*/ &__pyx_tp_as_mapping_Sequence, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ __pyx_pw_5HTSeq_6_HTSeq_8Sequence_5__str__, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, /*tp_flags*/ PyDoc_STR("A Sequence, typically of DNA, with a name."), /*tp_doc*/ 0, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5HTSeq_6_HTSeq_Sequence, /*tp_methods*/ 0, /*tp_members*/ __pyx_getsets_5HTSeq_6_HTSeq_Sequence, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5HTSeq_6_HTSeq_8Sequence_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5HTSeq_6_HTSeq_Sequence, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #if !CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static struct __pyx_vtabstruct_5HTSeq_6_HTSeq_SequenceWithQualities __pyx_vtable_5HTSeq_6_HTSeq_SequenceWithQualities; static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_SequenceWithQualities(PyTypeObject *t, PyObject *a, PyObject *k) { struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *p; PyObject *o = __pyx_tp_new_5HTSeq_6_HTSeq_Sequence(t, a, k); if (unlikely(!o)) return 0; p = ((struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *)o); p->__pyx_base.__pyx_vtab = (struct __pyx_vtabstruct_5HTSeq_6_HTSeq_Sequence*)__pyx_vtabptr_5HTSeq_6_HTSeq_SequenceWithQualities; p->_qualstr = ((PyObject*)Py_None); Py_INCREF(Py_None); p->_qualstr_phred = ((PyObject*)Py_None); Py_INCREF(Py_None); p->_qualscale = ((PyObject*)Py_None); Py_INCREF(Py_None); p->_qualarr = Py_None; Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5HTSeq_6_HTSeq_SequenceWithQualities(PyObject *o) { struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *p = (struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely(__Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5HTSeq_6_HTSeq_SequenceWithQualities) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->_qualstr); Py_CLEAR(p->_qualstr_phred); Py_CLEAR(p->_qualscale); Py_CLEAR(p->_qualarr); __pyx_tp_dealloc_5HTSeq_6_HTSeq_Sequence(o); } static int __pyx_tp_traverse_5HTSeq_6_HTSeq_SequenceWithQualities(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *p = (struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *)o; #if !CYTHON_USE_MODULE_STATE e = 0; if (likely(__pyx_mstate_global->__pyx_ptype_5HTSeq_6_HTSeq_Sequence)) { traverseproc traverse = __Pyx_PyType_GetSlot(__pyx_mstate_global->__pyx_ptype_5HTSeq_6_HTSeq_Sequence, tp_traverse, traverseproc); if (traverse) { e = traverse(o, v, a); } } else #endif { e = __Pyx_call_next_tp_traverse(o, v, a, __pyx_tp_traverse_5HTSeq_6_HTSeq_SequenceWithQualities); } if (e) return e; { e = __Pyx_call_type_traverse(o, 0, v, a); if (e) return e; } if (p->_qualarr) { e = (*v)(p->_qualarr, a); if (e) return e; } return 0; } static int __pyx_tp_clear_5HTSeq_6_HTSeq_SequenceWithQualities(PyObject *o) { PyObject* tmp; struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *p = (struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *)o; #if !CYTHON_USE_MODULE_STATE if (likely(__pyx_mstate_global->__pyx_ptype_5HTSeq_6_HTSeq_Sequence)) { inquiry clear = __Pyx_PyType_GetSlot(__pyx_mstate_global->__pyx_ptype_5HTSeq_6_HTSeq_Sequence, tp_clear, inquiry); if (clear) clear(o); } else #endif { __Pyx_call_next_tp_clear(o, __pyx_tp_clear_5HTSeq_6_HTSeq_SequenceWithQualities); } tmp = ((PyObject*)p->_qualarr); p->_qualarr = Py_None; Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_sq_item_5HTSeq_6_HTSeq_SequenceWithQualities(PyObject *o, Py_ssize_t i) { PyObject *r; PyObject *x = PyLong_FromSsize_t(i); if(!x) return 0; #if CYTHON_USE_TYPE_SLOTS || (!CYTHON_USE_TYPE_SPECS && __PYX_LIMITED_VERSION_HEX < 0x030A0000) r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x); #else r = ((binaryfunc)PyType_GetSlot(Py_TYPE(o), Py_mp_subscript))(o, x); #endif Py_DECREF(x); return r; } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_21SequenceWithQualities_qual(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_21SequenceWithQualities_4qual_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_21SequenceWithQualities_qual(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_21SequenceWithQualities_4qual_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_21SequenceWithQualities_qualstr(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_21SequenceWithQualities_7qualstr_1__get__(o); } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_21SequenceWithQualities__qualstr(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_21SequenceWithQualities_8_qualstr_1__get__(o); } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_21SequenceWithQualities__qualstr_phred(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_21SequenceWithQualities_14_qualstr_phred_1__get__(o); } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_21SequenceWithQualities__qualscale(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_21SequenceWithQualities_10_qualscale_1__get__(o); } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_21SequenceWithQualities__qualarr(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_21SequenceWithQualities_8_qualarr_1__get__(o); } static PyMethodDef __pyx_methods_5HTSeq_6_HTSeq_SequenceWithQualities[] = { {"write_to_fastq_file", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_21SequenceWithQualities_7write_to_fastq_file, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"get_fastq_str", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_21SequenceWithQualities_9get_fastq_str, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_5HTSeq_6_HTSeq_SequenceWithQualities[] = { {"qual", __pyx_getprop_5HTSeq_6_HTSeq_21SequenceWithQualities_qual, __pyx_setprop_5HTSeq_6_HTSeq_21SequenceWithQualities_qual, 0, 0}, {"qualstr", __pyx_getprop_5HTSeq_6_HTSeq_21SequenceWithQualities_qualstr, 0, 0, 0}, {"_qualstr", __pyx_getprop_5HTSeq_6_HTSeq_21SequenceWithQualities__qualstr, 0, 0, 0}, {"_qualstr_phred", __pyx_getprop_5HTSeq_6_HTSeq_21SequenceWithQualities__qualstr_phred, 0, 0, 0}, {"_qualscale", __pyx_getprop_5HTSeq_6_HTSeq_21SequenceWithQualities__qualscale, 0, 0, 0}, {"_qualarr", __pyx_getprop_5HTSeq_6_HTSeq_21SequenceWithQualities__qualarr, 0, 0, 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5HTSeq_6_HTSeq_SequenceWithQualities_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5HTSeq_6_HTSeq_SequenceWithQualities}, {Py_tp_repr, (void *)__pyx_pw_5HTSeq_6_HTSeq_21SequenceWithQualities_3__repr__}, {Py_sq_item, (void *)__pyx_sq_item_5HTSeq_6_HTSeq_SequenceWithQualities}, {Py_mp_subscript, (void *)__pyx_pw_5HTSeq_6_HTSeq_21SequenceWithQualities_5__getitem__}, {Py_tp_doc, (void *)PyDoc_STR("A Sequence with base-call quality scores.\n It now has property 'qual', an integer NumPy array of Sanger/Phred\n quality scores of the base calls.\n ")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5HTSeq_6_HTSeq_SequenceWithQualities}, {Py_tp_clear, (void *)__pyx_tp_clear_5HTSeq_6_HTSeq_SequenceWithQualities}, {Py_tp_methods, (void *)__pyx_methods_5HTSeq_6_HTSeq_SequenceWithQualities}, {Py_tp_getset, (void *)__pyx_getsets_5HTSeq_6_HTSeq_SequenceWithQualities}, {Py_tp_init, (void *)__pyx_pw_5HTSeq_6_HTSeq_21SequenceWithQualities_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5HTSeq_6_HTSeq_SequenceWithQualities}, {0, 0}, }; static PyType_Spec __pyx_type_5HTSeq_6_HTSeq_SequenceWithQualities_spec = { "HTSeq._HTSeq.SequenceWithQualities", sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5HTSeq_6_HTSeq_SequenceWithQualities_slots, }; #else static PySequenceMethods __pyx_tp_as_sequence_SequenceWithQualities = { #if CYTHON_COMPILING_IN_PYPY || 0 __pyx_pw_5HTSeq_6_HTSeq_8Sequence_9__len__, /*sq_length*/ #else 0, /*sq_length*/ #endif 0, /*sq_concat*/ 0, /*sq_repeat*/ __pyx_sq_item_5HTSeq_6_HTSeq_SequenceWithQualities, /*sq_item*/ 0, /*sq_slice*/ 0, /*sq_ass_item*/ 0, /*sq_ass_slice*/ 0, /*sq_contains*/ 0, /*sq_inplace_concat*/ 0, /*sq_inplace_repeat*/ }; static PyMappingMethods __pyx_tp_as_mapping_SequenceWithQualities = { #if CYTHON_COMPILING_IN_PYPY || 0 __pyx_pw_5HTSeq_6_HTSeq_8Sequence_9__len__, /*mp_length*/ #else 0, /*mp_length*/ #endif __pyx_pw_5HTSeq_6_HTSeq_21SequenceWithQualities_5__getitem__, /*mp_subscript*/ 0, /*mp_ass_subscript*/ }; static PyTypeObject __pyx_type_5HTSeq_6_HTSeq_SequenceWithQualities = { PyVarObject_HEAD_INIT(0, 0) "HTSeq._HTSeq.""SequenceWithQualities", /*tp_name*/ sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5HTSeq_6_HTSeq_SequenceWithQualities, /*tp_dealloc*/ 0, /*tp_vectorcall_offset*/ 0, /*tp_getattr*/ 0, /*tp_setattr*/ 0, /*tp_as_async*/ __pyx_pw_5HTSeq_6_HTSeq_21SequenceWithQualities_3__repr__, /*tp_repr*/ 0, /*tp_as_number*/ &__pyx_tp_as_sequence_SequenceWithQualities, /*tp_as_sequence*/ &__pyx_tp_as_mapping_SequenceWithQualities, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ #if CYTHON_COMPILING_IN_PYPY || 0 __pyx_pw_5HTSeq_6_HTSeq_8Sequence_5__str__, /*tp_str*/ #else 0, /*tp_str*/ #endif 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("A Sequence with base-call quality scores.\n It now has property 'qual', an integer NumPy array of Sanger/Phred\n quality scores of the base calls.\n "), /*tp_doc*/ __pyx_tp_traverse_5HTSeq_6_HTSeq_SequenceWithQualities, /*tp_traverse*/ __pyx_tp_clear_5HTSeq_6_HTSeq_SequenceWithQualities, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5HTSeq_6_HTSeq_SequenceWithQualities, /*tp_methods*/ 0, /*tp_members*/ __pyx_getsets_5HTSeq_6_HTSeq_SequenceWithQualities, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5HTSeq_6_HTSeq_21SequenceWithQualities_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5HTSeq_6_HTSeq_SequenceWithQualities, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #if !CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_Alignment(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *p; PyObject *o; o = __Pyx_AllocateExtensionType(t, 0); if (unlikely(!o)) return 0; p = ((struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *)o); p->_read = ((struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *)Py_None); Py_INCREF(Py_None); p->iv = ((struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5HTSeq_6_HTSeq_Alignment(PyObject *o) { struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *p = (struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely(__Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5HTSeq_6_HTSeq_Alignment) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->_read); Py_CLEAR(p->iv); PyTypeObject *tp = Py_TYPE(o); #if CYTHON_USE_TYPE_SLOTS (*tp->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(tp, Py_tp_free); if (tp_free) tp_free(o); } #endif #if CYTHON_USE_TYPE_SPECS Py_DECREF(tp); #endif } static int __pyx_tp_traverse_5HTSeq_6_HTSeq_Alignment(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *p = (struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *)o; { e = __Pyx_call_type_traverse(o, 1, v, a); if (e) return e; } if (p->_read) { e = (*v)(((PyObject *)p->_read), a); if (e) return e; } if (p->iv) { e = (*v)(((PyObject *)p->iv), a); if (e) return e; } return 0; } static int __pyx_tp_clear_5HTSeq_6_HTSeq_Alignment(PyObject *o) { PyObject* tmp; struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *p = (struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *)o; tmp = ((PyObject*)p->_read); p->_read = ((struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); tmp = ((PyObject*)p->iv); p->iv = ((struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_9Alignment_read(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_9Alignment_4read_1__get__(o); } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_9Alignment_paired_end(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_9Alignment_10paired_end_1__get__(o); } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_9Alignment_aligned(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_9Alignment_7aligned_1__get__(o); } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_9Alignment__read(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_9Alignment_5_read_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_9Alignment__read(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_9Alignment_5_read_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_9Alignment_5_read_5__del__(o); } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_9Alignment_iv(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_9Alignment_2iv_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_9Alignment_iv(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_9Alignment_2iv_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_9Alignment_2iv_5__del__(o); } } static PyMethodDef __pyx_methods_5HTSeq_6_HTSeq_Alignment[] = { {"__reduce_cython__", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_9Alignment_5__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"__setstate_cython__", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_9Alignment_7__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_5HTSeq_6_HTSeq_Alignment[] = { {"read", __pyx_getprop_5HTSeq_6_HTSeq_9Alignment_read, 0, 0, 0}, {"paired_end", __pyx_getprop_5HTSeq_6_HTSeq_9Alignment_paired_end, 0, 0, 0}, {"aligned", __pyx_getprop_5HTSeq_6_HTSeq_9Alignment_aligned, 0, PyDoc_STR("Returns True unless self.iv is None. The latter indicates that\n this record decribes a read for which no alignment was found.\n "), 0}, {"_read", __pyx_getprop_5HTSeq_6_HTSeq_9Alignment__read, __pyx_setprop_5HTSeq_6_HTSeq_9Alignment__read, 0, 0}, {"iv", __pyx_getprop_5HTSeq_6_HTSeq_9Alignment_iv, __pyx_setprop_5HTSeq_6_HTSeq_9Alignment_iv, 0, 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5HTSeq_6_HTSeq_Alignment_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5HTSeq_6_HTSeq_Alignment}, {Py_tp_repr, (void *)__pyx_pw_5HTSeq_6_HTSeq_9Alignment_3__repr__}, {Py_tp_doc, (void *)PyDoc_STR("An aligned read (typically from a BAM file).\n\n An alignment object can be defined in different ways but will always\n provide these attributes:\n read: a SequenceWithQualities object with the read\n aligned: whether the read is aligned\n iv: a GenomicInterval object with the alignment position\n ")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5HTSeq_6_HTSeq_Alignment}, {Py_tp_clear, (void *)__pyx_tp_clear_5HTSeq_6_HTSeq_Alignment}, {Py_tp_methods, (void *)__pyx_methods_5HTSeq_6_HTSeq_Alignment}, {Py_tp_getset, (void *)__pyx_getsets_5HTSeq_6_HTSeq_Alignment}, {Py_tp_init, (void *)__pyx_pw_5HTSeq_6_HTSeq_9Alignment_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5HTSeq_6_HTSeq_Alignment}, {0, 0}, }; static PyType_Spec __pyx_type_5HTSeq_6_HTSeq_Alignment_spec = { "HTSeq._HTSeq.Alignment", sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_Alignment), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5HTSeq_6_HTSeq_Alignment_slots, }; #else static PyTypeObject __pyx_type_5HTSeq_6_HTSeq_Alignment = { PyVarObject_HEAD_INIT(0, 0) "HTSeq._HTSeq.""Alignment", /*tp_name*/ sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_Alignment), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5HTSeq_6_HTSeq_Alignment, /*tp_dealloc*/ 0, /*tp_vectorcall_offset*/ 0, /*tp_getattr*/ 0, /*tp_setattr*/ 0, /*tp_as_async*/ __pyx_pw_5HTSeq_6_HTSeq_9Alignment_3__repr__, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("An aligned read (typically from a BAM file).\n\n An alignment object can be defined in different ways but will always\n provide these attributes:\n read: a SequenceWithQualities object with the read\n aligned: whether the read is aligned\n iv: a GenomicInterval object with the alignment position\n "), /*tp_doc*/ __pyx_tp_traverse_5HTSeq_6_HTSeq_Alignment, /*tp_traverse*/ __pyx_tp_clear_5HTSeq_6_HTSeq_Alignment, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5HTSeq_6_HTSeq_Alignment, /*tp_methods*/ 0, /*tp_members*/ __pyx_getsets_5HTSeq_6_HTSeq_Alignment, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5HTSeq_6_HTSeq_9Alignment_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5HTSeq_6_HTSeq_Alignment, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #if !CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal(PyTypeObject *t, PyObject *a, PyObject *k) { struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *p; PyObject *o = __pyx_tp_new_5HTSeq_6_HTSeq_Alignment(t, a, k); if (unlikely(!o)) return 0; p = ((struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *)o); p->read_as_aligned = ((struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *)Py_None); Py_INCREF(Py_None); p->_read_as_sequenced = ((struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal(PyObject *o) { struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *p = (struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely(__Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->read_as_aligned); Py_CLEAR(p->_read_as_sequenced); PyObject_GC_Track(o); __pyx_tp_dealloc_5HTSeq_6_HTSeq_Alignment(o); } static int __pyx_tp_traverse_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *p = (struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *)o; e = __pyx_tp_traverse_5HTSeq_6_HTSeq_Alignment(o, v, a); if (e) return e; if (p->read_as_aligned) { e = (*v)(((PyObject *)p->read_as_aligned), a); if (e) return e; } if (p->_read_as_sequenced) { e = (*v)(((PyObject *)p->_read_as_sequenced), a); if (e) return e; } return 0; } static int __pyx_tp_clear_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal(PyObject *o) { PyObject* tmp; struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *p = (struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *)o; __pyx_tp_clear_5HTSeq_6_HTSeq_Alignment(o); tmp = ((PyObject*)p->read_as_aligned); p->read_as_aligned = ((struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); tmp = ((PyObject*)p->_read_as_sequenced); p->_read_as_sequenced = ((struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_read(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_4read_1__get__(o); } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_read_as_aligned(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_15read_as_aligned_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_read_as_aligned(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_15read_as_aligned_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_15read_as_aligned_5__del__(o); } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal__read_as_sequenced(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_18_read_as_sequenced_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal__read_as_sequenced(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_18_read_as_sequenced_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_18_read_as_sequenced_5__del__(o); } } static PyMethodDef __pyx_methods_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal[] = { {"__reduce_cython__", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_3__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"__setstate_cython__", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_5__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal[] = { {"read", __pyx_getprop_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_read, 0, 0, 0}, {"read_as_aligned", __pyx_getprop_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_read_as_aligned, __pyx_setprop_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_read_as_aligned, 0, 0}, {"_read_as_sequenced", __pyx_getprop_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal__read_as_sequenced, __pyx_setprop_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal__read_as_sequenced, 0, 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal}, {Py_tp_doc, (void *)PyDoc_STR("Many aligners report the read's sequence in reverse-complemented form\n when it was mapped to the reverse strand. For such alignments, a\n daughter class of this one should be used.\n\n Then, the read is stored as aligned in the 'read_as_aligned' field,\n and get reverse-complemented back to the sequenced form when the 'read'\n attribute is sequenced.\n ")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal}, {Py_tp_clear, (void *)__pyx_tp_clear_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal}, {Py_tp_methods, (void *)__pyx_methods_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal}, {Py_tp_getset, (void *)__pyx_getsets_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal}, {Py_tp_init, (void *)__pyx_pw_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal}, {0, 0}, }; static PyType_Spec __pyx_type_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal_spec = { "HTSeq._HTSeq.AlignmentWithSequenceReversal", sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal_slots, }; #else static PyTypeObject __pyx_type_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal = { PyVarObject_HEAD_INIT(0, 0) "HTSeq._HTSeq.""AlignmentWithSequenceReversal", /*tp_name*/ sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal, /*tp_dealloc*/ 0, /*tp_vectorcall_offset*/ 0, /*tp_getattr*/ 0, /*tp_setattr*/ 0, /*tp_as_async*/ #if CYTHON_COMPILING_IN_PYPY || 0 __pyx_pw_5HTSeq_6_HTSeq_9Alignment_3__repr__, /*tp_repr*/ #else 0, /*tp_repr*/ #endif 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("Many aligners report the read's sequence in reverse-complemented form\n when it was mapped to the reverse strand. For such alignments, a\n daughter class of this one should be used.\n\n Then, the read is stored as aligned in the 'read_as_aligned' field,\n and get reverse-complemented back to the sequenced form when the 'read'\n attribute is sequenced.\n "), /*tp_doc*/ __pyx_tp_traverse_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal, /*tp_traverse*/ __pyx_tp_clear_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal, /*tp_methods*/ 0, /*tp_members*/ __pyx_getsets_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #if !CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_SAM_Alignment(PyTypeObject *t, PyObject *a, PyObject *k) { struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *p; PyObject *o = __pyx_tp_new_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal(t, a, k); if (unlikely(!o)) return 0; p = ((struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *)o); p->cigar = ((PyObject*)Py_None); Py_INCREF(Py_None); p->mate_start = ((struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition *)Py_None); Py_INCREF(Py_None); p->pe_which = ((PyObject*)Py_None); Py_INCREF(Py_None); p->original_sam_line = ((PyObject*)Py_None); Py_INCREF(Py_None); p->optional_fields = ((PyObject*)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5HTSeq_6_HTSeq_SAM_Alignment(PyObject *o) { struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *p = (struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely(__Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5HTSeq_6_HTSeq_SAM_Alignment) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->cigar); Py_CLEAR(p->mate_start); Py_CLEAR(p->pe_which); Py_CLEAR(p->original_sam_line); Py_CLEAR(p->optional_fields); PyObject_GC_Track(o); __pyx_tp_dealloc_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal(o); } static int __pyx_tp_traverse_5HTSeq_6_HTSeq_SAM_Alignment(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *p = (struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *)o; e = __pyx_tp_traverse_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal(o, v, a); if (e) return e; if (p->cigar) { e = (*v)(p->cigar, a); if (e) return e; } if (p->mate_start) { e = (*v)(((PyObject *)p->mate_start), a); if (e) return e; } if (p->optional_fields) { e = (*v)(p->optional_fields, a); if (e) return e; } return 0; } static int __pyx_tp_clear_5HTSeq_6_HTSeq_SAM_Alignment(PyObject *o) { PyObject* tmp; struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *p = (struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *)o; __pyx_tp_clear_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal(o); tmp = ((PyObject*)p->cigar); p->cigar = ((PyObject*)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); tmp = ((PyObject*)p->mate_start); p->mate_start = ((struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); tmp = ((PyObject*)p->optional_fields); p->optional_fields = ((PyObject*)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_flag(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_4flag_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_flag(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_4flag_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_paired_end(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_10paired_end_1__get__(o); } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_mate_aligned(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_12mate_aligned_1__get__(o); } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_cigar(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_5cigar_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_cigar(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_5cigar_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_5cigar_5__del__(o); } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_aQual(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_5aQual_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_aQual(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_5aQual_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_mate_start(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_10mate_start_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_mate_start(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_10mate_start_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_10mate_start_5__del__(o); } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_pe_which(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_8pe_which_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_pe_which(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_8pe_which_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_8pe_which_5__del__(o); } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_inferred_insert_size(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_20inferred_insert_size_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_inferred_insert_size(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_20inferred_insert_size_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_proper_pair(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_11proper_pair_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_proper_pair(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_11proper_pair_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_not_primary_alignment(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_21not_primary_alignment_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_not_primary_alignment(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_21not_primary_alignment_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_failed_platform_qc(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_18failed_platform_qc_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_failed_platform_qc(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_18failed_platform_qc_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_pcr_or_optical_duplicate(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_24pcr_or_optical_duplicate_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_pcr_or_optical_duplicate(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_24pcr_or_optical_duplicate_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_supplementary(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_13supplementary_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_supplementary(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_13supplementary_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_original_sam_line(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_17original_sam_line_1__get__(o); } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_optional_fields(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_15optional_fields_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_optional_fields(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_15optional_fields_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_15optional_fields_5__del__(o); } } static PyMethodDef __pyx_methods_5HTSeq_6_HTSeq_SAM_Alignment[] = { {"to_pysam_AlignedSegment", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_1to_pysam_AlignedSegment, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"to_pysam_AlignedRead", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_3to_pysam_AlignedRead, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"from_pysam_AlignedRead", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_5from_pysam_AlignedRead, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"from_pysam_AlignedSegment", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_7from_pysam_AlignedSegment, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"from_SAM_line", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_9from_SAM_line, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"get_sam_line", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_11get_sam_line, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"has_optional_field", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_13has_optional_field, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5HTSeq_6_HTSeq_13SAM_Alignment_12has_optional_field}, {"optional_field", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_15optional_field, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"raw_optional_fields", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_17raw_optional_fields, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"__reduce_cython__", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_19__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"__setstate_cython__", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_13SAM_Alignment_21__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_5HTSeq_6_HTSeq_SAM_Alignment[] = { {"flag", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_flag, __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_flag, 0, 0}, {"paired_end", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_paired_end, 0, 0, 0}, {"mate_aligned", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_mate_aligned, 0, 0, 0}, {"cigar", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_cigar, __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_cigar, 0, 0}, {"aQual", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_aQual, __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_aQual, 0, 0}, {"mate_start", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_mate_start, __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_mate_start, 0, 0}, {"pe_which", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_pe_which, __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_pe_which, 0, 0}, {"inferred_insert_size", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_inferred_insert_size, __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_inferred_insert_size, 0, 0}, {"proper_pair", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_proper_pair, __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_proper_pair, 0, 0}, {"not_primary_alignment", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_not_primary_alignment, __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_not_primary_alignment, 0, 0}, {"failed_platform_qc", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_failed_platform_qc, __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_failed_platform_qc, 0, 0}, {"pcr_or_optical_duplicate", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_pcr_or_optical_duplicate, __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_pcr_or_optical_duplicate, 0, 0}, {"supplementary", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_supplementary, __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_supplementary, 0, 0}, {"original_sam_line", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_original_sam_line, 0, 0, 0}, {"optional_fields", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_optional_fields, __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_optional_fields, 0, 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5HTSeq_6_HTSeq_SAM_Alignment_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5HTSeq_6_HTSeq_SAM_Alignment}, {Py_tp_doc, (void *)PyDoc_STR("When reading in a SAM file, objects of the class SAM_Alignment\n are returned. In addition to the 'read', 'iv' and 'aligned' fields (see\n Alignment class), the following fields are provided:\n - aQual: the alignment quality score\n - cigar: a list of CigarOperatio objects, describing the alignment\n - tags: the extra information tags [not yet implemented]\n ")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5HTSeq_6_HTSeq_SAM_Alignment}, {Py_tp_clear, (void *)__pyx_tp_clear_5HTSeq_6_HTSeq_SAM_Alignment}, {Py_tp_methods, (void *)__pyx_methods_5HTSeq_6_HTSeq_SAM_Alignment}, {Py_tp_getset, (void *)__pyx_getsets_5HTSeq_6_HTSeq_SAM_Alignment}, {Py_tp_new, (void *)__pyx_tp_new_5HTSeq_6_HTSeq_SAM_Alignment}, {0, 0}, }; static PyType_Spec __pyx_type_5HTSeq_6_HTSeq_SAM_Alignment_spec = { "HTSeq._HTSeq.SAM_Alignment", sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5HTSeq_6_HTSeq_SAM_Alignment_slots, }; #else static PyTypeObject __pyx_type_5HTSeq_6_HTSeq_SAM_Alignment = { PyVarObject_HEAD_INIT(0, 0) "HTSeq._HTSeq.""SAM_Alignment", /*tp_name*/ sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5HTSeq_6_HTSeq_SAM_Alignment, /*tp_dealloc*/ 0, /*tp_vectorcall_offset*/ 0, /*tp_getattr*/ 0, /*tp_setattr*/ 0, /*tp_as_async*/ #if CYTHON_COMPILING_IN_PYPY || 0 __pyx_pw_5HTSeq_6_HTSeq_9Alignment_3__repr__, /*tp_repr*/ #else 0, /*tp_repr*/ #endif 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("When reading in a SAM file, objects of the class SAM_Alignment\n are returned. In addition to the 'read', 'iv' and 'aligned' fields (see\n Alignment class), the following fields are provided:\n - aQual: the alignment quality score\n - cigar: a list of CigarOperatio objects, describing the alignment\n - tags: the extra information tags [not yet implemented]\n "), /*tp_doc*/ __pyx_tp_traverse_5HTSeq_6_HTSeq_SAM_Alignment, /*tp_traverse*/ __pyx_tp_clear_5HTSeq_6_HTSeq_SAM_Alignment, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5HTSeq_6_HTSeq_SAM_Alignment, /*tp_methods*/ 0, /*tp_members*/ __pyx_getsets_5HTSeq_6_HTSeq_SAM_Alignment, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif #if CYTHON_COMPILING_IN_PYPY || 0 __pyx_pw_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_1__init__, /*tp_init*/ #else 0, /*tp_init*/ #endif 0, /*tp_alloc*/ __pyx_tp_new_5HTSeq_6_HTSeq_SAM_Alignment, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #if !CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_ChromVector(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *p; PyObject *o; o = __Pyx_AllocateExtensionType(t, 0); if (unlikely(!o)) return 0; p = ((struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *)o); p->array = Py_None; Py_INCREF(Py_None); p->iv = ((struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *)Py_None); Py_INCREF(Py_None); p->_storage = ((PyObject*)Py_None); Py_INCREF(Py_None); p->typecode = ((PyObject*)Py_None); Py_INCREF(Py_None); p->memmap_dir = ((PyObject*)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5HTSeq_6_HTSeq_ChromVector(PyObject *o) { struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *p = (struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely(__Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5HTSeq_6_HTSeq_ChromVector) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->array); Py_CLEAR(p->iv); Py_CLEAR(p->_storage); Py_CLEAR(p->typecode); Py_CLEAR(p->memmap_dir); PyTypeObject *tp = Py_TYPE(o); #if CYTHON_USE_TYPE_SLOTS (*tp->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(tp, Py_tp_free); if (tp_free) tp_free(o); } #endif #if CYTHON_USE_TYPE_SPECS Py_DECREF(tp); #endif } static int __pyx_tp_traverse_5HTSeq_6_HTSeq_ChromVector(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *p = (struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *)o; { e = __Pyx_call_type_traverse(o, 1, v, a); if (e) return e; } if (p->array) { e = (*v)(p->array, a); if (e) return e; } if (p->iv) { e = (*v)(((PyObject *)p->iv), a); if (e) return e; } return 0; } static int __pyx_tp_clear_5HTSeq_6_HTSeq_ChromVector(PyObject *o) { PyObject* tmp; struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *p = (struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *)o; tmp = ((PyObject*)p->array); p->array = Py_None; Py_INCREF(Py_None); Py_XDECREF(tmp); tmp = ((PyObject*)p->iv); p->iv = ((struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_sq_item_5HTSeq_6_HTSeq_ChromVector(PyObject *o, Py_ssize_t i) { PyObject *r; PyObject *x = PyLong_FromSsize_t(i); if(!x) return 0; #if CYTHON_USE_TYPE_SLOTS || (!CYTHON_USE_TYPE_SPECS && __PYX_LIMITED_VERSION_HEX < 0x030A0000) r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x); #else r = ((binaryfunc)PyType_GetSlot(Py_TYPE(o), Py_mp_subscript))(o, x); #endif Py_DECREF(x); return r; } static int __pyx_mp_ass_subscript_5HTSeq_6_HTSeq_ChromVector(PyObject *o, PyObject *i, PyObject *v) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_9__setitem__(o, i, v); } else { __Pyx_TypeName o_type_name; o_type_name = __Pyx_PyType_GetFullyQualifiedName(Py_TYPE(o)); PyErr_Format(PyExc_NotImplementedError, "Subscript deletion not supported by " __Pyx_FMT_TYPENAME, o_type_name); __Pyx_DECREF_TypeName(o_type_name); return -1; } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_11ChromVector_array(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_5array_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector_array(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_5array_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_5array_5__del__(o); } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_11ChromVector_iv(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_2iv_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector_iv(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_2iv_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_2iv_5__del__(o); } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_11ChromVector_offset(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_6offset_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector_offset(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_6offset_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_11ChromVector_is_vector_of_sets(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_17is_vector_of_sets_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector_is_vector_of_sets(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_17is_vector_of_sets_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_11ChromVector__storage(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_8_storage_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector__storage(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_8_storage_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_8_storage_5__del__(o); } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_11ChromVector_typecode(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_8typecode_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector_typecode(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_8typecode_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_8typecode_5__del__(o); } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_11ChromVector_memmap_dir(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_10memmap_dir_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector_memmap_dir(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_10memmap_dir_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_10memmap_dir_5__del__(o); } } static PyMethodDef __pyx_methods_5HTSeq_6_HTSeq_ChromVector[] = { {"create", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_11ChromVector_1create, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5HTSeq_6_HTSeq_11ChromVector_create}, {"_create_view", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_11ChromVector_3_create_view, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"extend_to_include", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_11ChromVector_5extend_to_include, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"values", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_11ChromVector_15values, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"steps", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_11ChromVector_17steps, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"apply", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_11ChromVector_19apply, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"__reduce__", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_11ChromVector_23__reduce__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_5HTSeq_6_HTSeq_ChromVector[] = { {"array", __pyx_getprop_5HTSeq_6_HTSeq_11ChromVector_array, __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector_array, 0, 0}, {"iv", __pyx_getprop_5HTSeq_6_HTSeq_11ChromVector_iv, __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector_iv, 0, 0}, {"offset", __pyx_getprop_5HTSeq_6_HTSeq_11ChromVector_offset, __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector_offset, 0, 0}, {"is_vector_of_sets", __pyx_getprop_5HTSeq_6_HTSeq_11ChromVector_is_vector_of_sets, __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector_is_vector_of_sets, 0, 0}, {"_storage", __pyx_getprop_5HTSeq_6_HTSeq_11ChromVector__storage, __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector__storage, 0, 0}, {"typecode", __pyx_getprop_5HTSeq_6_HTSeq_11ChromVector_typecode, __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector_typecode, 0, 0}, {"memmap_dir", __pyx_getprop_5HTSeq_6_HTSeq_11ChromVector_memmap_dir, __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector_memmap_dir, 0, 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5HTSeq_6_HTSeq_ChromVector_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5HTSeq_6_HTSeq_ChromVector}, {Py_tp_repr, (void *)__pyx_pw_5HTSeq_6_HTSeq_11ChromVector_21__repr__}, {Py_nb_inplace_add, (void *)__pyx_pw_5HTSeq_6_HTSeq_11ChromVector_11__iadd__}, {Py_sq_item, (void *)__pyx_sq_item_5HTSeq_6_HTSeq_ChromVector}, {Py_mp_subscript, (void *)__pyx_pw_5HTSeq_6_HTSeq_11ChromVector_7__getitem__}, {Py_mp_ass_subscript, (void *)__pyx_mp_ass_subscript_5HTSeq_6_HTSeq_ChromVector}, {Py_tp_doc, (void *)PyDoc_STR("Counting vector covering a chromosome.\n\n This class supports three types of storage:\n 1. 'ndarray': Use a dense 1D numpy array\n 2. 'memmap': Use numpy memory maps on disk for large arrays\n 3. 'step': Use a StepVector\n ")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5HTSeq_6_HTSeq_ChromVector}, {Py_tp_clear, (void *)__pyx_tp_clear_5HTSeq_6_HTSeq_ChromVector}, {Py_tp_iter, (void *)__pyx_pw_5HTSeq_6_HTSeq_11ChromVector_13__iter__}, {Py_tp_methods, (void *)__pyx_methods_5HTSeq_6_HTSeq_ChromVector}, {Py_tp_getset, (void *)__pyx_getsets_5HTSeq_6_HTSeq_ChromVector}, {Py_tp_new, (void *)__pyx_tp_new_5HTSeq_6_HTSeq_ChromVector}, {0, 0}, }; static PyType_Spec __pyx_type_5HTSeq_6_HTSeq_ChromVector_spec = { "HTSeq._HTSeq.ChromVector", sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5HTSeq_6_HTSeq_ChromVector_slots, }; #else static PyNumberMethods __pyx_tp_as_number_ChromVector = { 0, /*nb_add*/ 0, /*nb_subtract*/ 0, /*nb_multiply*/ 0, /*nb_remainder*/ 0, /*nb_divmod*/ 0, /*nb_power*/ 0, /*nb_negative*/ 0, /*nb_positive*/ 0, /*nb_absolute*/ 0, /*nb_bool*/ 0, /*nb_invert*/ 0, /*nb_lshift*/ 0, /*nb_rshift*/ 0, /*nb_and*/ 0, /*nb_xor*/ 0, /*nb_or*/ 0, /*nb_int*/ 0, /*nb_long (reserved)*/ 0, /*nb_float*/ __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_11__iadd__, /*nb_inplace_add*/ 0, /*nb_inplace_subtract*/ 0, /*nb_inplace_multiply*/ 0, /*nb_inplace_remainder*/ 0, /*nb_inplace_power*/ 0, /*nb_inplace_lshift*/ 0, /*nb_inplace_rshift*/ 0, /*nb_inplace_and*/ 0, /*nb_inplace_xor*/ 0, /*nb_inplace_or*/ 0, /*nb_floor_divide*/ 0, /*nb_true_divide*/ 0, /*nb_inplace_floor_divide*/ 0, /*nb_inplace_true_divide*/ 0, /*nb_index*/ 0, /*nb_matrix_multiply*/ 0, /*nb_inplace_matrix_multiply*/ }; static PySequenceMethods __pyx_tp_as_sequence_ChromVector = { 0, /*sq_length*/ 0, /*sq_concat*/ 0, /*sq_repeat*/ __pyx_sq_item_5HTSeq_6_HTSeq_ChromVector, /*sq_item*/ 0, /*sq_slice*/ 0, /*sq_ass_item*/ 0, /*sq_ass_slice*/ 0, /*sq_contains*/ 0, /*sq_inplace_concat*/ 0, /*sq_inplace_repeat*/ }; static PyMappingMethods __pyx_tp_as_mapping_ChromVector = { 0, /*mp_length*/ __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_7__getitem__, /*mp_subscript*/ __pyx_mp_ass_subscript_5HTSeq_6_HTSeq_ChromVector, /*mp_ass_subscript*/ }; static PyTypeObject __pyx_type_5HTSeq_6_HTSeq_ChromVector = { PyVarObject_HEAD_INIT(0, 0) "HTSeq._HTSeq.""ChromVector", /*tp_name*/ sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5HTSeq_6_HTSeq_ChromVector, /*tp_dealloc*/ 0, /*tp_vectorcall_offset*/ 0, /*tp_getattr*/ 0, /*tp_setattr*/ 0, /*tp_as_async*/ __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_21__repr__, /*tp_repr*/ &__pyx_tp_as_number_ChromVector, /*tp_as_number*/ &__pyx_tp_as_sequence_ChromVector, /*tp_as_sequence*/ &__pyx_tp_as_mapping_ChromVector, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("Counting vector covering a chromosome.\n\n This class supports three types of storage:\n 1. 'ndarray': Use a dense 1D numpy array\n 2. 'memmap': Use numpy memory maps on disk for large arrays\n 3. 'step': Use a StepVector\n "), /*tp_doc*/ __pyx_tp_traverse_5HTSeq_6_HTSeq_ChromVector, /*tp_traverse*/ __pyx_tp_clear_5HTSeq_6_HTSeq_ChromVector, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ __pyx_pw_5HTSeq_6_HTSeq_11ChromVector_13__iter__, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5HTSeq_6_HTSeq_ChromVector, /*tp_methods*/ 0, /*tp_members*/ __pyx_getsets_5HTSeq_6_HTSeq_ChromVector, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5HTSeq_6_HTSeq_ChromVector, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #if !CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_GenomicArray(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *p; PyObject *o; o = __Pyx_AllocateExtensionType(t, 0); if (unlikely(!o)) return 0; p = ((struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *)o); p->chrom_vectors = ((PyObject*)Py_None); Py_INCREF(Py_None); p->typecode = ((PyObject*)Py_None); Py_INCREF(Py_None); p->auto_add_chroms = ((PyObject*)Py_None); Py_INCREF(Py_None); p->storage = ((PyObject*)Py_None); Py_INCREF(Py_None); p->memmap_dir = ((PyObject*)Py_None); Py_INCREF(Py_None); p->header = ((PyObject*)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5HTSeq_6_HTSeq_GenomicArray(PyObject *o) { struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *p = (struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely(__Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5HTSeq_6_HTSeq_GenomicArray) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->chrom_vectors); Py_CLEAR(p->typecode); Py_CLEAR(p->auto_add_chroms); Py_CLEAR(p->storage); Py_CLEAR(p->memmap_dir); Py_CLEAR(p->header); PyTypeObject *tp = Py_TYPE(o); #if CYTHON_USE_TYPE_SLOTS (*tp->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(tp, Py_tp_free); if (tp_free) tp_free(o); } #endif #if CYTHON_USE_TYPE_SPECS Py_DECREF(tp); #endif } static int __pyx_tp_traverse_5HTSeq_6_HTSeq_GenomicArray(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *p = (struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *)o; { e = __Pyx_call_type_traverse(o, 1, v, a); if (e) return e; } if (p->chrom_vectors) { e = (*v)(p->chrom_vectors, a); if (e) return e; } return 0; } static int __pyx_tp_clear_5HTSeq_6_HTSeq_GenomicArray(PyObject *o) { PyObject* tmp; struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *p = (struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *)o; tmp = ((PyObject*)p->chrom_vectors); p->chrom_vectors = ((PyObject*)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_sq_item_5HTSeq_6_HTSeq_GenomicArray(PyObject *o, Py_ssize_t i) { PyObject *r; PyObject *x = PyLong_FromSsize_t(i); if(!x) return 0; #if CYTHON_USE_TYPE_SLOTS || (!CYTHON_USE_TYPE_SPECS && __PYX_LIMITED_VERSION_HEX < 0x030A0000) r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x); #else r = ((binaryfunc)PyType_GetSlot(Py_TYPE(o), Py_mp_subscript))(o, x); #endif Py_DECREF(x); return r; } static int __pyx_mp_ass_subscript_5HTSeq_6_HTSeq_GenomicArray(PyObject *o, PyObject *i, PyObject *v) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_5__setitem__(o, i, v); } else { __Pyx_TypeName o_type_name; o_type_name = __Pyx_PyType_GetFullyQualifiedName(Py_TYPE(o)); PyErr_Format(PyExc_NotImplementedError, "Subscript deletion not supported by " __Pyx_FMT_TYPENAME, o_type_name); __Pyx_DECREF_TypeName(o_type_name); return -1; } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_chrom_vectors(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_13chrom_vectors_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_12GenomicArray_chrom_vectors(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_13chrom_vectors_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_13chrom_vectors_5__del__(o); } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_stranded(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_8stranded_1__get__(o); } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_typecode(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_8typecode_1__get__(o); } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_auto_add_chroms(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_15auto_add_chroms_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_12GenomicArray_auto_add_chroms(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_15auto_add_chroms_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_15auto_add_chroms_5__del__(o); } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_storage(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_7storage_1__get__(o); } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_memmap_dir(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_10memmap_dir_1__get__(o); } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_header(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_6header_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_12GenomicArray_header(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_6header_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_6header_5__del__(o); } } static PyMethodDef __pyx_methods_5HTSeq_6_HTSeq_GenomicArray[] = { {"add_chrom", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_7add_chrom, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"__reduce__", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_9__reduce__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"write_bedgraph_file", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_13write_bedgraph_file, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5HTSeq_6_HTSeq_12GenomicArray_12write_bedgraph_file}, {"from_bedgraph_file", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_15from_bedgraph_file, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5HTSeq_6_HTSeq_12GenomicArray_14from_bedgraph_file}, {"write_bigwig_file", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_17write_bigwig_file, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5HTSeq_6_HTSeq_12GenomicArray_16write_bigwig_file}, {"from_bigwig_file", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_19from_bigwig_file, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5HTSeq_6_HTSeq_12GenomicArray_18from_bigwig_file}, {"steps", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_21steps, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5HTSeq_6_HTSeq_12GenomicArray_20steps}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_5HTSeq_6_HTSeq_GenomicArray[] = { {"chrom_vectors", __pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_chrom_vectors, __pyx_setprop_5HTSeq_6_HTSeq_12GenomicArray_chrom_vectors, 0, 0}, {"stranded", __pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_stranded, 0, 0, 0}, {"typecode", __pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_typecode, 0, 0, 0}, {"auto_add_chroms", __pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_auto_add_chroms, __pyx_setprop_5HTSeq_6_HTSeq_12GenomicArray_auto_add_chroms, 0, 0}, {"storage", __pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_storage, 0, 0, 0}, {"memmap_dir", __pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_memmap_dir, 0, 0, 0}, {"header", __pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_header, __pyx_setprop_5HTSeq_6_HTSeq_12GenomicArray_header, 0, 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5HTSeq_6_HTSeq_GenomicArray_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5HTSeq_6_HTSeq_GenomicArray}, {Py_sq_item, (void *)__pyx_sq_item_5HTSeq_6_HTSeq_GenomicArray}, {Py_sq_contains, (void *)__pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_11__contains__}, {Py_mp_subscript, (void *)__pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_3__getitem__}, {Py_mp_ass_subscript, (void *)__pyx_mp_ass_subscript_5HTSeq_6_HTSeq_GenomicArray}, {Py_tp_doc, (void *)PyDoc_STR("Coverage vector including multiple chromosomes.\n\n This object is basically a collection of ChromVector, with the same options\n for storage:\n 1. 'ndarray': Use a dense 1D numpy array\n 2. 'memmap': Use numpy memory maps on disk for large arrays\n 3. 'step': Use a StepVector\n\n The class also supports autodiscovery of chromosomes if the 'step' storage\n method is used. In that case, chromosomes of at least sufficient size will\n be created whenever the data pushed into the GenomicArray refers to them.\n For instance, if you are computing plain read coverage along chromosomes,\n each read will inform the GenomicArray as of its chromosome and position:\n the GenomicArray will then create an appropriate ChromVector object of at\n least that size.\n ")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5HTSeq_6_HTSeq_GenomicArray}, {Py_tp_clear, (void *)__pyx_tp_clear_5HTSeq_6_HTSeq_GenomicArray}, {Py_tp_methods, (void *)__pyx_methods_5HTSeq_6_HTSeq_GenomicArray}, {Py_tp_getset, (void *)__pyx_getsets_5HTSeq_6_HTSeq_GenomicArray}, {Py_tp_init, (void *)__pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5HTSeq_6_HTSeq_GenomicArray}, {0, 0}, }; static PyType_Spec __pyx_type_5HTSeq_6_HTSeq_GenomicArray_spec = { "HTSeq._HTSeq.GenomicArray", sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5HTSeq_6_HTSeq_GenomicArray_slots, }; #else static PySequenceMethods __pyx_tp_as_sequence_GenomicArray = { 0, /*sq_length*/ 0, /*sq_concat*/ 0, /*sq_repeat*/ __pyx_sq_item_5HTSeq_6_HTSeq_GenomicArray, /*sq_item*/ 0, /*sq_slice*/ 0, /*sq_ass_item*/ 0, /*sq_ass_slice*/ __pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_11__contains__, /*sq_contains*/ 0, /*sq_inplace_concat*/ 0, /*sq_inplace_repeat*/ }; static PyMappingMethods __pyx_tp_as_mapping_GenomicArray = { 0, /*mp_length*/ __pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_3__getitem__, /*mp_subscript*/ __pyx_mp_ass_subscript_5HTSeq_6_HTSeq_GenomicArray, /*mp_ass_subscript*/ }; static PyTypeObject __pyx_type_5HTSeq_6_HTSeq_GenomicArray = { PyVarObject_HEAD_INIT(0, 0) "HTSeq._HTSeq.""GenomicArray", /*tp_name*/ sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5HTSeq_6_HTSeq_GenomicArray, /*tp_dealloc*/ 0, /*tp_vectorcall_offset*/ 0, /*tp_getattr*/ 0, /*tp_setattr*/ 0, /*tp_as_async*/ 0, /*tp_repr*/ 0, /*tp_as_number*/ &__pyx_tp_as_sequence_GenomicArray, /*tp_as_sequence*/ &__pyx_tp_as_mapping_GenomicArray, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("Coverage vector including multiple chromosomes.\n\n This object is basically a collection of ChromVector, with the same options\n for storage:\n 1. 'ndarray': Use a dense 1D numpy array\n 2. 'memmap': Use numpy memory maps on disk for large arrays\n 3. 'step': Use a StepVector\n\n The class also supports autodiscovery of chromosomes if the 'step' storage\n method is used. In that case, chromosomes of at least sufficient size will\n be created whenever the data pushed into the GenomicArray refers to them.\n For instance, if you are computing plain read coverage along chromosomes,\n each read will inform the GenomicArray as of its chromosome and position:\n the GenomicArray will then create an appropriate ChromVector object of at\n least that size.\n "), /*tp_doc*/ __pyx_tp_traverse_5HTSeq_6_HTSeq_GenomicArray, /*tp_traverse*/ __pyx_tp_clear_5HTSeq_6_HTSeq_GenomicArray, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5HTSeq_6_HTSeq_GenomicArray, /*tp_methods*/ 0, /*tp_members*/ __pyx_getsets_5HTSeq_6_HTSeq_GenomicArray, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5HTSeq_6_HTSeq_12GenomicArray_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5HTSeq_6_HTSeq_GenomicArray, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #if !CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_CigarOperation(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *p; PyObject *o; o = __Pyx_AllocateExtensionType(t, 0); if (unlikely(!o)) return 0; p = ((struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *)o); p->type = ((PyObject*)Py_None); Py_INCREF(Py_None); p->ref_iv = ((struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5HTSeq_6_HTSeq_CigarOperation(PyObject *o) { struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *p = (struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely(__Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5HTSeq_6_HTSeq_CigarOperation) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->type); Py_CLEAR(p->ref_iv); PyTypeObject *tp = Py_TYPE(o); #if CYTHON_USE_TYPE_SLOTS (*tp->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(tp, Py_tp_free); if (tp_free) tp_free(o); } #endif #if CYTHON_USE_TYPE_SPECS Py_DECREF(tp); #endif } static int __pyx_tp_traverse_5HTSeq_6_HTSeq_CigarOperation(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *p = (struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *)o; { e = __Pyx_call_type_traverse(o, 1, v, a); if (e) return e; } if (p->ref_iv) { e = (*v)(((PyObject *)p->ref_iv), a); if (e) return e; } return 0; } static int __pyx_tp_clear_5HTSeq_6_HTSeq_CigarOperation(PyObject *o) { PyObject* tmp; struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *p = (struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *)o; tmp = ((PyObject*)p->ref_iv); p->ref_iv = ((struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_14CigarOperation_type(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_14CigarOperation_4type_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_14CigarOperation_type(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_14CigarOperation_4type_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_14CigarOperation_4type_5__del__(o); } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_14CigarOperation_size(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_14CigarOperation_4size_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_14CigarOperation_size(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_14CigarOperation_4size_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_14CigarOperation_ref_iv(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_14CigarOperation_6ref_iv_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_14CigarOperation_ref_iv(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_14CigarOperation_6ref_iv_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_14CigarOperation_6ref_iv_5__del__(o); } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_14CigarOperation_query_from(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_14CigarOperation_10query_from_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_14CigarOperation_query_from(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_14CigarOperation_10query_from_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_14CigarOperation_query_to(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_14CigarOperation_8query_to_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_14CigarOperation_query_to(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_14CigarOperation_8query_to_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyMethodDef __pyx_methods_5HTSeq_6_HTSeq_CigarOperation[] = { {"check", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_14CigarOperation_5check, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"__reduce_cython__", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_14CigarOperation_7__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"__setstate_cython__", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_14CigarOperation_9__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_5HTSeq_6_HTSeq_CigarOperation[] = { {"type", __pyx_getprop_5HTSeq_6_HTSeq_14CigarOperation_type, __pyx_setprop_5HTSeq_6_HTSeq_14CigarOperation_type, 0, 0}, {"size", __pyx_getprop_5HTSeq_6_HTSeq_14CigarOperation_size, __pyx_setprop_5HTSeq_6_HTSeq_14CigarOperation_size, 0, 0}, {"ref_iv", __pyx_getprop_5HTSeq_6_HTSeq_14CigarOperation_ref_iv, __pyx_setprop_5HTSeq_6_HTSeq_14CigarOperation_ref_iv, 0, 0}, {"query_from", __pyx_getprop_5HTSeq_6_HTSeq_14CigarOperation_query_from, __pyx_setprop_5HTSeq_6_HTSeq_14CigarOperation_query_from, 0, 0}, {"query_to", __pyx_getprop_5HTSeq_6_HTSeq_14CigarOperation_query_to, __pyx_setprop_5HTSeq_6_HTSeq_14CigarOperation_query_to, 0, 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5HTSeq_6_HTSeq_CigarOperation_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5HTSeq_6_HTSeq_CigarOperation}, {Py_tp_repr, (void *)__pyx_pw_5HTSeq_6_HTSeq_14CigarOperation_3__repr__}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5HTSeq_6_HTSeq_CigarOperation}, {Py_tp_clear, (void *)__pyx_tp_clear_5HTSeq_6_HTSeq_CigarOperation}, {Py_tp_methods, (void *)__pyx_methods_5HTSeq_6_HTSeq_CigarOperation}, {Py_tp_getset, (void *)__pyx_getsets_5HTSeq_6_HTSeq_CigarOperation}, {Py_tp_init, (void *)__pyx_pw_5HTSeq_6_HTSeq_14CigarOperation_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5HTSeq_6_HTSeq_CigarOperation}, {0, 0}, }; static PyType_Spec __pyx_type_5HTSeq_6_HTSeq_CigarOperation_spec = { "HTSeq._HTSeq.CigarOperation", sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5HTSeq_6_HTSeq_CigarOperation_slots, }; #else static PyTypeObject __pyx_type_5HTSeq_6_HTSeq_CigarOperation = { PyVarObject_HEAD_INIT(0, 0) "HTSeq._HTSeq.""CigarOperation", /*tp_name*/ sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5HTSeq_6_HTSeq_CigarOperation, /*tp_dealloc*/ 0, /*tp_vectorcall_offset*/ 0, /*tp_getattr*/ 0, /*tp_setattr*/ 0, /*tp_as_async*/ __pyx_pw_5HTSeq_6_HTSeq_14CigarOperation_3__repr__, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5HTSeq_6_HTSeq_CigarOperation, /*tp_traverse*/ __pyx_tp_clear_5HTSeq_6_HTSeq_CigarOperation, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5HTSeq_6_HTSeq_CigarOperation, /*tp_methods*/ 0, /*tp_members*/ __pyx_getsets_5HTSeq_6_HTSeq_CigarOperation, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5HTSeq_6_HTSeq_14CigarOperation_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5HTSeq_6_HTSeq_CigarOperation, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #if !CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_BowtieAlignment(PyTypeObject *t, PyObject *a, PyObject *k) { struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment *p; PyObject *o = __pyx_tp_new_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal(t, a, k); if (unlikely(!o)) return 0; p = ((struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment *)o); p->reserved = ((PyObject*)Py_None); Py_INCREF(Py_None); p->substitutions = ((PyObject*)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5HTSeq_6_HTSeq_BowtieAlignment(PyObject *o) { struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment *p = (struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely(__Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5HTSeq_6_HTSeq_BowtieAlignment) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->reserved); Py_CLEAR(p->substitutions); PyObject_GC_Track(o); __pyx_tp_dealloc_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal(o); } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15BowtieAlignment_reserved(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_15BowtieAlignment_8reserved_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_15BowtieAlignment_reserved(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_15BowtieAlignment_8reserved_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_15BowtieAlignment_8reserved_5__del__(o); } } static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15BowtieAlignment_substitutions(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5HTSeq_6_HTSeq_15BowtieAlignment_13substitutions_1__get__(o); } static int __pyx_setprop_5HTSeq_6_HTSeq_15BowtieAlignment_substitutions(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5HTSeq_6_HTSeq_15BowtieAlignment_13substitutions_3__set__(o, v); } else { return __pyx_pw_5HTSeq_6_HTSeq_15BowtieAlignment_13substitutions_5__del__(o); } } static PyMethodDef __pyx_methods_5HTSeq_6_HTSeq_BowtieAlignment[] = { {"__reduce_cython__", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_15BowtieAlignment_3__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {"__setstate_cython__", (PyCFunction)(void(*)(void))(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5HTSeq_6_HTSeq_15BowtieAlignment_5__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_5HTSeq_6_HTSeq_BowtieAlignment[] = { {"reserved", __pyx_getprop_5HTSeq_6_HTSeq_15BowtieAlignment_reserved, __pyx_setprop_5HTSeq_6_HTSeq_15BowtieAlignment_reserved, 0, 0}, {"substitutions", __pyx_getprop_5HTSeq_6_HTSeq_15BowtieAlignment_substitutions, __pyx_setprop_5HTSeq_6_HTSeq_15BowtieAlignment_substitutions, 0, 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5HTSeq_6_HTSeq_BowtieAlignment_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5HTSeq_6_HTSeq_BowtieAlignment}, {Py_tp_doc, (void *)PyDoc_STR("When reading in a Bowtie file, objects of the class BowtieAlignment\n are returned. In addition to the 'read' and 'iv' fields (see Alignment\n class), the fields 'reserved' and 'substitutions' are provided. These\n contain the content of the respective columns of the Bowtie output\n\n [A parser for the substitutions field will be added soon.]\n ")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal}, {Py_tp_clear, (void *)__pyx_tp_clear_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal}, {Py_tp_methods, (void *)__pyx_methods_5HTSeq_6_HTSeq_BowtieAlignment}, {Py_tp_getset, (void *)__pyx_getsets_5HTSeq_6_HTSeq_BowtieAlignment}, {Py_tp_init, (void *)__pyx_pw_5HTSeq_6_HTSeq_15BowtieAlignment_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5HTSeq_6_HTSeq_BowtieAlignment}, {0, 0}, }; static PyType_Spec __pyx_type_5HTSeq_6_HTSeq_BowtieAlignment_spec = { "HTSeq._HTSeq.BowtieAlignment", sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5HTSeq_6_HTSeq_BowtieAlignment_slots, }; #else static PyTypeObject __pyx_type_5HTSeq_6_HTSeq_BowtieAlignment = { PyVarObject_HEAD_INIT(0, 0) "HTSeq._HTSeq.""BowtieAlignment", /*tp_name*/ sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5HTSeq_6_HTSeq_BowtieAlignment, /*tp_dealloc*/ 0, /*tp_vectorcall_offset*/ 0, /*tp_getattr*/ 0, /*tp_setattr*/ 0, /*tp_as_async*/ #if CYTHON_COMPILING_IN_PYPY || 0 __pyx_pw_5HTSeq_6_HTSeq_9Alignment_3__repr__, /*tp_repr*/ #else 0, /*tp_repr*/ #endif 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("When reading in a Bowtie file, objects of the class BowtieAlignment\n are returned. In addition to the 'read' and 'iv' fields (see Alignment\n class), the fields 'reserved' and 'substitutions' are provided. These\n contain the content of the respective columns of the Bowtie output\n\n [A parser for the substitutions field will be added soon.]\n "), /*tp_doc*/ __pyx_tp_traverse_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal, /*tp_traverse*/ __pyx_tp_clear_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5HTSeq_6_HTSeq_BowtieAlignment, /*tp_methods*/ 0, /*tp_members*/ __pyx_getsets_5HTSeq_6_HTSeq_BowtieAlignment, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5HTSeq_6_HTSeq_15BowtieAlignment_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5HTSeq_6_HTSeq_BowtieAlignment, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #if !CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_mstate_global->__pyx_freecount_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__ > 0) & __PYX_CHECK_FINAL_TYPE_FOR_FREELISTS(t, __pyx_mstate_global->__pyx_ptype_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__, sizeof(struct __pyx_obj_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__)))) { o = (PyObject*)__pyx_mstate_global->__pyx_freelist_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__[--__pyx_mstate_global->__pyx_freecount_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__]; #if CYTHON_USE_TYPE_SPECS Py_DECREF(Py_TYPE(o)); #endif memset(o, 0, sizeof(struct __pyx_obj_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__)); #if CYTHON_COMPILING_IN_LIMITED_API (void) PyObject_Init(o, t); #else (void) PyObject_INIT(o, t); #endif PyObject_GC_Track(o); } else #endif { o = __Pyx_AllocateExtensionType(t, 1); if (unlikely(!o)) return 0; } return o; } static void __pyx_tp_dealloc_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__(PyObject *o) { struct __pyx_obj_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__ *p = (struct __pyx_obj_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__ *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely(__Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_value); #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_mstate_global->__pyx_freecount_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__ < 8) & __PYX_CHECK_FINAL_TYPE_FOR_FREELISTS(Py_TYPE(o), __pyx_mstate_global->__pyx_ptype_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__, sizeof(struct __pyx_obj_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__)))) { __pyx_mstate_global->__pyx_freelist_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__[__pyx_mstate_global->__pyx_freecount_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__++] = ((struct __pyx_obj_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__ *)o); 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__pyx_mstate->__pyx_string_tab; Py_ssize_t pos = 0; for (int i = 0; i < 535; i++) { Py_ssize_t bytes_length = index[i].length; PyObject *string = PyUnicode_DecodeUTF8(bytes + pos, bytes_length, NULL); if (likely(string) && i >= 120) PyUnicode_InternInPlace(&string); if (unlikely(!string)) { Py_XDECREF(data); __PYX_ERR(0, 1, __pyx_L1_error) } stringtab[i] = string; pos += bytes_length; } for (int i = 535; i < 615; i++) { Py_ssize_t bytes_length = index[i].length; PyObject *string = PyBytes_FromStringAndSize(bytes + pos, bytes_length); stringtab[i] = string; pos += bytes_length; if (unlikely(!string)) { Py_XDECREF(data); __PYX_ERR(0, 1, __pyx_L1_error) } } Py_XDECREF(data); for (Py_ssize_t i = 0; i < 615; i++) { if (unlikely(PyObject_Hash(stringtab[i]) == -1)) { __PYX_ERR(0, 1, __pyx_L1_error) } } #if CYTHON_IMMORTAL_CONSTANTS { PyObject **table = stringtab + 535; for (Py_ssize_t i=0; i<80; ++i) { #if CYTHON_COMPILING_IN_CPYTHON_FREETHREADING #if PY_VERSION_HEX < 0x030E0000 if (_Py_IsOwnedByCurrentThread(table[i]) && Py_REFCNT(table[i]) == 1) #else if (PyUnstable_Object_IsUniquelyReferenced(table[i])) #endif { Py_SET_REFCNT(table[i], _Py_IMMORTAL_REFCNT_LOCAL); } #else Py_SET_REFCNT(table[i], _Py_IMMORTAL_INITIAL_REFCNT); #endif } } #endif } { PyObject **numbertab = __pyx_mstate->__pyx_number_tab; double const c_constants[] = {0.}; for (int i = 0; i < 1; i++) { numbertab[i] = PyFloat_FromDouble(c_constants[i]); if (unlikely(!numbertab[i])) __PYX_ERR(0, 1, __pyx_L1_error) } } { PyObject **numbertab = __pyx_mstate->__pyx_number_tab + 1; int8_t const cint_constants_1[] = {0,-1,1,2,3,4,5,10,11,16,70}; int32_t const cint_constants_4[] = {1450081L,9874465L,240641895L,246267685L,260241271L}; for (int i = 0; i < 16; i++) { numbertab[i] = PyLong_FromLong((i < 11 ? cint_constants_1[i - 0] : cint_constants_4[i - 11])); if (unlikely(!numbertab[i])) __PYX_ERR(0, 1, __pyx_L1_error) } } #if CYTHON_IMMORTAL_CONSTANTS { PyObject **table = __pyx_mstate->__pyx_number_tab; for (Py_ssize_t i=0; i<17; ++i) { #if CYTHON_COMPILING_IN_CPYTHON_FREETHREADING #if PY_VERSION_HEX < 0x030E0000 if (_Py_IsOwnedByCurrentThread(table[i]) && Py_REFCNT(table[i]) == 1) #else if (PyUnstable_Object_IsUniquelyReferenced(table[i])) #endif { Py_SET_REFCNT(table[i], _Py_IMMORTAL_REFCNT_LOCAL); } #else Py_SET_REFCNT(table[i], _Py_IMMORTAL_INITIAL_REFCNT); #endif } } #endif return 0; __pyx_L1_error:; return -1; } /* #### Code section: init_codeobjects ### */ typedef struct { unsigned int argcount : 3; unsigned int num_posonly_args : 1; unsigned int num_kwonly_args : 1; unsigned int nlocals : 5; unsigned int flags : 10; unsigned int first_line : 12; } __Pyx_PyCode_New_function_description; /* NewCodeObj.proto */ static PyObject* __Pyx_PyCode_New( const __Pyx_PyCode_New_function_description descr, PyObject * const *varnames, PyObject *filename, PyObject *funcname, PyObject *line_table, PyObject *tuple_dedup_map ); static int __Pyx_CreateCodeObjects(__pyx_mstatetype *__pyx_mstate) { PyObject* tuple_dedup_map = PyDict_New(); if (unlikely(!tuple_dedup_map)) return -1; { const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 557}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_x, __pyx_mstate->__pyx_n_u_y}; __pyx_mstate_global->__pyx_codeobj_tab[0] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_addval, __pyx_mstate->__pyx_kp_b_iso88591_A_AU_Qa_q, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[0])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {4, 0, 0, 5, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 975}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_bw, __pyx_mstate->__pyx_n_u_entries, __pyx_mstate->__pyx_n_u_bufsize, __pyx_mstate->__pyx_n_u_newentry, __pyx_mstate->__pyx_n_u_key}; __pyx_mstate_global->__pyx_codeobj_tab[1] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_write_with_buffer, __pyx_mstate->__pyx_kp_b_iso88591_8_9G1_q_q_G1HAQ_3ay_1_k_q_WAYgW, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[1])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 1, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 78}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self}; __pyx_mstate_global->__pyx_codeobj_tab[2] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_reduce, __pyx_mstate->__pyx_kp_b_iso88591_A_XT_Q_Q, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[2])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 3, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 82}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_constr, __pyx_mstate->__pyx_n_u_args}; __pyx_mstate_global->__pyx_codeobj_tab[3] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_copy_2, __pyx_mstate->__pyx_kp_b_iso88591_A_t_a_vRq, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[3])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 169}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_iv}; __pyx_mstate_global->__pyx_codeobj_tab[4] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_is_contained_in, __pyx_mstate->__pyx_kp_b_iso88591_A_3c_1_4wc_1_1_4y_t2XWDTTU_HG2Q, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[4])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 191}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_iv}; __pyx_mstate_global->__pyx_codeobj_tab[5] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_contains, __pyx_mstate->__pyx_kp_b_iso88591_A_3c_1_r, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[5])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 201}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_iv}; __pyx_mstate_global->__pyx_codeobj_tab[6] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_overlaps, __pyx_mstate->__pyx_kp_b_iso88591_A_3c_1_4wc_1_1_4xw_d_HGCSST_HG2Q, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[6])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 223}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_step}; __pyx_mstate_global->__pyx_codeobj_tab[7] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_range, __pyx_mstate->__pyx_kp_b_iso88591_2_4AV1, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[7])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 229}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_step}; __pyx_mstate_global->__pyx_codeobj_tab[8] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_range_d, __pyx_mstate->__pyx_kp_b_iso88591_4A_5QfA, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[8])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 235}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_iv}; __pyx_mstate_global->__pyx_codeobj_tab[9] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_extend_to_include, __pyx_mstate->__pyx_kp_b_iso88591_A_3c_1A_4wc_1_AQ_4xw_d_HGCSST_HG, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[9])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 1, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 247}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self}; __pyx_mstate_global->__pyx_codeobj_tab[10] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_copy, __pyx_mstate->__pyx_kp_b_iso88591_A_at84xt6_Q, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[10])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {4, 0, 0, 4, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 251}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_chrom, __pyx_mstate->__pyx_n_u_start_d, __pyx_mstate->__pyx_n_u_length, __pyx_mstate->__pyx_n_u_strand}; __pyx_mstate_global->__pyx_codeobj_tab[11] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_GenomicInterval_from_directional, __pyx_mstate->__pyx_kp_b_iso88591_SST_V1A_wc_awixr_awhb_r_HBc, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[11])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 1, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 303}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self}; __pyx_mstate_global->__pyx_codeobj_tab[12] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_reduce, __pyx_mstate->__pyx_kp_b_iso88591_A_XT_t1, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[12])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 1, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 306}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self}; __pyx_mstate_global->__pyx_codeobj_tab[13] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_copy, __pyx_mstate->__pyx_kp_b_iso88591_A_at84vT, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[13])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {5, 0, 0, 6, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 327}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_cls, __pyx_mstate->__pyx_n_u_iv, __pyx_mstate->__pyx_n_u_typecode, __pyx_mstate->__pyx_n_u_storage, __pyx_mstate->__pyx_n_u_memmap_dir, __pyx_mstate->__pyx_n_u_ncv}; __pyx_mstate_global->__pyx_codeobj_tab[14] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_create, __pyx_mstate->__pyx_kp_b_iso88591_ARS0_c_6_83a_y_1_9E_q_r_F_9E_q_r, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[14])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {3, 0, 0, 4, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 393}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_cls, __pyx_mstate->__pyx_n_u_vec, __pyx_mstate->__pyx_n_u_iv, __pyx_mstate->__pyx_n_u_v}; __pyx_mstate_global->__pyx_codeobj_tab[15] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_create_view, __pyx_mstate->__pyx_kp_b_iso88591_A_2XS_AQ_Cq_q_Q_3a_c_S_q, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[15])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 5, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 405}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_iv, __pyx_mstate->__pyx_n_u_length, __pyx_mstate->__pyx_n_u_startdiff, __pyx_mstate->__pyx_n_u_array}; __pyx_mstate_global->__pyx_codeobj_tab[16] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_extend_to_include, __pyx_mstate->__pyx_kp_b_iso88591_A_2XS_Cq_A_S_q_Cwb_C_Jd_Q_4z_A_t, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[16])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 1, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 568}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self}; __pyx_mstate_global->__pyx_codeobj_tab[17] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_values, __pyx_mstate->__pyx_kp_b_iso88591_A_t1D_at3gRt9D_5_a, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[17])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 1, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 571}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self}; __pyx_mstate_global->__pyx_codeobj_tab[18] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_steps, __pyx_mstate->__pyx_kp_b_iso88591_A_0, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[18])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 4, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 574}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_fun, __pyx_mstate->__pyx_n_u_iv, __pyx_mstate->__pyx_n_u_value}; __pyx_mstate_global->__pyx_codeobj_tab[19] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_apply, __pyx_mstate->__pyx_kp_b_iso88591_A_D_V1_ar_ir_a_c, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[19])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 1, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 582}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self}; __pyx_mstate_global->__pyx_codeobj_tab[20] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_reduce, __pyx_mstate->__pyx_kp_b_iso88591_A_t_c_q_HD_T_6J_a, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[20])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {5, 0, 0, 6, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 588}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_array, __pyx_mstate->__pyx_n_u_iv, __pyx_mstate->__pyx_n_u_offset, __pyx_mstate->__pyx_n_u_is_vector_of_sets, __pyx_mstate->__pyx_n_u_storage_2, __pyx_mstate->__pyx_n_u_cv}; __pyx_mstate_global->__pyx_codeobj_tab[21] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_ChromVector_unpickle, __pyx_mstate->__pyx_kp_b_iso88591_A_iq_fA_j_1_l_1, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[21])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {4, 0, 0, 5, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 767}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_chrom, __pyx_mstate->__pyx_n_u_length, __pyx_mstate->__pyx_n_u_start_index, __pyx_mstate->__pyx_n_u_iv}; __pyx_mstate_global->__pyx_codeobj_tab[22] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_add_chrom, __pyx_mstate->__pyx_kp_b_iso88591_c_q_7_S_S_81_4q_ay_j_avQa_7_4t1, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[22])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 1, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 790}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self}; __pyx_mstate_global->__pyx_codeobj_tab[23] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_reduce, __pyx_mstate->__pyx_kp_b_iso88591_A_Kt1, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[23])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {5, 0, 0, 10, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 800}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_file_or_filename, __pyx_mstate->__pyx_n_u_strand, __pyx_mstate->__pyx_n_u_track_options, __pyx_mstate->__pyx_n_u_separator, __pyx_mstate->__pyx_n_u_sep, __pyx_mstate->__pyx_n_u_f, __pyx_mstate->__pyx_n_u_chrom, __pyx_mstate->__pyx_n_u_iv, __pyx_mstate->__pyx_n_u_value}; __pyx_mstate_global->__pyx_codeobj_tab[24] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_write_bedgraph_file, __pyx_mstate->__pyx_kp_b_iso88591_A_a_D_Kt7_Q_AQ_4z_WHM_AQ_7_Q_A_q, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[24])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {4, 0, 0, 13, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 860}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_cls, __pyx_mstate->__pyx_n_u_file_or_filename, __pyx_mstate->__pyx_n_u_strand, __pyx_mstate->__pyx_n_u_typecode, __pyx_mstate->__pyx_n_u_f, __pyx_mstate->__pyx_n_u_header, __pyx_mstate->__pyx_n_u_line, __pyx_mstate->__pyx_n_u_array, __pyx_mstate->__pyx_n_u_chrom, __pyx_mstate->__pyx_n_u_start, __pyx_mstate->__pyx_n_u_end, __pyx_mstate->__pyx_n_u_value, __pyx_mstate->__pyx_n_u_iv}; __pyx_mstate_global->__pyx_codeobj_tab[25] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_from_bedgraph_file, __pyx_mstate->__pyx_kp_b_iso88591_A9Gq_7_Q_A_q_Q_4_1_gQa_gQ_Cq_1_r, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[25])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {3, 0, 0, 16, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 924}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_filename, __pyx_mstate->__pyx_n_u_strand, __pyx_mstate->__pyx_n_u_pyBigWig, __pyx_mstate->__pyx_n_u_bw, __pyx_mstate->__pyx_n_u_header, __pyx_mstate->__pyx_n_u_chrom, __pyx_mstate->__pyx_n_u_cv, __pyx_mstate->__pyx_n_u_end, __pyx_mstate->__pyx_n_u_entries, __pyx_mstate->__pyx_n_u_bufsize, __pyx_mstate->__pyx_n_u_write_with_buffer, __pyx_mstate->__pyx_n_u_write_with_buffer, __pyx_mstate->__pyx_n_u_iv, __pyx_mstate->__pyx_n_u_value, __pyx_mstate->__pyx_n_u_entry}; __pyx_mstate_global->__pyx_codeobj_tab[26] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_write_bigwig_file, __pyx_mstate->__pyx_kp_b_iso88591_A_Q_D_Kt7_Q_AQ_4z_WHM_AQ_U_XQ_Q, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[26])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {4, 0, 0, 15, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1003}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_cls, __pyx_mstate->__pyx_n_u_filename, __pyx_mstate->__pyx_n_u_strand, __pyx_mstate->__pyx_n_u_typecode, __pyx_mstate->__pyx_n_u_pyBigWig, __pyx_mstate->__pyx_n_u_BigWig_Reader, __pyx_mstate->__pyx_n_u_bw, __pyx_mstate->__pyx_n_u_chrom_dict, __pyx_mstate->__pyx_n_u_array, __pyx_mstate->__pyx_n_u_chrom, __pyx_mstate->__pyx_n_u_intervals, __pyx_mstate->__pyx_n_u_i, __pyx_mstate->__pyx_n_u_start, __pyx_mstate->__pyx_n_u_end, __pyx_mstate->__pyx_n_u_value}; __pyx_mstate_global->__pyx_codeobj_tab[27] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_from_bigwig_file, __pyx_mstate->__pyx_kp_b_iso88591_A_Q_Q_Qb_q_Cq_1_Bj_A_D_uJiq_r_A, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[27])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 1, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1058}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self}; __pyx_mstate_global->__pyx_codeobj_tab[28] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_steps, __pyx_mstate->__pyx_kp_b_iso88591_A_1, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[28])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {3, 0, 0, 4, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1071}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_stranded, __pyx_mstate->__pyx_n_u_typecode, __pyx_mstate->__pyx_n_u_chrom_vectors, __pyx_mstate->__pyx_n_u_ga}; __pyx_mstate_global->__pyx_codeobj_tab[29] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_GenomicArray_unpickle, __pyx_mstate->__pyx_kp_b_iso88591_Qd_A_q_1, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[29])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {0, 0, 0, 0, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1082}; PyObject* const varnames[] = {0}; __pyx_mstate_global->__pyx_codeobj_tab[30] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_make_translation_table_for_comp, __pyx_mstate->__pyx_kp_b_iso88591_5, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[30])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 1, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1089}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_seq}; __pyx_mstate_global->__pyx_codeobj_tab[31] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_reverse_complement, __pyx_mstate->__pyx_kp_b_iso88591_3d_Jaq, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[31])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1107}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_rename}; __pyx_mstate_global->__pyx_codeobj_tab[32] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_get_reverse_complement, __pyx_mstate->__pyx_kp_b_iso88591_A_1_81_4q_b_A_81_4q_A, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[32])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 1, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1134}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self}; __pyx_mstate_global->__pyx_codeobj_tab[33] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_getstate, __pyx_mstate->__pyx_kp_b_iso88591_A_t1_A_Q, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[33])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1139}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_state}; __pyx_mstate_global->__pyx_codeobj_tab[34] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_setstate, __pyx_mstate->__pyx_kp_b_iso88591_A_G5_HE_IU_1, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[34])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 1, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1144}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self}; __pyx_mstate_global->__pyx_codeobj_tab[35] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_reduce, __pyx_mstate->__pyx_kp_b_iso88591_A_M_V4xt, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[35])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {3, 0, 0, 4, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1147}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_fasta_file, __pyx_mstate->__pyx_n_u_characters_per_line, __pyx_mstate->__pyx_n_u_i}; __pyx_mstate_global->__pyx_codeobj_tab[36] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_write_to_fasta_file, __pyx_mstate->__pyx_kp_b_iso88591_B_4wgQ_fA_4wd_fAXRt1_s_fAT_WCr, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[36])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1169}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_count_array}; __pyx_mstate_global->__pyx_codeobj_tab[37] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_add_bases_to_count_array, __pyx_mstate->__pyx_kp_b_iso88591_A_B_c_a_Ql_3b_AQ_Ql_3b_AQ_t1_E_a, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[37])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {3, 0, 0, 3, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1199}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_pattern, __pyx_mstate->__pyx_n_u_mismatch_prop}; __pyx_mstate_global->__pyx_codeobj_tab[38] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_trim_left_end, __pyx_mstate->__pyx_kp_b_iso88591_VVW_Qd_QgQ_7_A_Q_Q_t1_wa_E_as_1, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[38])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {3, 0, 0, 3, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1223}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_pattern, __pyx_mstate->__pyx_n_u_mismatch_prop}; __pyx_mstate_global->__pyx_codeobj_tab[39] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_trim_right_end, __pyx_mstate->__pyx_kp_b_iso88591_WWX_Qd_QgQ_7_A_Q_Q_t1_wa_E_as_1, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[39])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1351}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_fastq_file}; __pyx_mstate_global->__pyx_codeobj_tab[40] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_write_to_fastq_file, __pyx_mstate->__pyx_kp_b_iso88591_A_7_6_d_fA_4wd_fAXRt1_T_2Q_XWCr, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[40])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 3, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1360}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_convert_to_phred, __pyx_mstate->__pyx_n_u_sio}; __pyx_mstate_global->__pyx_codeobj_tab[41] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_get_fastq_str, __pyx_mstate->__pyx_kp_b_iso88591_2_iy_a_s_1, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[41])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1365}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_rename}; __pyx_mstate_global->__pyx_codeobj_tab[42] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_get_reverse_complement, __pyx_mstate->__pyx_kp_b_iso88591_I_1_q_4q_b_A_IT_A_q_4q_A_IT_A_4, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[42])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1383}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_count_array}; __pyx_mstate_global->__pyx_codeobj_tab[43] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_add_qual_to_count_array, __pyx_mstate->__pyx_kp_b_iso88591_A_C_4z_A_q_A_Q_m1Kq_q_g_q_AQ_E_a, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[43])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {3, 0, 0, 3, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1407}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_pattern, __pyx_mstate->__pyx_n_u_max_mm_qual}; __pyx_mstate_global->__pyx_codeobj_tab[44] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_trim_left_end_with_quals, __pyx_mstate->__pyx_kp_b_iso88591_A_Qd_QgQ_7_A_Q_Q_t1_wa_4z_A_q_A, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[44])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {3, 0, 0, 3, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1435}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_pattern, __pyx_mstate->__pyx_n_u_max_mm_qual}; __pyx_mstate_global->__pyx_codeobj_tab[45] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_trim_right_end_with_quals, __pyx_mstate->__pyx_kp_b_iso88591_A_Qd_QgQ_7_A_Q_Q_t1_wa_4z_A_q_A_2, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[45])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 3, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1509}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_qlen, __pyx_mstate->__pyx_n_u_rlen}; __pyx_mstate_global->__pyx_codeobj_tab[46] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_check, __pyx_mstate->__pyx_kp_b_iso88591_A_Jb_A_G1_4vS_Ct6_D_4vS_uE_D_d_s, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[46])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 4, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_state, __pyx_mstate->__pyx_n_u_dict_2, __pyx_mstate->__pyx_n_u_use_setstate}; __pyx_mstate_global->__pyx_codeobj_tab[47] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_stringsource, __pyx_mstate->__pyx_n_u_reduce_cython, __pyx_mstate->__pyx_kp_b_iso88591_T_d_T_gT_G1F_a_vWE_Q_q_t87_s_fG, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[47])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 16}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_pyx_state}; __pyx_mstate_global->__pyx_codeobj_tab[48] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_stringsource, __pyx_mstate->__pyx_n_u_setstate_cython, __pyx_mstate->__pyx_kp_b_iso88591_AV1, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[48])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {4, 0, 0, 4, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1529}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_cigar_string, __pyx_mstate->__pyx_n_u_ref_left, __pyx_mstate->__pyx_n_u_chrom, __pyx_mstate->__pyx_n_u_strand}; __pyx_mstate_global->__pyx_codeobj_tab[49] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_parse_cigar, __pyx_mstate->__pyx_kp_b_iso88591_6m_RS_q_Cs_S_1M_2S_j_5Rq_U_3a_C, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[49])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {4, 0, 0, 4, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1547}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_cigar_pairs, __pyx_mstate->__pyx_n_u_ref_left, __pyx_mstate->__pyx_n_u_chrom, __pyx_mstate->__pyx_n_u_strand}; __pyx_mstate_global->__pyx_codeobj_tab[50] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_build_cigar_list, __pyx_mstate->__pyx_kp_b_iso88591_WX_1_1_ha_5_4s_s_c_c_wa_Q_fF_r, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[50])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 4, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_state, __pyx_mstate->__pyx_n_u_dict_2, __pyx_mstate->__pyx_n_u_use_setstate}; __pyx_mstate_global->__pyx_codeobj_tab[51] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_stringsource, __pyx_mstate->__pyx_n_u_reduce_cython, __pyx_mstate->__pyx_kp_b_iso88591_T_Q_G1F_a_vWE_Q_q_t7_c_T_q_awk, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[51])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 16}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_pyx_state}; __pyx_mstate_global->__pyx_codeobj_tab[52] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_stringsource, __pyx_mstate->__pyx_n_u_setstate_cython, __pyx_mstate->__pyx_kp_b_iso88591_q_a, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[52])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 4, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_state, __pyx_mstate->__pyx_n_u_dict_2, __pyx_mstate->__pyx_n_u_use_setstate}; __pyx_mstate_global->__pyx_codeobj_tab[53] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_stringsource, __pyx_mstate->__pyx_n_u_reduce_cython, __pyx_mstate->__pyx_kp_b_iso88591_T_2_e4q_G1F_a_vWE_Q_q_t7_c_5I_P, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[53])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 16}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_pyx_state}; __pyx_mstate_global->__pyx_codeobj_tab[54] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_stringsource, __pyx_mstate->__pyx_n_u_setstate_cython, __pyx_mstate->__pyx_kp_b_iso88591_1F, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[54])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 4, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_state, __pyx_mstate->__pyx_n_u_dict_2, __pyx_mstate->__pyx_n_u_use_setstate}; __pyx_mstate_global->__pyx_codeobj_tab[55] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_stringsource, __pyx_mstate->__pyx_n_u_reduce_cython, __pyx_mstate->__pyx_kp_b_iso88591_T_2_e4_QQUU_dde_G1F_a_vWE_Q_q_t, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[55])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 16}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_pyx_state}; __pyx_mstate_global->__pyx_codeobj_tab[56] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_stringsource, __pyx_mstate->__pyx_n_u_setstate_cython, __pyx_mstate->__pyx_kp_b_iso88591_QfA, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[56])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 5, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1717}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_sf, __pyx_mstate->__pyx_n_u_pysam, __pyx_mstate->__pyx_n_u_a, __pyx_mstate->__pyx_n_u_c}; __pyx_mstate_global->__pyx_codeobj_tab[57] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_to_pysam_AlignedSegment, __pyx_mstate->__pyx_kp_b_iso88591_A_wfA_E_4uHD_CuCt3hcQZZ_cczz_D_Y, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[57])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 5, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1749}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_sf, __pyx_mstate->__pyx_n_u_pysam, __pyx_mstate->__pyx_n_u_a, __pyx_mstate->__pyx_n_u_c}; __pyx_mstate_global->__pyx_codeobj_tab[58] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_to_pysam_AlignedRead, __pyx_mstate->__pyx_kp_b_iso88591_A_wfA_E_Q_E_U_e1_Q_Q_4q_Yb_1_81A, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[58])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {3, 0, 0, 10, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1781}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_cls, __pyx_mstate->__pyx_n_u_read, __pyx_mstate->__pyx_n_u_samfile, __pyx_mstate->__pyx_n_u_strand, __pyx_mstate->__pyx_n_u_chrom, __pyx_mstate->__pyx_n_u_iv, __pyx_mstate->__pyx_n_u_seq, __pyx_mstate->__pyx_n_u_a, __pyx_mstate->__pyx_n_u_code, __pyx_mstate->__pyx_n_u_length}; __pyx_mstate_global->__pyx_codeobj_tab[59] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_from_pysam_AlignedRead, __pyx_mstate->__pyx_kp_b_iso88591_A_Q_4t1_G9AT_F_gQ_D_c_t4vS_q_O7, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[59])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {3, 0, 0, 11, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1829}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_cls, __pyx_mstate->__pyx_n_u_read, __pyx_mstate->__pyx_n_u_samfile, __pyx_mstate->__pyx_n_u_strand, __pyx_mstate->__pyx_n_u_chrom, __pyx_mstate->__pyx_n_u_iv, __pyx_mstate->__pyx_n_u_query_sequence, __pyx_mstate->__pyx_n_u_seq, __pyx_mstate->__pyx_n_u_a, __pyx_mstate->__pyx_n_u_code, __pyx_mstate->__pyx_n_u_length}; __pyx_mstate_global->__pyx_codeobj_tab[60] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_from_pysam_AlignedSegment, __pyx_mstate->__pyx_kp_b_iso88591_A_Q_4t1_G9AT_A_5Q_Q_O3fD_s_Q_wa, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[60])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 23, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1891}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_cls, __pyx_mstate->__pyx_n_u_line, __pyx_mstate->__pyx_n_u_qname, __pyx_mstate->__pyx_n_u_flag, __pyx_mstate->__pyx_n_u_rname, __pyx_mstate->__pyx_n_u_pos, __pyx_mstate->__pyx_n_u_mapq, __pyx_mstate->__pyx_n_u_cigar, __pyx_mstate->__pyx_n_u_mrnm, __pyx_mstate->__pyx_n_u_mpos, __pyx_mstate->__pyx_n_u_isize, __pyx_mstate->__pyx_n_u_seq, __pyx_mstate->__pyx_n_u_qual, __pyx_mstate->__pyx_n_u_optional_fields, __pyx_mstate->__pyx_n_u_posint, __pyx_mstate->__pyx_n_u_flagint, __pyx_mstate->__pyx_n_u_strand, __pyx_mstate->__pyx_n_u_cigarlist, __pyx_mstate->__pyx_n_u_swq, __pyx_mstate->__pyx_n_u_fields, __pyx_mstate->__pyx_n_u_iv, __pyx_mstate->__pyx_n_u_alnmt, __pyx_mstate->__pyx_n_u_field}; __pyx_mstate_global->__pyx_codeobj_tab[61] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_from_SAM_line, __pyx_mstate->__pyx_kp_b_iso88591_A_WBfAQ_3axr_AQ_gU_vV1_hfARq_3fA, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[61])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 5, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1994}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_cigar, __pyx_mstate->__pyx_n_u_query_start, __pyx_mstate->__pyx_n_u_mate_start, __pyx_mstate->__pyx_n_u_cop}; __pyx_mstate_global->__pyx_codeobj_tab[62] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_get_sam_line, __pyx_mstate->__pyx_kp_b_iso88591_A_4q_a_4_7_Q_q_4wgQ_t1_AS_r_A_A, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[62])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 3, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 2029}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_tag, __pyx_mstate->__pyx_n_u_p}; __pyx_mstate_global->__pyx_codeobj_tab[63] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_has_optional_field, __pyx_mstate->__pyx_kp_b_iso88591_A_E_Q_q_Cq_q_q, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[63])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 4, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 2041}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_tag, __pyx_mstate->__pyx_n_u_res, __pyx_mstate->__pyx_n_u_p}; __pyx_mstate_global->__pyx_codeobj_tab[64] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_optional_field, __pyx_mstate->__pyx_kp_b_iso88591_A_ar_U_s_1Cs_3auCq_3ar_s_5_1_ha, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[64])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 4, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 2051}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_res, __pyx_mstate->__pyx_n_u_op, __pyx_mstate->__pyx_n_u_tc}; __pyx_mstate_global->__pyx_codeobj_tab[65] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_raw_optional_fields, __pyx_mstate->__pyx_kp_b_iso88591_A_a_F_a_r_Ks_3ar_c_1Bk_A_Q_1Bk_A, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[65])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 4, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 1}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_state, __pyx_mstate->__pyx_n_u_dict_2, __pyx_mstate->__pyx_n_u_use_setstate}; __pyx_mstate_global->__pyx_codeobj_tab[66] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_stringsource, __pyx_mstate->__pyx_n_u_reduce_cython, __pyx_mstate->__pyx_kp_b_iso88591_T_XT_d_hVZZoos_t_K_K_O_O_T_T_X, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[66])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 16}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_self, __pyx_mstate->__pyx_n_u_pyx_state}; __pyx_mstate_global->__pyx_codeobj_tab[67] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_stringsource, __pyx_mstate->__pyx_n_u_setstate_cython, __pyx_mstate->__pyx_kp_b_iso88591_1F_2, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[67])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {3, 0, 0, 3, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 2072}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_s_3, __pyx_mstate->__pyx_n_u_split, __pyx_mstate->__pyx_n_u_quote}; __pyx_mstate_global->__pyx_codeobj_tab[68] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_src_HTSeq__HTSeq_pyx, __pyx_mstate->__pyx_n_u_quotesafe_split, __pyx_mstate->__pyx_kp_b_iso88591_00B_1_a_Qa_Qa_s_7_Q_j_s_7_Q_j_Q, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[68])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {3, 0, 0, 4, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 4}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_pyx_type, __pyx_mstate->__pyx_n_u_pyx_checksum, __pyx_mstate->__pyx_n_u_pyx_state, __pyx_mstate->__pyx_n_u_pyx_result}; __pyx_mstate_global->__pyx_codeobj_tab[69] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_stringsource, __pyx_mstate->__pyx_n_u_pyx_unpickle_CigarOperation, __pyx_mstate->__pyx_kp_b_iso88591_q_0_kQR_7_0_1B_PQ_1, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[69])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {3, 0, 0, 4, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 4}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_pyx_type, __pyx_mstate->__pyx_n_u_pyx_checksum, __pyx_mstate->__pyx_n_u_pyx_state, __pyx_mstate->__pyx_n_u_pyx_result}; __pyx_mstate_global->__pyx_codeobj_tab[70] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_stringsource, __pyx_mstate->__pyx_n_u_pyx_unpickle_Alignment, __pyx_mstate->__pyx_kp_b_iso88591_q_0_kQR_9HAQ_7_1L_a_1, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[70])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {3, 0, 0, 4, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 4}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_pyx_type, __pyx_mstate->__pyx_n_u_pyx_checksum, __pyx_mstate->__pyx_n_u_pyx_state, __pyx_mstate->__pyx_n_u_pyx_result}; __pyx_mstate_global->__pyx_codeobj_tab[71] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_stringsource, __pyx_mstate->__pyx_n_u_pyx_unpickle_AlignmentWithSequ, __pyx_mstate->__pyx_kp_b_iso88591_q_0_kQR_0_7_q_nno_1, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[71])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {3, 0, 0, 4, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 4}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_pyx_type, __pyx_mstate->__pyx_n_u_pyx_checksum, __pyx_mstate->__pyx_n_u_pyx_state, __pyx_mstate->__pyx_n_u_pyx_result}; __pyx_mstate_global->__pyx_codeobj_tab[72] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_stringsource, __pyx_mstate->__pyx_n_u_pyx_unpickle_BowtieAlignment, __pyx_mstate->__pyx_kp_b_iso88591_q_0_kQR_1_7_1_2DNRS_1, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[72])) goto bad; } { const __Pyx_PyCode_New_function_description descr = {3, 0, 0, 4, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 4}; PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_pyx_type, __pyx_mstate->__pyx_n_u_pyx_checksum, __pyx_mstate->__pyx_n_u_pyx_state, __pyx_mstate->__pyx_n_u_pyx_result}; __pyx_mstate_global->__pyx_codeobj_tab[73] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_stringsource, __pyx_mstate->__pyx_n_u_pyx_unpickle_SAM_Alignment, __pyx_mstate->__pyx_kp_b_iso88591_q_0_kQR_7_q0_a_1, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[73])) goto bad; } Py_DECREF(tuple_dedup_map); return 0; bad: Py_DECREF(tuple_dedup_map); return -1; } /* #### Code section: init_globals ### */ static int __Pyx_InitGlobals(void) { /* PythonCompatibility.init */ if (likely(__Pyx_init_co_variables() == 0)); else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 1, __pyx_L1_error) /* CommonTypesMetaclass.init */ if (likely(__pyx_CommonTypesMetaclass_init(__pyx_m) == 0)); else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 1, __pyx_L1_error) /* CachedMethodType.init */ #if CYTHON_COMPILING_IN_LIMITED_API { PyObject *typesModule=NULL; typesModule = PyImport_ImportModule("types"); if (typesModule) { __pyx_mstate_global->__Pyx_CachedMethodType = PyObject_GetAttrString(typesModule, "MethodType"); Py_DECREF(typesModule); } } // error handling follows #endif if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 1, __pyx_L1_error) /* CythonFunctionShared.init */ if (likely(__pyx_CyFunction_init(__pyx_m) == 0)); else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 1, __pyx_L1_error) /* AssertionsEnabled.init */ if (likely(__Pyx_init_assertions_enabled() == 0)); 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To disable this * add the line * numpy._import_array */ #ifdef NPY_FEATURE_VERSION #ifndef NO_IMPORT_ARRAY if (unlikely(_import_array() == -1)) { PyErr_SetString(PyExc_ImportError, "numpy.core.multiarray failed to import " "(auto-generated because you didn't call 'numpy.import_array()' after cimporting numpy; " "use 'numpy._import_array' to disable if you are certain you don't need it)."); } #endif #endif if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 1, __pyx_L1_error) return 0; __pyx_L1_error:; return -1; } /* #### Code section: cleanup_globals ### */ /* #### Code section: cleanup_module ### */ /* #### Code section: main_method ### */ /* #### Code section: utility_code_pragmas ### */ #ifdef _MSC_VER #pragma warning( push ) /* Warning 4127: conditional expression is constant * Cython uses constant conditional expressions to allow in inline functions to be optimized at * compile-time, so this warning is not useful */ #pragma warning( disable : 4127 ) #endif /* #### Code section: utility_code_def ### */ /* --- Runtime support code --- */ /* Refnanny */ #if CYTHON_REFNANNY static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname) { PyObject *m = NULL, *p = NULL; void *r = NULL; m = PyImport_ImportModule(modname); if (!m) goto end; p = PyObject_GetAttrString(m, "RefNannyAPI"); if (!p) goto end; r = PyLong_AsVoidPtr(p); end: Py_XDECREF(p); Py_XDECREF(m); return (__Pyx_RefNannyAPIStruct *)r; } #endif /* PyErrExceptionMatches (used by PyObjectGetAttrStrNoError) */ #if CYTHON_FAST_THREAD_STATE static int __Pyx_PyErr_ExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) { Py_ssize_t i, n; n = PyTuple_GET_SIZE(tuple); for (i=0; i= 0x030C00A6 PyObject *current_exception = tstate->current_exception; if (unlikely(!current_exception)) return 0; exc_type = (PyObject*) Py_TYPE(current_exception); if (exc_type == err) return 1; #else exc_type = tstate->curexc_type; if (exc_type == err) return 1; if (unlikely(!exc_type)) return 0; #endif #if CYTHON_AVOID_BORROWED_REFS Py_INCREF(exc_type); #endif if (unlikely(PyTuple_Check(err))) { result = __Pyx_PyErr_ExceptionMatchesTuple(exc_type, err); } else { result = __Pyx_PyErr_GivenExceptionMatches(exc_type, err); } #if CYTHON_AVOID_BORROWED_REFS Py_DECREF(exc_type); #endif return result; } #endif /* PyErrFetchRestore (used by PyObjectGetAttrStrNoError) */ #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { #if PY_VERSION_HEX >= 0x030C00A6 PyObject *tmp_value; assert(type == NULL || (value != NULL && type == (PyObject*) Py_TYPE(value))); if (value) { #if CYTHON_COMPILING_IN_CPYTHON if (unlikely(((PyBaseExceptionObject*) value)->traceback != tb)) #endif PyException_SetTraceback(value, tb); } tmp_value = tstate->current_exception; tstate->current_exception = value; Py_XDECREF(tmp_value); Py_XDECREF(type); Py_XDECREF(tb); #else PyObject *tmp_type, *tmp_value, *tmp_tb; tmp_type = tstate->curexc_type; tmp_value = tstate->curexc_value; tmp_tb = tstate->curexc_traceback; tstate->curexc_type = type; tstate->curexc_value = value; tstate->curexc_traceback = tb; Py_XDECREF(tmp_type); Py_XDECREF(tmp_value); Py_XDECREF(tmp_tb); #endif } static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { #if PY_VERSION_HEX >= 0x030C00A6 PyObject* exc_value; exc_value = tstate->current_exception; tstate->current_exception = 0; *value = exc_value; *type = NULL; *tb = NULL; if (exc_value) { *type = (PyObject*) Py_TYPE(exc_value); Py_INCREF(*type); #if CYTHON_COMPILING_IN_CPYTHON *tb = ((PyBaseExceptionObject*) exc_value)->traceback; Py_XINCREF(*tb); #else *tb = PyException_GetTraceback(exc_value); #endif } #else *type = tstate->curexc_type; *value = tstate->curexc_value; *tb = tstate->curexc_traceback; tstate->curexc_type = 0; tstate->curexc_value = 0; tstate->curexc_traceback = 0; #endif } #endif /* PyObjectGetAttrStr (used by PyObjectGetAttrStrNoError) */ #if CYTHON_USE_TYPE_SLOTS static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) { PyTypeObject* tp = Py_TYPE(obj); if (likely(tp->tp_getattro)) return tp->tp_getattro(obj, attr_name); return PyObject_GetAttr(obj, attr_name); } #endif /* PyObjectGetAttrStrNoError (used by GetBuiltinName) */ #if __PYX_LIMITED_VERSION_HEX < 0x030d0000 static void __Pyx_PyObject_GetAttrStr_ClearAttributeError(void) { __Pyx_PyThreadState_declare __Pyx_PyThreadState_assign if (likely(__Pyx_PyErr_ExceptionMatches(PyExc_AttributeError))) __Pyx_PyErr_Clear(); } #endif static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStrNoError(PyObject* obj, PyObject* attr_name) { PyObject *result; #if __PYX_LIMITED_VERSION_HEX >= 0x030d0000 (void) PyObject_GetOptionalAttr(obj, attr_name, &result); return result; #else #if CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_TYPE_SLOTS PyTypeObject* tp = Py_TYPE(obj); if (likely(tp->tp_getattro == PyObject_GenericGetAttr)) { return _PyObject_GenericGetAttrWithDict(obj, attr_name, NULL, 1); } #endif result = __Pyx_PyObject_GetAttrStr(obj, attr_name); if (unlikely(!result)) { __Pyx_PyObject_GetAttrStr_ClearAttributeError(); } return result; #endif } /* GetBuiltinName */ static PyObject *__Pyx_GetBuiltinName(PyObject *name) { PyObject* result = __Pyx_PyObject_GetAttrStrNoError(__pyx_mstate_global->__pyx_b, name); if (unlikely(!result) && !PyErr_Occurred()) { PyErr_Format(PyExc_NameError, "name '%U' is not defined", name); } return result; } /* GetTopmostException (used by SaveResetException) */ #if CYTHON_USE_EXC_INFO_STACK && CYTHON_FAST_THREAD_STATE static _PyErr_StackItem * __Pyx_PyErr_GetTopmostException(PyThreadState *tstate) { _PyErr_StackItem *exc_info = tstate->exc_info; while ((exc_info->exc_value == NULL || exc_info->exc_value == Py_None) && exc_info->previous_item != NULL) { exc_info = exc_info->previous_item; } return exc_info; } #endif /* SaveResetException */ #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { #if CYTHON_USE_EXC_INFO_STACK && PY_VERSION_HEX >= 0x030B00a4 _PyErr_StackItem *exc_info = __Pyx_PyErr_GetTopmostException(tstate); PyObject *exc_value = exc_info->exc_value; if (exc_value == NULL || exc_value == Py_None) { *value = NULL; *type = NULL; *tb = NULL; } else { *value = exc_value; Py_INCREF(*value); *type = (PyObject*) Py_TYPE(exc_value); Py_INCREF(*type); *tb = PyException_GetTraceback(exc_value); } #elif CYTHON_USE_EXC_INFO_STACK _PyErr_StackItem *exc_info = __Pyx_PyErr_GetTopmostException(tstate); *type = exc_info->exc_type; *value = exc_info->exc_value; *tb = exc_info->exc_traceback; Py_XINCREF(*type); Py_XINCREF(*value); Py_XINCREF(*tb); #else *type = tstate->exc_type; *value = tstate->exc_value; *tb = tstate->exc_traceback; Py_XINCREF(*type); Py_XINCREF(*value); Py_XINCREF(*tb); #endif } static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { #if CYTHON_USE_EXC_INFO_STACK && PY_VERSION_HEX >= 0x030B00a4 _PyErr_StackItem *exc_info = tstate->exc_info; PyObject *tmp_value = exc_info->exc_value; exc_info->exc_value = value; Py_XDECREF(tmp_value); Py_XDECREF(type); Py_XDECREF(tb); #else PyObject *tmp_type, *tmp_value, *tmp_tb; #if CYTHON_USE_EXC_INFO_STACK _PyErr_StackItem *exc_info = tstate->exc_info; tmp_type = exc_info->exc_type; tmp_value = exc_info->exc_value; tmp_tb = exc_info->exc_traceback; exc_info->exc_type = type; exc_info->exc_value = value; exc_info->exc_traceback = tb; #else tmp_type = tstate->exc_type; tmp_value = tstate->exc_value; tmp_tb = tstate->exc_traceback; tstate->exc_type = type; tstate->exc_value = value; tstate->exc_traceback = tb; #endif Py_XDECREF(tmp_type); Py_XDECREF(tmp_value); Py_XDECREF(tmp_tb); #endif } #endif /* GetException */ #if CYTHON_FAST_THREAD_STATE static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) #else static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) #endif { PyObject *local_type = NULL, *local_value, *local_tb = NULL; #if CYTHON_FAST_THREAD_STATE PyObject *tmp_type, *tmp_value, *tmp_tb; #if PY_VERSION_HEX >= 0x030C0000 local_value = tstate->current_exception; tstate->current_exception = 0; #else local_type = tstate->curexc_type; local_value = tstate->curexc_value; local_tb = tstate->curexc_traceback; tstate->curexc_type = 0; tstate->curexc_value = 0; tstate->curexc_traceback = 0; #endif #elif __PYX_LIMITED_VERSION_HEX > 0x030C0000 local_value = PyErr_GetRaisedException(); #else PyErr_Fetch(&local_type, &local_value, &local_tb); #endif #if __PYX_LIMITED_VERSION_HEX > 0x030C0000 if (likely(local_value)) { local_type = (PyObject*) Py_TYPE(local_value); Py_INCREF(local_type); local_tb = PyException_GetTraceback(local_value); } #else PyErr_NormalizeException(&local_type, &local_value, &local_tb); #if CYTHON_FAST_THREAD_STATE if (unlikely(tstate->curexc_type)) #else if (unlikely(PyErr_Occurred())) #endif goto bad; if (local_tb) { if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0)) goto bad; } #endif // __PYX_LIMITED_VERSION_HEX > 0x030C0000 Py_XINCREF(local_tb); Py_XINCREF(local_type); Py_XINCREF(local_value); *type = local_type; *value = local_value; *tb = local_tb; #if CYTHON_FAST_THREAD_STATE #if CYTHON_USE_EXC_INFO_STACK { _PyErr_StackItem *exc_info = tstate->exc_info; #if PY_VERSION_HEX >= 0x030B00a4 tmp_value = exc_info->exc_value; exc_info->exc_value = local_value; tmp_type = NULL; tmp_tb = NULL; Py_XDECREF(local_type); Py_XDECREF(local_tb); #else tmp_type = exc_info->exc_type; tmp_value = exc_info->exc_value; tmp_tb = exc_info->exc_traceback; exc_info->exc_type = local_type; exc_info->exc_value = local_value; exc_info->exc_traceback = local_tb; #endif } #else tmp_type = tstate->exc_type; tmp_value = tstate->exc_value; tmp_tb = tstate->exc_traceback; tstate->exc_type = local_type; tstate->exc_value = local_value; tstate->exc_traceback = local_tb; #endif Py_XDECREF(tmp_type); Py_XDECREF(tmp_value); Py_XDECREF(tmp_tb); #elif __PYX_LIMITED_VERSION_HEX >= 0x030b0000 PyErr_SetHandledException(local_value); Py_XDECREF(local_value); Py_XDECREF(local_type); Py_XDECREF(local_tb); #else PyErr_SetExcInfo(local_type, local_value, local_tb); #endif return 0; #if __PYX_LIMITED_VERSION_HEX <= 0x030C0000 bad: *type = 0; *value = 0; *tb = 0; Py_XDECREF(local_type); Py_XDECREF(local_value); Py_XDECREF(local_tb); return -1; #endif } /* PyObjectCall (used by PyObjectFastCall) */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) { PyObject *result; ternaryfunc call = Py_TYPE(func)->tp_call; if (unlikely(!call)) return PyObject_Call(func, arg, kw); if (unlikely(Py_EnterRecursiveCall(" while calling a Python object"))) return NULL; result = (*call)(func, arg, kw); Py_LeaveRecursiveCall(); if (unlikely(!result) && unlikely(!PyErr_Occurred())) { PyErr_SetString( PyExc_SystemError, "NULL result without error in PyObject_Call"); } return result; } #endif /* PyObjectCallMethO (used by PyObjectFastCall) */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) { PyObject *self, *result; PyCFunction cfunc; cfunc = __Pyx_CyOrPyCFunction_GET_FUNCTION(func); self = __Pyx_CyOrPyCFunction_GET_SELF(func); if (unlikely(Py_EnterRecursiveCall(" while calling a Python object"))) return NULL; result = cfunc(self, arg); Py_LeaveRecursiveCall(); if (unlikely(!result) && unlikely(!PyErr_Occurred())) { PyErr_SetString( PyExc_SystemError, "NULL result without error in PyObject_Call"); } return result; } #endif /* PyObjectFastCall */ #if PY_VERSION_HEX < 0x03090000 || CYTHON_COMPILING_IN_LIMITED_API static PyObject* __Pyx_PyObject_FastCall_fallback(PyObject *func, PyObject * const*args, size_t nargs, PyObject *kwargs) { PyObject *argstuple; PyObject *result = 0; size_t i; argstuple = PyTuple_New((Py_ssize_t)nargs); if (unlikely(!argstuple)) return NULL; for (i = 0; i < nargs; i++) { Py_INCREF(args[i]); if (__Pyx_PyTuple_SET_ITEM(argstuple, (Py_ssize_t)i, args[i]) != (0)) goto bad; } result = __Pyx_PyObject_Call(func, argstuple, kwargs); bad: Py_DECREF(argstuple); return result; } #endif #if CYTHON_VECTORCALL && !CYTHON_COMPILING_IN_LIMITED_API #if PY_VERSION_HEX < 0x03090000 #define __Pyx_PyVectorcall_Function(callable) _PyVectorcall_Function(callable) #elif CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE vectorcallfunc __Pyx_PyVectorcall_Function(PyObject *callable) { PyTypeObject *tp = Py_TYPE(callable); #if defined(__Pyx_CyFunction_USED) if (__Pyx_CyFunction_CheckExact(callable)) { return __Pyx_CyFunction_func_vectorcall(callable); } #endif if (!PyType_HasFeature(tp, Py_TPFLAGS_HAVE_VECTORCALL)) { return NULL; } assert(PyCallable_Check(callable)); Py_ssize_t offset = tp->tp_vectorcall_offset; assert(offset > 0); vectorcallfunc ptr; memcpy(&ptr, (char *) callable + offset, sizeof(ptr)); return ptr; } #else #define __Pyx_PyVectorcall_Function(callable) PyVectorcall_Function(callable) #endif #endif static CYTHON_INLINE PyObject* __Pyx_PyObject_FastCallDict(PyObject *func, PyObject *const *args, size_t _nargs, PyObject *kwargs) { Py_ssize_t nargs = __Pyx_PyVectorcall_NARGS(_nargs); #if CYTHON_COMPILING_IN_CPYTHON if (nargs == 0 && kwargs == NULL) { if (__Pyx_CyOrPyCFunction_Check(func) && likely( __Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_NOARGS)) return __Pyx_PyObject_CallMethO(func, NULL); } else if (nargs == 1 && kwargs == NULL) { if (__Pyx_CyOrPyCFunction_Check(func) && likely( __Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_O)) return __Pyx_PyObject_CallMethO(func, args[0]); } #endif if (kwargs == NULL) { #if CYTHON_VECTORCALL #if CYTHON_COMPILING_IN_LIMITED_API return PyObject_Vectorcall(func, args, _nargs, NULL); #else vectorcallfunc f = __Pyx_PyVectorcall_Function(func); if (f) { return f(func, args, _nargs, NULL); } #endif #endif } if (nargs == 0) { return __Pyx_PyObject_Call(func, __pyx_mstate_global->__pyx_empty_tuple, kwargs); } #if PY_VERSION_HEX >= 0x03090000 && !CYTHON_COMPILING_IN_LIMITED_API return PyObject_VectorcallDict(func, args, (size_t)nargs, kwargs); #else return __Pyx_PyObject_FastCall_fallback(func, args, (size_t)nargs, kwargs); #endif } /* RaiseException */ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { PyObject* owned_instance = NULL; if (tb == Py_None) { tb = 0; } else if (tb && !PyTraceBack_Check(tb)) { PyErr_SetString(PyExc_TypeError, "raise: arg 3 must be a traceback or None"); goto bad; } if (value == Py_None) value = 0; if (PyExceptionInstance_Check(type)) { if (value) { PyErr_SetString(PyExc_TypeError, "instance exception may not have a separate value"); goto bad; } value = type; type = (PyObject*) Py_TYPE(value); } else if (PyExceptionClass_Check(type)) { PyObject *instance_class = NULL; if (value && PyExceptionInstance_Check(value)) { instance_class = (PyObject*) Py_TYPE(value); if (instance_class != type) { int is_subclass = PyObject_IsSubclass(instance_class, type); if (!is_subclass) { instance_class = NULL; } else if (unlikely(is_subclass == -1)) { goto bad; } else { type = instance_class; } } } if (!instance_class) { PyObject *args; if (!value) args = PyTuple_New(0); else if (PyTuple_Check(value)) { Py_INCREF(value); args = value; } else args = PyTuple_Pack(1, value); if (!args) goto bad; owned_instance = PyObject_Call(type, args, NULL); Py_DECREF(args); if (!owned_instance) goto bad; value = owned_instance; if (!PyExceptionInstance_Check(value)) { PyErr_Format(PyExc_TypeError, "calling %R should have returned an instance of " "BaseException, not %R", type, Py_TYPE(value)); goto bad; } } } else { PyErr_SetString(PyExc_TypeError, "raise: exception class must be a subclass of BaseException"); goto bad; } if (cause) { PyObject *fixed_cause; if (cause == Py_None) { fixed_cause = NULL; } else if (PyExceptionClass_Check(cause)) { fixed_cause = PyObject_CallObject(cause, NULL); if (fixed_cause == NULL) goto bad; } else if (PyExceptionInstance_Check(cause)) { fixed_cause = cause; Py_INCREF(fixed_cause); } else { PyErr_SetString(PyExc_TypeError, "exception causes must derive from " "BaseException"); goto bad; } PyException_SetCause(value, fixed_cause); } PyErr_SetObject(type, value); if (tb) { #if PY_VERSION_HEX >= 0x030C00A6 PyException_SetTraceback(value, tb); #elif CYTHON_FAST_THREAD_STATE PyThreadState *tstate = __Pyx_PyThreadState_Current; PyObject* tmp_tb = tstate->curexc_traceback; if (tb != tmp_tb) { Py_INCREF(tb); tstate->curexc_traceback = tb; Py_XDECREF(tmp_tb); } #else PyObject *tmp_type, *tmp_value, *tmp_tb; PyErr_Fetch(&tmp_type, &tmp_value, &tmp_tb); Py_INCREF(tb); PyErr_Restore(tmp_type, tmp_value, tb); Py_XDECREF(tmp_tb); #endif } bad: Py_XDECREF(owned_instance); return; } /* TupleAndListFromArray (used by fastcall) */ #if !CYTHON_COMPILING_IN_CPYTHON && CYTHON_METH_FASTCALL static CYTHON_INLINE PyObject * __Pyx_PyTuple_FromArray(PyObject *const *src, Py_ssize_t n) { PyObject *res; Py_ssize_t i; if (n <= 0) { return __Pyx_NewRef(__pyx_mstate_global->__pyx_empty_tuple); } res = PyTuple_New(n); if (unlikely(res == NULL)) return NULL; for (i = 0; i < n; i++) { if (unlikely(__Pyx_PyTuple_SET_ITEM(res, i, src[i]) < (0))) { Py_DECREF(res); return NULL; } Py_INCREF(src[i]); } return res; } #elif CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE void __Pyx_copy_object_array(PyObject *const *CYTHON_RESTRICT src, PyObject** CYTHON_RESTRICT dest, Py_ssize_t length) { PyObject *v; Py_ssize_t i; for (i = 0; i < length; i++) { v = dest[i] = src[i]; Py_INCREF(v); } } static CYTHON_INLINE PyObject * __Pyx_PyTuple_FromArray(PyObject *const *src, Py_ssize_t n) { PyObject *res; if (n <= 0) { return __Pyx_NewRef(__pyx_mstate_global->__pyx_empty_tuple); } res = PyTuple_New(n); if (unlikely(res == NULL)) return NULL; __Pyx_copy_object_array(src, ((PyTupleObject*)res)->ob_item, n); return res; } static CYTHON_INLINE PyObject * __Pyx_PyList_FromArray(PyObject *const *src, Py_ssize_t n) { PyObject *res; if (n <= 0) { return PyList_New(0); } res = PyList_New(n); if (unlikely(res == NULL)) return NULL; __Pyx_copy_object_array(src, ((PyListObject*)res)->ob_item, n); return res; } #endif /* BytesEquals (used by UnicodeEquals) */ static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals) { #if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API || CYTHON_COMPILING_IN_GRAAL ||\ !(CYTHON_ASSUME_SAFE_SIZE && CYTHON_ASSUME_SAFE_MACROS) return PyObject_RichCompareBool(s1, s2, equals); #else if (s1 == s2) { return (equals == Py_EQ); } else if (PyBytes_CheckExact(s1) & PyBytes_CheckExact(s2)) { const char *ps1, *ps2; Py_ssize_t length = PyBytes_GET_SIZE(s1); if (length != PyBytes_GET_SIZE(s2)) return (equals == Py_NE); ps1 = PyBytes_AS_STRING(s1); ps2 = PyBytes_AS_STRING(s2); if (ps1[0] != ps2[0]) { return (equals == Py_NE); } else if (length == 1) { return (equals == Py_EQ); } else { int result; #if CYTHON_USE_UNICODE_INTERNALS && (PY_VERSION_HEX < 0x030B0000) Py_hash_t hash1, hash2; hash1 = ((PyBytesObject*)s1)->ob_shash; hash2 = ((PyBytesObject*)s2)->ob_shash; if (hash1 != hash2 && hash1 != -1 && hash2 != -1) { return (equals == Py_NE); } #endif result = memcmp(ps1, ps2, (size_t)length); return (equals == Py_EQ) ? (result == 0) : (result != 0); } } else if ((s1 == Py_None) & PyBytes_CheckExact(s2)) { return (equals == Py_NE); } else if ((s2 == Py_None) & PyBytes_CheckExact(s1)) { return (equals == Py_NE); } else { int result; PyObject* py_result = PyObject_RichCompare(s1, s2, equals); if (!py_result) return -1; result = __Pyx_PyObject_IsTrue(py_result); Py_DECREF(py_result); return result; } #endif } /* UnicodeEquals (used by fastcall) */ static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) { #if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API || CYTHON_COMPILING_IN_GRAAL return PyObject_RichCompareBool(s1, s2, equals); #else int s1_is_unicode, s2_is_unicode; if (s1 == s2) { goto return_eq; } s1_is_unicode = PyUnicode_CheckExact(s1); s2_is_unicode = PyUnicode_CheckExact(s2); if (s1_is_unicode & s2_is_unicode) { Py_ssize_t length, length2; int kind; void *data1, *data2; #if !CYTHON_COMPILING_IN_LIMITED_API if (unlikely(__Pyx_PyUnicode_READY(s1) < 0) || unlikely(__Pyx_PyUnicode_READY(s2) < 0)) return -1; #endif length = __Pyx_PyUnicode_GET_LENGTH(s1); #if !CYTHON_ASSUME_SAFE_SIZE if (unlikely(length < 0)) return -1; #endif length2 = __Pyx_PyUnicode_GET_LENGTH(s2); #if !CYTHON_ASSUME_SAFE_SIZE if (unlikely(length2 < 0)) return -1; #endif if (length != length2) { goto return_ne; } #if CYTHON_USE_UNICODE_INTERNALS { Py_hash_t hash1, hash2; hash1 = ((PyASCIIObject*)s1)->hash; hash2 = ((PyASCIIObject*)s2)->hash; if (hash1 != hash2 && hash1 != -1 && hash2 != -1) { goto return_ne; } } #endif kind = __Pyx_PyUnicode_KIND(s1); if (kind != __Pyx_PyUnicode_KIND(s2)) { goto return_ne; } data1 = __Pyx_PyUnicode_DATA(s1); data2 = __Pyx_PyUnicode_DATA(s2); if (__Pyx_PyUnicode_READ(kind, data1, 0) != __Pyx_PyUnicode_READ(kind, data2, 0)) { goto return_ne; } else if (length == 1) { goto return_eq; } else { int result = memcmp(data1, data2, (size_t)(length * kind)); return (equals == Py_EQ) ? (result == 0) : (result != 0); } } else if ((s1 == Py_None) & s2_is_unicode) { goto return_ne; } else if ((s2 == Py_None) & s1_is_unicode) { goto return_ne; } else { int result; PyObject* py_result = PyObject_RichCompare(s1, s2, equals); if (!py_result) return -1; result = __Pyx_PyObject_IsTrue(py_result); Py_DECREF(py_result); return result; } return_eq: return (equals == Py_EQ); return_ne: return (equals == Py_NE); #endif } /* fastcall */ #if CYTHON_METH_FASTCALL static CYTHON_INLINE PyObject * __Pyx_GetKwValue_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues, PyObject *s) { Py_ssize_t i, n = __Pyx_PyTuple_GET_SIZE(kwnames); #if !CYTHON_ASSUME_SAFE_SIZE if (unlikely(n == -1)) return NULL; #endif for (i = 0; i < n; i++) { PyObject *namei = __Pyx_PyTuple_GET_ITEM(kwnames, i); #if !CYTHON_ASSUME_SAFE_MACROS if (unlikely(!namei)) return NULL; #endif if (s == namei) return kwvalues[i]; } for (i = 0; i < n; i++) { PyObject *namei = __Pyx_PyTuple_GET_ITEM(kwnames, i); #if !CYTHON_ASSUME_SAFE_MACROS if (unlikely(!namei)) return NULL; #endif int eq = __Pyx_PyUnicode_Equals(s, namei, Py_EQ); if (unlikely(eq != 0)) { if (unlikely(eq < 0)) return NULL; return kwvalues[i]; } } return NULL; } #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000 || CYTHON_COMPILING_IN_LIMITED_API CYTHON_UNUSED static PyObject *__Pyx_KwargsAsDict_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues) { Py_ssize_t i, nkwargs; PyObject *dict; #if !CYTHON_ASSUME_SAFE_SIZE nkwargs = PyTuple_Size(kwnames); if (unlikely(nkwargs < 0)) return NULL; #else nkwargs = PyTuple_GET_SIZE(kwnames); #endif dict = PyDict_New(); if (unlikely(!dict)) return NULL; for (i=0; itype, *target->method_name); if (unlikely(!method)) return -1; result = method; #if CYTHON_COMPILING_IN_CPYTHON if (likely(__Pyx_TypeCheck(method, &PyMethodDescr_Type))) { PyMethodDescrObject *descr = (PyMethodDescrObject*) method; target->func = descr->d_method->ml_meth; target->flag = descr->d_method->ml_flags & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_STACKLESS); } else #endif #if CYTHON_COMPILING_IN_PYPY #else if (PyCFunction_Check(method)) #endif { PyObject *self; int self_found; #if CYTHON_COMPILING_IN_LIMITED_API || CYTHON_COMPILING_IN_PYPY self = PyObject_GetAttrString(method, "__self__"); if (!self) { PyErr_Clear(); } #else self = PyCFunction_GET_SELF(method); #endif self_found = (self && self != Py_None); #if CYTHON_COMPILING_IN_LIMITED_API || CYTHON_COMPILING_IN_PYPY Py_XDECREF(self); #endif if (self_found) { PyObject *unbound_method = PyCFunction_New(&__Pyx_UnboundCMethod_Def, method); if (unlikely(!unbound_method)) return -1; Py_DECREF(method); result = unbound_method; } } #if !CYTHON_COMPILING_IN_CPYTHON_FREETHREADING if (unlikely(target->method)) { Py_DECREF(result); } else #endif target->method = result; return 0; } /* CallUnboundCMethod0 */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_CallUnboundCMethod0(__Pyx_CachedCFunction* cfunc, PyObject* self) { int was_initialized = __Pyx_CachedCFunction_GetAndSetInitializing(cfunc); if (likely(was_initialized == 2 && cfunc->func)) { if (likely(cfunc->flag == METH_NOARGS)) return __Pyx_CallCFunction(cfunc, self, NULL); if (likely(cfunc->flag == METH_FASTCALL)) return __Pyx_CallCFunctionFast(cfunc, self, NULL, 0); if (cfunc->flag == (METH_FASTCALL | METH_KEYWORDS)) return __Pyx_CallCFunctionFastWithKeywords(cfunc, self, NULL, 0, NULL); if (likely(cfunc->flag == (METH_VARARGS | METH_KEYWORDS))) return __Pyx_CallCFunctionWithKeywords(cfunc, self, __pyx_mstate_global->__pyx_empty_tuple, NULL); if (cfunc->flag == METH_VARARGS) return __Pyx_CallCFunction(cfunc, self, __pyx_mstate_global->__pyx_empty_tuple); return __Pyx__CallUnboundCMethod0(cfunc, self); } #if CYTHON_COMPILING_IN_CPYTHON_FREETHREADING else if (unlikely(was_initialized == 1)) { __Pyx_CachedCFunction tmp_cfunc = { #ifndef __cplusplus 0 #endif }; tmp_cfunc.type = cfunc->type; tmp_cfunc.method_name = cfunc->method_name; return __Pyx__CallUnboundCMethod0(&tmp_cfunc, self); } #endif PyObject *result = __Pyx__CallUnboundCMethod0(cfunc, self); __Pyx_CachedCFunction_SetFinishedInitializing(cfunc); return result; } #endif static PyObject* __Pyx__CallUnboundCMethod0(__Pyx_CachedCFunction* cfunc, PyObject* self) { PyObject *result; if (unlikely(!cfunc->method) && unlikely(__Pyx_TryUnpackUnboundCMethod(cfunc) < 0)) return NULL; result = __Pyx_PyObject_CallOneArg(cfunc->method, self); return result; } /* py_dict_items (used by OwnedDictNext) */ static CYTHON_INLINE PyObject* __Pyx_PyDict_Items(PyObject* d) { return __Pyx_CallUnboundCMethod0(&__pyx_mstate_global->__pyx_umethod_PyDict_Type_items, d); } /* py_dict_values (used by OwnedDictNext) */ static CYTHON_INLINE PyObject* __Pyx_PyDict_Values(PyObject* d) { return __Pyx_CallUnboundCMethod0(&__pyx_mstate_global->__pyx_umethod_PyDict_Type_values, d); } /* OwnedDictNext (used by ParseKeywordsImpl) */ #if CYTHON_AVOID_BORROWED_REFS static int __Pyx_PyDict_NextRef(PyObject *p, PyObject **ppos, PyObject **pkey, PyObject **pvalue) { PyObject *next = NULL; if (!*ppos) { if (pvalue) { PyObject *dictview = pkey ? __Pyx_PyDict_Items(p) : __Pyx_PyDict_Values(p); if (unlikely(!dictview)) goto bad; *ppos = PyObject_GetIter(dictview); Py_DECREF(dictview); } else { *ppos = PyObject_GetIter(p); } if (unlikely(!*ppos)) goto bad; } next = PyIter_Next(*ppos); if (!next) { if (PyErr_Occurred()) goto bad; return 0; } if (pkey && pvalue) { *pkey = __Pyx_PySequence_ITEM(next, 0); if (unlikely(*pkey)) goto bad; *pvalue = __Pyx_PySequence_ITEM(next, 1); if (unlikely(*pvalue)) goto bad; Py_DECREF(next); } else if (pkey) { *pkey = next; } else { assert(pvalue); *pvalue = next; } return 1; bad: Py_XDECREF(next); #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d0000 PyErr_FormatUnraisable("Exception ignored in __Pyx_PyDict_NextRef"); #else PyErr_WriteUnraisable(__pyx_mstate_global->__pyx_n_u_Pyx_PyDict_NextRef); #endif if (pkey) *pkey = NULL; if (pvalue) *pvalue = NULL; return 0; } #else // !CYTHON_AVOID_BORROWED_REFS static int __Pyx_PyDict_NextRef(PyObject *p, Py_ssize_t *ppos, PyObject **pkey, PyObject **pvalue) { int result = PyDict_Next(p, ppos, pkey, pvalue); if (likely(result == 1)) { if (pkey) Py_INCREF(*pkey); if (pvalue) Py_INCREF(*pvalue); } return result; } #endif /* RaiseDoubleKeywords (used by ParseKeywordsImpl) */ static void __Pyx_RaiseDoubleKeywordsError( const char* func_name, PyObject* kw_name) { PyErr_Format(PyExc_TypeError, "%s() got multiple values for keyword argument '%U'", func_name, kw_name); } /* CallUnboundCMethod2 */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject *__Pyx_CallUnboundCMethod2(__Pyx_CachedCFunction *cfunc, PyObject *self, PyObject *arg1, PyObject *arg2) { int was_initialized = __Pyx_CachedCFunction_GetAndSetInitializing(cfunc); if (likely(was_initialized == 2 && cfunc->func)) { PyObject *args[2] = {arg1, arg2}; if (cfunc->flag == METH_FASTCALL) { return __Pyx_CallCFunctionFast(cfunc, self, args, 2); } if (cfunc->flag == (METH_FASTCALL | METH_KEYWORDS)) return __Pyx_CallCFunctionFastWithKeywords(cfunc, self, args, 2, NULL); } #if CYTHON_COMPILING_IN_CPYTHON_FREETHREADING else if (unlikely(was_initialized == 1)) { __Pyx_CachedCFunction tmp_cfunc = { #ifndef __cplusplus 0 #endif }; tmp_cfunc.type = cfunc->type; tmp_cfunc.method_name = cfunc->method_name; return __Pyx__CallUnboundCMethod2(&tmp_cfunc, self, arg1, arg2); } #endif PyObject *result = __Pyx__CallUnboundCMethod2(cfunc, self, arg1, arg2); __Pyx_CachedCFunction_SetFinishedInitializing(cfunc); return result; } #endif static PyObject* __Pyx__CallUnboundCMethod2(__Pyx_CachedCFunction* cfunc, PyObject* self, PyObject* arg1, PyObject* arg2){ if (unlikely(!cfunc->func && !cfunc->method) && unlikely(__Pyx_TryUnpackUnboundCMethod(cfunc) < 0)) return NULL; #if CYTHON_COMPILING_IN_CPYTHON if (cfunc->func && (cfunc->flag & METH_VARARGS)) { PyObject *result = NULL; PyObject *args = PyTuple_New(2); if (unlikely(!args)) return NULL; Py_INCREF(arg1); PyTuple_SET_ITEM(args, 0, arg1); Py_INCREF(arg2); PyTuple_SET_ITEM(args, 1, arg2); if (cfunc->flag & METH_KEYWORDS) result = __Pyx_CallCFunctionWithKeywords(cfunc, self, args, NULL); else result = __Pyx_CallCFunction(cfunc, self, args); Py_DECREF(args); return result; } #endif { PyObject *args[4] = {NULL, self, arg1, arg2}; return __Pyx_PyObject_FastCall(cfunc->method, args+1, 3 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET); } } /* ParseKeywordsImpl (used by ParseKeywords) */ static int __Pyx_ValidateDuplicatePosArgs( PyObject *kwds, PyObject ** const argnames[], PyObject ** const *first_kw_arg, const char* function_name) { PyObject ** const *name = argnames; while (name != first_kw_arg) { PyObject *key = **name; int found = PyDict_Contains(kwds, key); if (unlikely(found)) { if (found == 1) __Pyx_RaiseDoubleKeywordsError(function_name, key); goto bad; } name++; } return 0; bad: return -1; } #if CYTHON_USE_UNICODE_INTERNALS static CYTHON_INLINE int __Pyx_UnicodeKeywordsEqual(PyObject *s1, PyObject *s2) { int kind; Py_ssize_t len = PyUnicode_GET_LENGTH(s1); if (len != PyUnicode_GET_LENGTH(s2)) return 0; kind = PyUnicode_KIND(s1); if (kind != PyUnicode_KIND(s2)) return 0; const void *data1 = PyUnicode_DATA(s1); const void *data2 = PyUnicode_DATA(s2); return (memcmp(data1, data2, (size_t) len * (size_t) kind) == 0); } #endif static int __Pyx_MatchKeywordArg_str( PyObject *key, PyObject ** const argnames[], PyObject ** const *first_kw_arg, size_t *index_found, const char *function_name) { PyObject ** const *name; #if CYTHON_USE_UNICODE_INTERNALS Py_hash_t key_hash = ((PyASCIIObject*)key)->hash; if (unlikely(key_hash == -1)) { key_hash = PyObject_Hash(key); if (unlikely(key_hash == -1)) goto bad; } #endif name = first_kw_arg; while (*name) { PyObject *name_str = **name; #if CYTHON_USE_UNICODE_INTERNALS if (key_hash == ((PyASCIIObject*)name_str)->hash && __Pyx_UnicodeKeywordsEqual(name_str, key)) { *index_found = (size_t) (name - argnames); return 1; } #else #if CYTHON_ASSUME_SAFE_SIZE if (PyUnicode_GET_LENGTH(name_str) == PyUnicode_GET_LENGTH(key)) #endif { int cmp = PyUnicode_Compare(name_str, key); if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; if (cmp == 0) { *index_found = (size_t) (name - argnames); return 1; } } #endif name++; } name = argnames; while (name != first_kw_arg) { PyObject *name_str = **name; #if CYTHON_USE_UNICODE_INTERNALS if (unlikely(key_hash == ((PyASCIIObject*)name_str)->hash)) { if (__Pyx_UnicodeKeywordsEqual(name_str, key)) goto arg_passed_twice; } #else #if CYTHON_ASSUME_SAFE_SIZE if (PyUnicode_GET_LENGTH(name_str) == PyUnicode_GET_LENGTH(key)) #endif { if (unlikely(name_str == key)) goto arg_passed_twice; int cmp = PyUnicode_Compare(name_str, key); if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; if (cmp == 0) goto arg_passed_twice; } #endif name++; } return 0; arg_passed_twice: __Pyx_RaiseDoubleKeywordsError(function_name, key); goto bad; bad: return -1; } static int __Pyx_MatchKeywordArg_nostr( PyObject *key, PyObject ** const argnames[], PyObject ** const *first_kw_arg, size_t *index_found, const char *function_name) { PyObject ** const *name; if (unlikely(!PyUnicode_Check(key))) goto invalid_keyword_type; name = first_kw_arg; while (*name) { int cmp = PyObject_RichCompareBool(**name, key, Py_EQ); if (cmp == 1) { *index_found = (size_t) (name - argnames); return 1; } if (unlikely(cmp == -1)) goto bad; name++; } name = argnames; while (name != first_kw_arg) { int cmp = PyObject_RichCompareBool(**name, key, Py_EQ); if (unlikely(cmp != 0)) { if (cmp == 1) goto arg_passed_twice; else goto bad; } name++; } return 0; arg_passed_twice: __Pyx_RaiseDoubleKeywordsError(function_name, key); goto bad; invalid_keyword_type: PyErr_Format(PyExc_TypeError, "%.200s() keywords must be strings", function_name); goto bad; bad: return -1; } static CYTHON_INLINE int __Pyx_MatchKeywordArg( PyObject *key, PyObject ** const argnames[], PyObject ** const *first_kw_arg, size_t *index_found, const char *function_name) { return likely(PyUnicode_CheckExact(key)) ? __Pyx_MatchKeywordArg_str(key, argnames, first_kw_arg, index_found, function_name) : __Pyx_MatchKeywordArg_nostr(key, argnames, first_kw_arg, index_found, function_name); } static void __Pyx_RejectUnknownKeyword( PyObject *kwds, PyObject ** const argnames[], PyObject ** const *first_kw_arg, const char *function_name) { #if CYTHON_AVOID_BORROWED_REFS PyObject *pos = NULL; #else Py_ssize_t pos = 0; #endif PyObject *key = NULL; __Pyx_BEGIN_CRITICAL_SECTION(kwds); while ( #if CYTHON_AVOID_BORROWED_REFS __Pyx_PyDict_NextRef(kwds, &pos, &key, NULL) #else PyDict_Next(kwds, &pos, &key, NULL) #endif ) { PyObject** const *name = first_kw_arg; while (*name && (**name != key)) name++; if (!*name) { size_t index_found = 0; int cmp = __Pyx_MatchKeywordArg(key, argnames, first_kw_arg, &index_found, function_name); if (cmp != 1) { if (cmp == 0) { PyErr_Format(PyExc_TypeError, "%s() got an unexpected keyword argument '%U'", function_name, key); } #if CYTHON_AVOID_BORROWED_REFS Py_DECREF(key); #endif break; } } #if CYTHON_AVOID_BORROWED_REFS Py_DECREF(key); #endif } __Pyx_END_CRITICAL_SECTION(); #if CYTHON_AVOID_BORROWED_REFS Py_XDECREF(pos); #endif assert(PyErr_Occurred()); } static int __Pyx_ParseKeywordDict( PyObject *kwds, PyObject ** const argnames[], PyObject *values[], Py_ssize_t num_pos_args, Py_ssize_t num_kwargs, const char* function_name, int ignore_unknown_kwargs) { PyObject** const *name; PyObject** const *first_kw_arg = argnames + num_pos_args; Py_ssize_t extracted = 0; #if !CYTHON_COMPILING_IN_PYPY || defined(PyArg_ValidateKeywordArguments) if (unlikely(!PyArg_ValidateKeywordArguments(kwds))) return -1; #endif name = first_kw_arg; while (*name && num_kwargs > extracted) { PyObject * key = **name; PyObject *value; int found = 0; #if __PYX_LIMITED_VERSION_HEX >= 0x030d0000 found = PyDict_GetItemRef(kwds, key, &value); #else value = PyDict_GetItemWithError(kwds, key); if (value) { Py_INCREF(value); found = 1; } else { if (unlikely(PyErr_Occurred())) goto bad; } #endif if (found) { if (unlikely(found < 0)) goto bad; values[name-argnames] = value; extracted++; } name++; } if (num_kwargs > extracted) { if (ignore_unknown_kwargs) { if (unlikely(__Pyx_ValidateDuplicatePosArgs(kwds, argnames, first_kw_arg, function_name) == -1)) goto bad; } else { __Pyx_RejectUnknownKeyword(kwds, argnames, first_kw_arg, function_name); goto bad; } } return 0; bad: return -1; } static int __Pyx_ParseKeywordDictToDict( PyObject *kwds, PyObject ** const argnames[], PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, const char* function_name) { PyObject** const *name; PyObject** const *first_kw_arg = argnames + num_pos_args; Py_ssize_t len; #if !CYTHON_COMPILING_IN_PYPY || defined(PyArg_ValidateKeywordArguments) if (unlikely(!PyArg_ValidateKeywordArguments(kwds))) return -1; #endif if (PyDict_Update(kwds2, kwds) < 0) goto bad; name = first_kw_arg; while (*name) { PyObject *key = **name; PyObject *value; #if !CYTHON_COMPILING_IN_LIMITED_API && (PY_VERSION_HEX >= 0x030d00A2 || defined(PyDict_Pop)) int found = PyDict_Pop(kwds2, key, &value); if (found) { if (unlikely(found < 0)) goto bad; values[name-argnames] = value; } #elif __PYX_LIMITED_VERSION_HEX >= 0x030d0000 int found = PyDict_GetItemRef(kwds2, key, &value); if (found) { if (unlikely(found < 0)) goto bad; values[name-argnames] = value; if (unlikely(PyDict_DelItem(kwds2, key) < 0)) goto bad; } #else #if CYTHON_COMPILING_IN_CPYTHON value = _PyDict_Pop(kwds2, key, kwds2); #else value = __Pyx_CallUnboundCMethod2(&__pyx_mstate_global->__pyx_umethod_PyDict_Type_pop, kwds2, key, kwds2); #endif if (value == kwds2) { Py_DECREF(value); } else { if (unlikely(!value)) goto bad; values[name-argnames] = value; } #endif name++; } len = PyDict_Size(kwds2); if (len > 0) { return __Pyx_ValidateDuplicatePosArgs(kwds, argnames, first_kw_arg, function_name); } else if (unlikely(len == -1)) { goto bad; } return 0; bad: return -1; } static int __Pyx_ParseKeywordsTuple( PyObject *kwds, PyObject * const *kwvalues, PyObject ** const argnames[], PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, Py_ssize_t num_kwargs, const char* function_name, int ignore_unknown_kwargs) { PyObject *key = NULL; PyObject** const * name; PyObject** const *first_kw_arg = argnames + num_pos_args; for (Py_ssize_t pos = 0; pos < num_kwargs; pos++) { #if CYTHON_AVOID_BORROWED_REFS key = __Pyx_PySequence_ITEM(kwds, pos); #else key = __Pyx_PyTuple_GET_ITEM(kwds, pos); #endif #if !CYTHON_ASSUME_SAFE_MACROS if (unlikely(!key)) goto bad; #endif name = first_kw_arg; while (*name && (**name != key)) name++; if (*name) { PyObject *value = kwvalues[pos]; values[name-argnames] = __Pyx_NewRef(value); } else { size_t index_found = 0; int cmp = __Pyx_MatchKeywordArg(key, argnames, first_kw_arg, &index_found, function_name); if (cmp == 1) { PyObject *value = kwvalues[pos]; values[index_found] = __Pyx_NewRef(value); } else { if (unlikely(cmp == -1)) goto bad; if (kwds2) { PyObject *value = kwvalues[pos]; if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad; } else if (!ignore_unknown_kwargs) { goto invalid_keyword; } } } #if CYTHON_AVOID_BORROWED_REFS Py_DECREF(key); key = NULL; #endif } return 0; invalid_keyword: PyErr_Format(PyExc_TypeError, "%s() got an unexpected keyword argument '%U'", function_name, key); goto bad; bad: #if CYTHON_AVOID_BORROWED_REFS Py_XDECREF(key); #endif return -1; } /* ParseKeywords */ static int __Pyx_ParseKeywords( PyObject *kwds, PyObject * const *kwvalues, PyObject ** const argnames[], PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, Py_ssize_t num_kwargs, const char* function_name, int ignore_unknown_kwargs) { if (CYTHON_METH_FASTCALL && likely(PyTuple_Check(kwds))) return __Pyx_ParseKeywordsTuple(kwds, kwvalues, argnames, kwds2, values, num_pos_args, num_kwargs, function_name, ignore_unknown_kwargs); else if (kwds2) return __Pyx_ParseKeywordDictToDict(kwds, argnames, kwds2, values, num_pos_args, function_name); else return __Pyx_ParseKeywordDict(kwds, argnames, values, num_pos_args, num_kwargs, function_name, ignore_unknown_kwargs); } /* RaiseArgTupleInvalid */ static void __Pyx_RaiseArgtupleInvalid( const char* func_name, int exact, Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found) { Py_ssize_t num_expected; const char *more_or_less; if (num_found < num_min) { num_expected = num_min; more_or_less = "at least"; } else { num_expected = num_max; more_or_less = "at most"; } if (exact) { more_or_less = "exactly"; } PyErr_Format(PyExc_TypeError, "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)", func_name, more_or_less, num_expected, (num_expected == 1) ? "" : "s", num_found); } /* ArgTypeTestFunc (used by ArgTypeTest) */ static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *name, int exact) { __Pyx_TypeName type_name; __Pyx_TypeName obj_type_name; PyObject *extra_info = __pyx_mstate_global->__pyx_empty_unicode; int from_annotation_subclass = 0; if (unlikely(!type)) { PyErr_SetString(PyExc_SystemError, "Missing type object"); return 0; } else if (!exact) { if (likely(__Pyx_TypeCheck(obj, type))) return 1; } else if (exact == 2) { if (__Pyx_TypeCheck(obj, type)) { from_annotation_subclass = 1; extra_info = __pyx_mstate_global->__pyx_kp_u_Note_that_Cython_is_deliberately; } } type_name = __Pyx_PyType_GetFullyQualifiedName(type); obj_type_name = __Pyx_PyType_GetFullyQualifiedName(Py_TYPE(obj)); PyErr_Format(PyExc_TypeError, "Argument '%.200s' has incorrect type (expected " __Pyx_FMT_TYPENAME ", got " __Pyx_FMT_TYPENAME ")" #if __PYX_LIMITED_VERSION_HEX < 0x030C0000 "%s%U" #endif , name, type_name, obj_type_name #if __PYX_LIMITED_VERSION_HEX < 0x030C0000 , (from_annotation_subclass ? ". " : ""), extra_info #endif ); #if __PYX_LIMITED_VERSION_HEX >= 0x030C0000 if (exact == 2 && from_annotation_subclass) { PyObject *res; PyObject *vargs[2]; vargs[0] = PyErr_GetRaisedException(); vargs[1] = extra_info; res = PyObject_VectorcallMethod(__pyx_mstate_global->__pyx_kp_u_add_note, vargs, 2, NULL); Py_XDECREF(res); PyErr_SetRaisedException(vargs[0]); } #endif __Pyx_DECREF_TypeName(type_name); __Pyx_DECREF_TypeName(obj_type_name); return 0; } /* RaiseUnexpectedTypeError (used by Intern) */ static int __Pyx_RaiseUnexpectedTypeError(const char *expected, PyObject *obj) { __Pyx_TypeName obj_type_name = __Pyx_PyType_GetFullyQualifiedName(Py_TYPE(obj)); PyErr_Format(PyExc_TypeError, "Expected %s, got " __Pyx_FMT_TYPENAME, expected, obj_type_name); __Pyx_DECREF_TypeName(obj_type_name); return 0; } /* Intern */ static PyObject* __Pyx_Intern(PyObject* s) { if (unlikely(!PyUnicode_CheckExact(s))) { __Pyx_RaiseUnexpectedTypeError("str", s); return NULL; } Py_INCREF(s); PyUnicode_InternInPlace(&s); return s; } /* PyObjectSetAttrStr */ #if CYTHON_USE_TYPE_SLOTS static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value) { PyTypeObject* tp = Py_TYPE(obj); if (likely(tp->tp_setattro)) return tp->tp_setattro(obj, attr_name, value); return PyObject_SetAttr(obj, attr_name, value); } #endif /* RejectKeywords */ static void __Pyx_RejectKeywords(const char* function_name, PyObject *kwds) { PyObject *key = NULL; if (CYTHON_METH_FASTCALL && likely(PyTuple_Check(kwds))) { key = __Pyx_PySequence_ITEM(kwds, 0); } else { #if CYTHON_AVOID_BORROWED_REFS PyObject *pos = NULL; #else Py_ssize_t pos = 0; #endif #if !CYTHON_COMPILING_IN_PYPY || defined(PyArg_ValidateKeywordArguments) if (unlikely(!PyArg_ValidateKeywordArguments(kwds))) return; #endif __Pyx_PyDict_NextRef(kwds, &pos, &key, NULL); #if CYTHON_AVOID_BORROWED_REFS Py_XDECREF(pos); #endif } if (likely(key)) { PyErr_Format(PyExc_TypeError, "%s() got an unexpected keyword argument '%U'", function_name, key); Py_DECREF(key); } } /* PyObjectFastCallMethod */ #if !CYTHON_VECTORCALL || PY_VERSION_HEX < 0x03090000 static PyObject *__Pyx_PyObject_FastCallMethod(PyObject *name, PyObject *const *args, size_t nargsf) { PyObject *result; PyObject *attr = PyObject_GetAttr(args[0], name); if (unlikely(!attr)) return NULL; result = __Pyx_PyObject_FastCall(attr, args+1, nargsf - 1); Py_DECREF(attr); return result; } #endif /* RaiseTooManyValuesToUnpack */ static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { PyErr_Format(PyExc_ValueError, "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); } /* RaiseNeedMoreValuesToUnpack */ static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { PyErr_Format(PyExc_ValueError, "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", index, (index == 1) ? "" : "s"); } /* IterFinish */ static CYTHON_INLINE int __Pyx_IterFinish(void) { PyObject* exc_type; __Pyx_PyThreadState_declare __Pyx_PyThreadState_assign exc_type = __Pyx_PyErr_CurrentExceptionType(); if (unlikely(exc_type)) { if (unlikely(!__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) return -1; __Pyx_PyErr_Clear(); return 0; } return 0; } /* UnpackItemEndCheck */ static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) { if (unlikely(retval)) { Py_DECREF(retval); __Pyx_RaiseTooManyValuesError(expected); return -1; } return __Pyx_IterFinish(); } /* PyObjectFormatAndDecref */ static CYTHON_INLINE PyObject* __Pyx_PyObject_FormatSimpleAndDecref(PyObject* s, PyObject* f) { if (unlikely(!s)) return NULL; if (likely(PyUnicode_CheckExact(s))) return s; return __Pyx_PyObject_FormatAndDecref(s, f); } static CYTHON_INLINE PyObject* __Pyx_PyObject_FormatAndDecref(PyObject* s, PyObject* f) { PyObject *result; if (unlikely(!s)) return NULL; result = PyObject_Format(s, f); Py_DECREF(s); return result; } /* PyUnicode_Unicode */ static CYTHON_INLINE PyObject* __Pyx_PyUnicode_Unicode(PyObject *obj) { if (unlikely(obj == Py_None)) obj = __pyx_mstate_global->__pyx_kp_u_None; return __Pyx_NewRef(obj); } /* CIntToDigits (used by CIntToPyUnicode) */ static const char DIGIT_PAIRS_10[2*10*10+1] = { "00010203040506070809" "10111213141516171819" "20212223242526272829" "30313233343536373839" "40414243444546474849" "50515253545556575859" "60616263646566676869" "70717273747576777879" "80818283848586878889" "90919293949596979899" }; static const char DIGIT_PAIRS_8[2*8*8+1] = { "0001020304050607" "1011121314151617" "2021222324252627" "3031323334353637" "4041424344454647" "5051525354555657" "6061626364656667" "7071727374757677" }; static const char DIGITS_HEX[2*16+1] = { "0123456789abcdef" "0123456789ABCDEF" }; /* BuildPyUnicode (used by COrdinalToPyUnicode) */ static PyObject* __Pyx_PyUnicode_BuildFromAscii(Py_ssize_t ulength, const char* chars, int clength, int prepend_sign, char padding_char) { PyObject *uval; Py_ssize_t uoffset = ulength - clength; #if CYTHON_USE_UNICODE_INTERNALS Py_ssize_t i; void *udata; uval = PyUnicode_New(ulength, 127); if (unlikely(!uval)) return NULL; udata = PyUnicode_DATA(uval); if (uoffset > 0) { i = 0; if (prepend_sign) { __Pyx_PyUnicode_WRITE(PyUnicode_1BYTE_KIND, udata, 0, '-'); i++; } for (; i < uoffset; i++) { __Pyx_PyUnicode_WRITE(PyUnicode_1BYTE_KIND, udata, i, padding_char); } } for (i=0; i < clength; i++) { __Pyx_PyUnicode_WRITE(PyUnicode_1BYTE_KIND, udata, uoffset+i, chars[i]); } #else { PyObject *sign = NULL, *padding = NULL; uval = NULL; if (uoffset > 0) { prepend_sign = !!prepend_sign; if (uoffset > prepend_sign) { padding = PyUnicode_FromOrdinal(padding_char); if (likely(padding) && uoffset > prepend_sign + 1) { PyObject *tmp = PySequence_Repeat(padding, uoffset - prepend_sign); Py_DECREF(padding); padding = tmp; } if (unlikely(!padding)) goto done_or_error; } if (prepend_sign) { sign = PyUnicode_FromOrdinal('-'); if (unlikely(!sign)) goto done_or_error; } } uval = PyUnicode_DecodeASCII(chars, clength, NULL); if (likely(uval) && padding) { PyObject *tmp = PyUnicode_Concat(padding, uval); Py_DECREF(uval); uval = tmp; } if (likely(uval) && sign) { PyObject *tmp = PyUnicode_Concat(sign, uval); Py_DECREF(uval); uval = tmp; } done_or_error: Py_XDECREF(padding); Py_XDECREF(sign); } #endif return uval; } /* COrdinalToPyUnicode (used by CIntToPyUnicode) */ static CYTHON_INLINE int __Pyx_CheckUnicodeValue(int value) { return value <= 1114111; } static PyObject* __Pyx_PyUnicode_FromOrdinal_Padded(int value, Py_ssize_t ulength, char padding_char) { Py_ssize_t padding_length = ulength - 1; if (likely((padding_length <= 250) && (value < 0xD800 || value > 0xDFFF))) { char chars[256]; if (value <= 255) { memset(chars, padding_char, (size_t) padding_length); chars[ulength-1] = (char) value; return PyUnicode_DecodeLatin1(chars, ulength, NULL); } char *cpos = chars + sizeof(chars); if (value < 0x800) { *--cpos = (char) (0x80 | (value & 0x3f)); value >>= 6; *--cpos = (char) (0xc0 | (value & 0x1f)); } else if (value < 0x10000) { *--cpos = (char) (0x80 | (value & 0x3f)); value >>= 6; *--cpos = (char) (0x80 | (value & 0x3f)); value >>= 6; *--cpos = (char) (0xe0 | (value & 0x0f)); } else { *--cpos = (char) (0x80 | (value & 0x3f)); value >>= 6; *--cpos = (char) (0x80 | (value & 0x3f)); value >>= 6; *--cpos = (char) (0x80 | (value & 0x3f)); value >>= 6; *--cpos = (char) (0xf0 | (value & 0x07)); } cpos -= padding_length; memset(cpos, padding_char, (size_t) padding_length); return PyUnicode_DecodeUTF8(cpos, chars + sizeof(chars) - cpos, NULL); } if (value <= 127 && CYTHON_USE_UNICODE_INTERNALS) { const char chars[1] = {(char) value}; return __Pyx_PyUnicode_BuildFromAscii(ulength, chars, 1, 0, padding_char); } { PyObject *uchar, *padding_uchar, *padding, *result; padding_uchar = PyUnicode_FromOrdinal(padding_char); if (unlikely(!padding_uchar)) return NULL; padding = PySequence_Repeat(padding_uchar, padding_length); Py_DECREF(padding_uchar); if (unlikely(!padding)) return NULL; uchar = PyUnicode_FromOrdinal(value); if (unlikely(!uchar)) { Py_DECREF(padding); return NULL; } result = PyUnicode_Concat(padding, uchar); Py_DECREF(padding); Py_DECREF(uchar); return result; } } /* CIntToPyUnicode */ static CYTHON_INLINE PyObject* __Pyx_uchar___Pyx_PyUnicode_From_long(long value, Py_ssize_t width, char padding_char) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const long neg_one = (long) -1, const_zero = (long) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; if (unlikely(!(is_unsigned || value == 0 || value > 0) || !(sizeof(value) <= 2 || value & ~ (long) 0x01fffff || __Pyx_CheckUnicodeValue((int) value)))) { PyErr_SetString(PyExc_OverflowError, "%c arg not in range(0x110000)"); return NULL; } if (width <= 1) { return PyUnicode_FromOrdinal((int) value); } return __Pyx_PyUnicode_FromOrdinal_Padded((int) value, width, padding_char); } static CYTHON_INLINE PyObject* __Pyx____Pyx_PyUnicode_From_long(long value, Py_ssize_t width, char padding_char, char format_char) { char digits[sizeof(long)*3+2]; char *dpos, *end = digits + sizeof(long)*3+2; const char *hex_digits = DIGITS_HEX; Py_ssize_t length, ulength; int prepend_sign, last_one_off; long remaining; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const long neg_one = (long) -1, const_zero = (long) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; if (format_char == 'X') { hex_digits += 16; format_char = 'x'; } remaining = value; last_one_off = 0; dpos = end; do { int digit_pos; switch (format_char) { case 'o': digit_pos = abs((int)(remaining % (8*8))); remaining = (long) (remaining / (8*8)); dpos -= 2; memcpy(dpos, DIGIT_PAIRS_8 + digit_pos * 2, 2); last_one_off = (digit_pos < 8); break; case 'd': digit_pos = abs((int)(remaining % (10*10))); remaining = (long) (remaining / (10*10)); dpos -= 2; memcpy(dpos, DIGIT_PAIRS_10 + digit_pos * 2, 2); last_one_off = (digit_pos < 10); break; case 'x': *(--dpos) = hex_digits[abs((int)(remaining % 16))]; remaining = (long) (remaining / 16); break; default: assert(0); break; } } while (unlikely(remaining != 0)); assert(!last_one_off || *dpos == '0'); dpos += last_one_off; length = end - dpos; ulength = length; prepend_sign = 0; if (!is_unsigned && value <= neg_one) { if (padding_char == ' ' || width <= length + 1) { *(--dpos) = '-'; ++length; } else { prepend_sign = 1; } ++ulength; } if (width > ulength) { ulength = width; } if (ulength == 1) { return PyUnicode_FromOrdinal(*dpos); } return __Pyx_PyUnicode_BuildFromAscii(ulength, dpos, (int) length, prepend_sign, padding_char); } /* PyDictVersioning (used by GetModuleGlobalName) */ #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_TYPE_SLOTS static CYTHON_INLINE PY_UINT64_T __Pyx_get_tp_dict_version(PyObject *obj) { PyObject *dict = Py_TYPE(obj)->tp_dict; return likely(dict) ? __PYX_GET_DICT_VERSION(dict) : 0; } static CYTHON_INLINE PY_UINT64_T __Pyx_get_object_dict_version(PyObject *obj) { PyObject **dictptr = NULL; Py_ssize_t offset = Py_TYPE(obj)->tp_dictoffset; if (offset) { #if CYTHON_COMPILING_IN_CPYTHON dictptr = (likely(offset > 0)) ? (PyObject **) ((char *)obj + offset) : _PyObject_GetDictPtr(obj); #else dictptr = _PyObject_GetDictPtr(obj); #endif } return (dictptr && *dictptr) ? __PYX_GET_DICT_VERSION(*dictptr) : 0; } static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version) { PyObject *dict = Py_TYPE(obj)->tp_dict; if (unlikely(!dict) || unlikely(tp_dict_version != __PYX_GET_DICT_VERSION(dict))) return 0; return obj_dict_version == __Pyx_get_object_dict_version(obj); } #endif /* GetModuleGlobalName */ #if CYTHON_USE_DICT_VERSIONS static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value) #else static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name) #endif { PyObject *result; #if CYTHON_COMPILING_IN_LIMITED_API if (unlikely(!__pyx_m)) { if (!PyErr_Occurred()) PyErr_SetNone(PyExc_NameError); return NULL; } result = PyObject_GetAttr(__pyx_m, name); if (likely(result)) { return result; } PyErr_Clear(); #elif CYTHON_AVOID_BORROWED_REFS || CYTHON_AVOID_THREAD_UNSAFE_BORROWED_REFS if (unlikely(__Pyx_PyDict_GetItemRef(__pyx_mstate_global->__pyx_d, name, &result) == -1)) PyErr_Clear(); __PYX_UPDATE_DICT_CACHE(__pyx_mstate_global->__pyx_d, result, *dict_cached_value, *dict_version) if (likely(result)) { return result; } #else result = _PyDict_GetItem_KnownHash(__pyx_mstate_global->__pyx_d, name, ((PyASCIIObject *) name)->hash); __PYX_UPDATE_DICT_CACHE(__pyx_mstate_global->__pyx_d, result, *dict_cached_value, *dict_version) if (likely(result)) { return __Pyx_NewRef(result); } PyErr_Clear(); #endif return __Pyx_GetBuiltinName(name); } /* JoinPyUnicode */ static PyObject* __Pyx_PyUnicode_Join(PyObject** values, Py_ssize_t value_count, Py_ssize_t result_ulength, Py_UCS4 max_char) { #if CYTHON_USE_UNICODE_INTERNALS && CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS PyObject *result_uval; int result_ukind, kind_shift; Py_ssize_t i, char_pos; void *result_udata; if (max_char > 1114111) max_char = 1114111; result_uval = PyUnicode_New(result_ulength, max_char); if (unlikely(!result_uval)) return NULL; result_ukind = (max_char <= 255) ? PyUnicode_1BYTE_KIND : (max_char <= 65535) ? PyUnicode_2BYTE_KIND : PyUnicode_4BYTE_KIND; kind_shift = (result_ukind == PyUnicode_4BYTE_KIND) ? 2 : result_ukind - 1; result_udata = PyUnicode_DATA(result_uval); assert(kind_shift == 2 || kind_shift == 1 || kind_shift == 0); if (unlikely((PY_SSIZE_T_MAX >> kind_shift) - result_ulength < 0)) goto overflow; char_pos = 0; for (i=0; i < value_count; i++) { int ukind; Py_ssize_t ulength; void *udata; PyObject *uval = values[i]; #if !CYTHON_COMPILING_IN_LIMITED_API if (__Pyx_PyUnicode_READY(uval) == (-1)) goto bad; #endif ulength = __Pyx_PyUnicode_GET_LENGTH(uval); #if !CYTHON_ASSUME_SAFE_SIZE if (unlikely(ulength < 0)) goto bad; #endif if (unlikely(!ulength)) continue; if (unlikely((PY_SSIZE_T_MAX >> kind_shift) - ulength < char_pos)) goto overflow; ukind = __Pyx_PyUnicode_KIND(uval); udata = __Pyx_PyUnicode_DATA(uval); if (ukind == result_ukind) { memcpy((char *)result_udata + (char_pos << kind_shift), udata, (size_t) (ulength << kind_shift)); } else { #if PY_VERSION_HEX >= 0x030d0000 if (unlikely(PyUnicode_CopyCharacters(result_uval, char_pos, uval, 0, ulength) < 0)) goto bad; #elif CYTHON_COMPILING_IN_CPYTHON || defined(_PyUnicode_FastCopyCharacters) _PyUnicode_FastCopyCharacters(result_uval, char_pos, uval, 0, ulength); #else Py_ssize_t j; for (j=0; j < ulength; j++) { Py_UCS4 uchar = __Pyx_PyUnicode_READ(ukind, udata, j); __Pyx_PyUnicode_WRITE(result_ukind, result_udata, char_pos+j, uchar); } #endif } char_pos += ulength; } return result_uval; overflow: PyErr_SetString(PyExc_OverflowError, "join() result is too long for a Python string"); bad: Py_DECREF(result_uval); return NULL; #else Py_ssize_t i; PyObject *result = NULL; PyObject *value_tuple = PyTuple_New(value_count); if (unlikely(!value_tuple)) return NULL; CYTHON_UNUSED_VAR(max_char); CYTHON_UNUSED_VAR(result_ulength); for (i=0; i__pyx_empty_unicode, value_tuple); bad: Py_DECREF(value_tuple); return result; #endif } /* PyObjectVectorCallKwBuilder */ #if CYTHON_VECTORCALL static int __Pyx_VectorcallBuilder_AddArg(PyObject *key, PyObject *value, PyObject *builder, PyObject **args, int n) { (void)__Pyx_PyObject_FastCallDict; if (__Pyx_PyTuple_SET_ITEM(builder, n, key) != (0)) return -1; Py_INCREF(key); args[n] = value; return 0; } CYTHON_UNUSED static int __Pyx_VectorcallBuilder_AddArg_Check(PyObject *key, PyObject *value, PyObject *builder, PyObject **args, int n) { (void)__Pyx_VectorcallBuilder_AddArgStr; if (unlikely(!PyUnicode_Check(key))) { PyErr_SetString(PyExc_TypeError, "keywords must be strings"); return -1; } return __Pyx_VectorcallBuilder_AddArg(key, value, builder, args, n); } static int __Pyx_VectorcallBuilder_AddArgStr(const char *key, PyObject *value, PyObject *builder, PyObject **args, int n) { PyObject *pyKey = PyUnicode_FromString(key); if (!pyKey) return -1; return __Pyx_VectorcallBuilder_AddArg(pyKey, value, builder, args, n); } #else // CYTHON_VECTORCALL CYTHON_UNUSED static int __Pyx_VectorcallBuilder_AddArg_Check(PyObject *key, PyObject *value, PyObject *builder, CYTHON_UNUSED PyObject **args, CYTHON_UNUSED int n) { if (unlikely(!PyUnicode_Check(key))) { PyErr_SetString(PyExc_TypeError, "keywords must be strings"); return -1; } return PyDict_SetItem(builder, key, value); } #endif /* SliceObject */ static CYTHON_INLINE int __Pyx_PyObject_SetSlice(PyObject* obj, PyObject* value, Py_ssize_t cstart, Py_ssize_t cstop, PyObject** _py_start, PyObject** _py_stop, PyObject** _py_slice, int has_cstart, int has_cstop, CYTHON_UNUSED int wraparound) { __Pyx_TypeName obj_type_name; #if CYTHON_USE_TYPE_SLOTS PyMappingMethods* mp = Py_TYPE(obj)->tp_as_mapping; if (likely(mp && mp->mp_ass_subscript)) #endif { int result; PyObject *py_slice, *py_start, *py_stop; if (_py_slice) { py_slice = *_py_slice; } else { PyObject* owned_start = NULL; PyObject* owned_stop = NULL; if (_py_start) { py_start = *_py_start; } else { if (has_cstart) { owned_start = py_start = PyLong_FromSsize_t(cstart); if (unlikely(!py_start)) goto bad; } else py_start = Py_None; } if (_py_stop) { py_stop = *_py_stop; } else { if (has_cstop) { owned_stop = py_stop = PyLong_FromSsize_t(cstop); if (unlikely(!py_stop)) { Py_XDECREF(owned_start); goto bad; } } else py_stop = Py_None; } py_slice = PySlice_New(py_start, py_stop, Py_None); Py_XDECREF(owned_start); Py_XDECREF(owned_stop); if (unlikely(!py_slice)) goto bad; } #if CYTHON_USE_TYPE_SLOTS result = mp->mp_ass_subscript(obj, py_slice, value); #else result = value ? PyObject_SetItem(obj, py_slice, value) : PyObject_DelItem(obj, py_slice); #endif if (!_py_slice) { Py_DECREF(py_slice); } return result; } obj_type_name = __Pyx_PyType_GetFullyQualifiedName(Py_TYPE(obj)); PyErr_Format(PyExc_TypeError, "'" __Pyx_FMT_TYPENAME "' object does not support slice %.10s", obj_type_name, value ? "assignment" : "deletion"); __Pyx_DECREF_TypeName(obj_type_name); bad: return -1; } /* PyObjectVectorCallMethodKwBuilder */ #if !CYTHON_VECTORCALL || PY_VERSION_HEX < 0x03090000 static PyObject *__Pyx_Object_VectorcallMethod_CallFromBuilder(PyObject *name, PyObject *const *args, size_t nargsf, PyObject *kwnames) { PyObject *result; PyObject *obj = PyObject_GetAttr(args[0], name); if (unlikely(!obj)) return NULL; result = __Pyx_Object_Vectorcall_CallFromBuilder(obj, args+1, nargsf-1, kwnames); Py_DECREF(obj); return result; } #endif /* PyLongCompare */ static CYTHON_INLINE int __Pyx_PyLong_BoolEqObjC(PyObject *op1, PyObject *op2, long intval, long inplace) { CYTHON_MAYBE_UNUSED_VAR(intval); CYTHON_UNUSED_VAR(inplace); if (op1 == op2) { return 1; } #if CYTHON_USE_PYLONG_INTERNALS if (likely(PyLong_CheckExact(op1))) { int unequal; unsigned long uintval; Py_ssize_t size = __Pyx_PyLong_DigitCount(op1); const digit* digits = __Pyx_PyLong_Digits(op1); if (intval == 0) { return (__Pyx_PyLong_IsZero(op1) == 1); } else if (intval < 0) { if (__Pyx_PyLong_IsNonNeg(op1)) return 0; intval = -intval; } else { if (__Pyx_PyLong_IsNeg(op1)) return 0; } uintval = (unsigned long) intval; #if PyLong_SHIFT * 4 < SIZEOF_LONG*8 if (uintval >> (PyLong_SHIFT * 4)) { unequal = (size != 5) || (digits[0] != (uintval & (unsigned long) PyLong_MASK)) | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[4] != ((uintval >> (4 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)); } else #endif #if PyLong_SHIFT * 3 < SIZEOF_LONG*8 if (uintval >> (PyLong_SHIFT * 3)) { unequal = (size != 4) || (digits[0] != (uintval & (unsigned long) PyLong_MASK)) | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)); } else #endif #if PyLong_SHIFT * 2 < SIZEOF_LONG*8 if (uintval >> (PyLong_SHIFT * 2)) { unequal = (size != 3) || (digits[0] != (uintval & (unsigned long) PyLong_MASK)) | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)); } else #endif #if PyLong_SHIFT * 1 < SIZEOF_LONG*8 if (uintval >> (PyLong_SHIFT * 1)) { unequal = (size != 2) || (digits[0] != (uintval & (unsigned long) PyLong_MASK)) | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)); } else #endif unequal = (size != 1) || (((unsigned long) digits[0]) != (uintval & (unsigned long) PyLong_MASK)); return (unequal == 0); } #endif if (PyFloat_CheckExact(op1)) { const long b = intval; double a = __Pyx_PyFloat_AS_DOUBLE(op1); return ((double)a == (double)b); } return __Pyx_PyObject_IsTrueAndDecref( PyObject_RichCompare(op1, op2, Py_EQ)); } /* ExtTypeTest */ static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { __Pyx_TypeName obj_type_name; __Pyx_TypeName type_name; if (unlikely(!type)) { PyErr_SetString(PyExc_SystemError, "Missing type object"); return 0; } if (likely(__Pyx_TypeCheck(obj, type))) return 1; obj_type_name = __Pyx_PyType_GetFullyQualifiedName(Py_TYPE(obj)); type_name = __Pyx_PyType_GetFullyQualifiedName(type); PyErr_Format(PyExc_TypeError, "Cannot convert " __Pyx_FMT_TYPENAME " to " __Pyx_FMT_TYPENAME, obj_type_name, type_name); __Pyx_DECREF_TypeName(obj_type_name); __Pyx_DECREF_TypeName(type_name); return 0; } /* SliceObject */ static CYTHON_INLINE PyObject* __Pyx_PyObject_GetSlice(PyObject* obj, Py_ssize_t cstart, Py_ssize_t cstop, PyObject** _py_start, PyObject** _py_stop, PyObject** _py_slice, int has_cstart, int has_cstop, CYTHON_UNUSED int wraparound) { __Pyx_TypeName obj_type_name; #if CYTHON_USE_TYPE_SLOTS PyMappingMethods* mp = Py_TYPE(obj)->tp_as_mapping; if (likely(mp && mp->mp_subscript)) #endif { PyObject* result; PyObject *py_slice, *py_start, *py_stop; if (_py_slice) { py_slice = *_py_slice; } else { PyObject* owned_start = NULL; PyObject* owned_stop = NULL; if (_py_start) { py_start = *_py_start; } else { if (has_cstart) { owned_start = py_start = PyLong_FromSsize_t(cstart); if (unlikely(!py_start)) goto bad; } else py_start = Py_None; } if (_py_stop) { py_stop = *_py_stop; } else { if (has_cstop) { owned_stop = py_stop = PyLong_FromSsize_t(cstop); if (unlikely(!py_stop)) { Py_XDECREF(owned_start); goto bad; } } else py_stop = Py_None; } py_slice = PySlice_New(py_start, py_stop, Py_None); Py_XDECREF(owned_start); Py_XDECREF(owned_stop); if (unlikely(!py_slice)) goto bad; } #if CYTHON_USE_TYPE_SLOTS result = mp->mp_subscript(obj, py_slice); #else result = PyObject_GetItem(obj, py_slice); #endif if (!_py_slice) { Py_DECREF(py_slice); } return result; } obj_type_name = __Pyx_PyType_GetFullyQualifiedName(Py_TYPE(obj)); PyErr_Format(PyExc_TypeError, "'" __Pyx_FMT_TYPENAME "' object is unsliceable", obj_type_name); __Pyx_DECREF_TypeName(obj_type_name); bad: return NULL; } /* GetItemInt */ static PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { PyObject *r; if (unlikely(!j)) return NULL; r = PyObject_GetItem(o, j); Py_DECREF(j); return r; } static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, int wraparound, int boundscheck, int unsafe_shared) { CYTHON_MAYBE_UNUSED_VAR(unsafe_shared); #if CYTHON_ASSUME_SAFE_SIZE Py_ssize_t wrapped_i = i; if (wraparound & unlikely(i < 0)) { wrapped_i += PyList_GET_SIZE(o); } if ((CYTHON_AVOID_BORROWED_REFS || CYTHON_AVOID_THREAD_UNSAFE_BORROWED_REFS || !CYTHON_ASSUME_SAFE_MACROS)) { return __Pyx_PyList_GetItemRefFast(o, wrapped_i, unsafe_shared); } else if ((!boundscheck) || likely(__Pyx_is_valid_index(wrapped_i, PyList_GET_SIZE(o)))) { return __Pyx_NewRef(PyList_GET_ITEM(o, wrapped_i)); } return __Pyx_GetItemInt_Generic(o, PyLong_FromSsize_t(i)); #else (void)wraparound; (void)boundscheck; return PySequence_GetItem(o, i); #endif } static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, int wraparound, int boundscheck, int unsafe_shared) { CYTHON_MAYBE_UNUSED_VAR(unsafe_shared); #if CYTHON_ASSUME_SAFE_SIZE && CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS Py_ssize_t wrapped_i = i; if (wraparound & unlikely(i < 0)) { wrapped_i += PyTuple_GET_SIZE(o); } if ((!boundscheck) || likely(__Pyx_is_valid_index(wrapped_i, PyTuple_GET_SIZE(o)))) { return __Pyx_NewRef(PyTuple_GET_ITEM(o, wrapped_i)); } return __Pyx_GetItemInt_Generic(o, PyLong_FromSsize_t(i)); #else (void)wraparound; (void)boundscheck; return PySequence_GetItem(o, i); #endif } static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list, int wraparound, int boundscheck, int unsafe_shared) { CYTHON_MAYBE_UNUSED_VAR(unsafe_shared); #if CYTHON_ASSUME_SAFE_MACROS && CYTHON_ASSUME_SAFE_SIZE if (is_list || PyList_CheckExact(o)) { Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o); if ((CYTHON_AVOID_BORROWED_REFS || CYTHON_AVOID_THREAD_UNSAFE_BORROWED_REFS)) { return __Pyx_PyList_GetItemRefFast(o, n, unsafe_shared); } else if ((!boundscheck) || (likely(__Pyx_is_valid_index(n, PyList_GET_SIZE(o))))) { return __Pyx_NewRef(PyList_GET_ITEM(o, n)); } } else #if !CYTHON_AVOID_BORROWED_REFS if (PyTuple_CheckExact(o)) { Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o); if ((!boundscheck) || likely(__Pyx_is_valid_index(n, PyTuple_GET_SIZE(o)))) { return __Pyx_NewRef(PyTuple_GET_ITEM(o, n)); } } else #endif #endif #if CYTHON_USE_TYPE_SLOTS && !CYTHON_COMPILING_IN_PYPY { PyMappingMethods *mm = Py_TYPE(o)->tp_as_mapping; PySequenceMethods *sm = Py_TYPE(o)->tp_as_sequence; if (!is_list && mm && mm->mp_subscript) { PyObject *r, *key = PyLong_FromSsize_t(i); if (unlikely(!key)) return NULL; r = mm->mp_subscript(o, key); Py_DECREF(key); return r; } if (is_list || likely(sm && sm->sq_item)) { if (wraparound && unlikely(i < 0) && likely(sm->sq_length)) { Py_ssize_t l = sm->sq_length(o); if (likely(l >= 0)) { i += l; } else { if (!PyErr_ExceptionMatches(PyExc_OverflowError)) return NULL; PyErr_Clear(); } } return sm->sq_item(o, i); } } #else if (is_list || !PyMapping_Check(o)) { return PySequence_GetItem(o, i); } #endif (void)wraparound; (void)boundscheck; return __Pyx_GetItemInt_Generic(o, PyLong_FromSsize_t(i)); } /* RaiseClosureNameError */ static void __Pyx_RaiseClosureNameError(const char *varname) { PyErr_Format(PyExc_NameError, "free variable '%s' referenced before assignment in enclosing scope", varname); } /* dict_setdefault (used by FetchCommonType) */ static CYTHON_INLINE PyObject *__Pyx_PyDict_SetDefault(PyObject *d, PyObject *key, PyObject *default_value) { PyObject* value; #if __PYX_LIMITED_VERSION_HEX >= 0x030F0000 || (!CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4) PyDict_SetDefaultRef(d, key, default_value, &value); #elif CYTHON_COMPILING_IN_LIMITED_API && __PYX_LIMITED_VERSION_HEX >= 0x030C0000 PyObject *args[] = {d, key, default_value}; value = PyObject_VectorcallMethod(__pyx_mstate_global->__pyx_n_u_setdefault, args, 3 | PY_VECTORCALL_ARGUMENTS_OFFSET, NULL); #elif CYTHON_COMPILING_IN_LIMITED_API value = PyObject_CallMethodObjArgs(d, __pyx_mstate_global->__pyx_n_u_setdefault, key, default_value, NULL); #else value = PyDict_SetDefault(d, key, default_value); if (unlikely(!value)) return NULL; Py_INCREF(value); #endif return value; } /* LimitedApiGetTypeDict (used by SetItemOnTypeDict) */ #if CYTHON_COMPILING_IN_LIMITED_API static Py_ssize_t __Pyx_GetTypeDictOffset(void) { PyObject *tp_dictoffset_o; Py_ssize_t tp_dictoffset; tp_dictoffset_o = PyObject_GetAttrString((PyObject*)(&PyType_Type), "__dictoffset__"); if (unlikely(!tp_dictoffset_o)) return -1; tp_dictoffset = PyLong_AsSsize_t(tp_dictoffset_o); Py_DECREF(tp_dictoffset_o); if (unlikely(tp_dictoffset == 0)) { PyErr_SetString( PyExc_TypeError, "'type' doesn't have a dictoffset"); return -1; } else if (unlikely(tp_dictoffset < 0)) { PyErr_SetString( PyExc_TypeError, "'type' has an unexpected negative dictoffset. " "Please report this as Cython bug"); return -1; } return tp_dictoffset; } static PyObject *__Pyx_GetTypeDict(PyTypeObject *tp) { static Py_ssize_t tp_dictoffset = 0; if (unlikely(tp_dictoffset == 0)) { tp_dictoffset = __Pyx_GetTypeDictOffset(); if (unlikely(tp_dictoffset == -1 && PyErr_Occurred())) { tp_dictoffset = 0; // try again next time? return NULL; } } return *(PyObject**)((char*)tp + tp_dictoffset); } #endif /* SetItemOnTypeDict (used by FixUpExtensionType) */ static int __Pyx__SetItemOnTypeDict(PyTypeObject *tp, PyObject *k, PyObject *v) { int result; PyObject *tp_dict; #if CYTHON_COMPILING_IN_LIMITED_API tp_dict = __Pyx_GetTypeDict(tp); if (unlikely(!tp_dict)) return -1; #else tp_dict = tp->tp_dict; #endif result = PyDict_SetItem(tp_dict, k, v); if (likely(!result)) { PyType_Modified(tp); if (unlikely(PyObject_HasAttr(v, __pyx_mstate_global->__pyx_n_u_set_name))) { PyObject *setNameResult = PyObject_CallMethodObjArgs(v, __pyx_mstate_global->__pyx_n_u_set_name, (PyObject *) tp, k, NULL); if (!setNameResult) return -1; Py_DECREF(setNameResult); } } return result; } /* FixUpExtensionType (used by FetchCommonType) */ static int __Pyx_fix_up_extension_type_from_spec(PyType_Spec *spec, PyTypeObject *type) { #if __PYX_LIMITED_VERSION_HEX > 0x030900B1 CYTHON_UNUSED_VAR(spec); CYTHON_UNUSED_VAR(type); CYTHON_UNUSED_VAR(__Pyx__SetItemOnTypeDict); #else const PyType_Slot *slot = spec->slots; int changed = 0; #if !CYTHON_COMPILING_IN_LIMITED_API while (slot && slot->slot && slot->slot != Py_tp_members) slot++; if (slot && slot->slot == Py_tp_members) { #if !CYTHON_COMPILING_IN_CPYTHON const #endif // !CYTHON_COMPILING_IN_CPYTHON) PyMemberDef *memb = (PyMemberDef*) slot->pfunc; while (memb && memb->name) { if (memb->name[0] == '_' && memb->name[1] == '_') { if (strcmp(memb->name, "__weaklistoffset__") == 0) { assert(memb->type == T_PYSSIZET); assert(memb->flags == READONLY); type->tp_weaklistoffset = memb->offset; changed = 1; } else if (strcmp(memb->name, "__dictoffset__") == 0) { assert(memb->type == T_PYSSIZET); assert(memb->flags == READONLY); type->tp_dictoffset = memb->offset; changed = 1; } #if CYTHON_METH_FASTCALL else if (strcmp(memb->name, "__vectorcalloffset__") == 0) { assert(memb->type == T_PYSSIZET); assert(memb->flags == READONLY); type->tp_vectorcall_offset = memb->offset; changed = 1; } #endif // CYTHON_METH_FASTCALL #if !CYTHON_COMPILING_IN_PYPY else if (strcmp(memb->name, "__module__") == 0) { PyObject *descr; assert(memb->type == T_OBJECT); assert(memb->flags == 0 || memb->flags == READONLY); descr = PyDescr_NewMember(type, memb); if (unlikely(!descr)) return -1; int set_item_result = PyDict_SetItem(type->tp_dict, PyDescr_NAME(descr), descr); Py_DECREF(descr); if (unlikely(set_item_result < 0)) { return -1; } changed = 1; } #endif // !CYTHON_COMPILING_IN_PYPY } memb++; } } #endif // !CYTHON_COMPILING_IN_LIMITED_API #if !CYTHON_COMPILING_IN_PYPY slot = spec->slots; while (slot && slot->slot && slot->slot != Py_tp_getset) slot++; if (slot && slot->slot == Py_tp_getset) { PyGetSetDef *getset = (PyGetSetDef*) slot->pfunc; while (getset && getset->name) { if (getset->name[0] == '_' && getset->name[1] == '_' && strcmp(getset->name, "__module__") == 0) { PyObject *descr = PyDescr_NewGetSet(type, getset); if (unlikely(!descr)) return -1; #if CYTHON_COMPILING_IN_LIMITED_API PyObject *pyname = PyUnicode_FromString(getset->name); if (unlikely(!pyname)) { Py_DECREF(descr); return -1; } int set_item_result = __Pyx_SetItemOnTypeDict(type, pyname, descr); Py_DECREF(pyname); #else CYTHON_UNUSED_VAR(__Pyx__SetItemOnTypeDict); int set_item_result = PyDict_SetItem(type->tp_dict, PyDescr_NAME(descr), descr); #endif Py_DECREF(descr); if (unlikely(set_item_result < 0)) { return -1; } changed = 1; } ++getset; } } #else CYTHON_UNUSED_VAR(__Pyx__SetItemOnTypeDict); #endif // !CYTHON_COMPILING_IN_PYPY if (changed) PyType_Modified(type); #endif // PY_VERSION_HEX > 0x030900B1 return 0; } /* AddModuleRef (used by FetchSharedCythonModule) */ #if CYTHON_COMPILING_IN_CPYTHON_FREETHREADING static PyObject *__Pyx_PyImport_AddModuleObjectRef(PyObject *name) { PyObject *module_dict = PyImport_GetModuleDict(); PyObject *m; if (PyMapping_GetOptionalItem(module_dict, name, &m) < 0) { return NULL; } if (m != NULL && PyModule_Check(m)) { return m; } Py_XDECREF(m); m = PyModule_NewObject(name); if (m == NULL) return NULL; if (PyDict_CheckExact(module_dict)) { PyObject *new_m; (void)PyDict_SetDefaultRef(module_dict, name, m, &new_m); Py_DECREF(m); return new_m; } else { if (PyObject_SetItem(module_dict, name, m) != 0) { Py_DECREF(m); return NULL; } return m; } } static PyObject *__Pyx_PyImport_AddModuleRef(const char *name) { PyObject *py_name = PyUnicode_FromString(name); if (!py_name) return NULL; PyObject *module = __Pyx_PyImport_AddModuleObjectRef(py_name); Py_DECREF(py_name); return module; } #elif __PYX_LIMITED_VERSION_HEX >= 0x030d0000 #define __Pyx_PyImport_AddModuleRef(name) PyImport_AddModuleRef(name) #else static PyObject *__Pyx_PyImport_AddModuleRef(const char *name) { PyObject *module = PyImport_AddModule(name); Py_XINCREF(module); return module; } #endif /* FetchSharedCythonModule (used by FetchCommonType) */ static PyObject *__Pyx_FetchSharedCythonABIModule(void) { return __Pyx_PyImport_AddModuleRef(__PYX_ABI_MODULE_NAME); } /* FetchCommonType (used by CommonTypesMetaclass) */ #if __PYX_LIMITED_VERSION_HEX < 0x030C0000 static PyObject* __Pyx_PyType_FromMetaclass(PyTypeObject *metaclass, PyObject *module, PyType_Spec *spec, PyObject *bases) { PyObject *result = __Pyx_PyType_FromModuleAndSpec(module, spec, bases); if (result && metaclass) { PyObject *old_tp = (PyObject*)Py_TYPE(result); Py_INCREF((PyObject*)metaclass); #if __PYX_LIMITED_VERSION_HEX >= 0x03090000 Py_SET_TYPE(result, metaclass); #else result->ob_type = metaclass; #endif Py_DECREF(old_tp); } return result; } #else #define __Pyx_PyType_FromMetaclass(me, mo, s, b) PyType_FromMetaclass(me, mo, s, b) #endif static int __Pyx_VerifyCachedType(PyObject *cached_type, const char *name, Py_ssize_t expected_basicsize) { Py_ssize_t basicsize; if (!PyType_Check(cached_type)) { PyErr_Format(PyExc_TypeError, "Shared Cython type %.200s is not a type object", name); return -1; } if (expected_basicsize == 0) { return 0; // size is inherited, nothing useful to check } #if CYTHON_COMPILING_IN_LIMITED_API PyObject *py_basicsize; py_basicsize = PyObject_GetAttrString(cached_type, "__basicsize__"); if (unlikely(!py_basicsize)) return -1; basicsize = PyLong_AsSsize_t(py_basicsize); Py_DECREF(py_basicsize); py_basicsize = NULL; if (unlikely(basicsize == (Py_ssize_t)-1) && PyErr_Occurred()) return -1; #else basicsize = ((PyTypeObject*) cached_type)->tp_basicsize; #endif if (basicsize != expected_basicsize) { PyErr_Format(PyExc_TypeError, "Shared Cython type %.200s has the wrong size, try recompiling", name); return -1; } return 0; } static PyTypeObject *__Pyx_FetchCommonTypeFromSpec(PyTypeObject *metaclass, PyObject *module, PyType_Spec *spec, PyObject *bases) { PyObject *abi_module = NULL, *cached_type = NULL, *abi_module_dict, *new_cached_type, *py_object_name; int get_item_ref_result; const char* object_name = strrchr(spec->name, '.'); object_name = object_name ? object_name+1 : spec->name; py_object_name = PyUnicode_FromString(object_name); if (!py_object_name) return NULL; abi_module = __Pyx_FetchSharedCythonABIModule(); if (!abi_module) goto done; abi_module_dict = PyModule_GetDict(abi_module); if (!abi_module_dict) goto done; get_item_ref_result = __Pyx_PyDict_GetItemRef(abi_module_dict, py_object_name, &cached_type); if (get_item_ref_result == 1) { if (__Pyx_VerifyCachedType( cached_type, object_name, spec->basicsize) < 0) { goto bad; } goto done; } else if (unlikely(get_item_ref_result == -1)) { goto bad; } cached_type = __Pyx_PyType_FromMetaclass( metaclass, CYTHON_USE_MODULE_STATE ? module : abi_module, spec, bases); if (unlikely(!cached_type)) goto bad; if (unlikely(__Pyx_fix_up_extension_type_from_spec(spec, (PyTypeObject *) cached_type) < 0)) goto bad; new_cached_type = __Pyx_PyDict_SetDefault(abi_module_dict, py_object_name, cached_type); if (unlikely(new_cached_type != cached_type)) { if (unlikely(!new_cached_type)) goto bad; Py_DECREF(cached_type); cached_type = new_cached_type; if (__Pyx_VerifyCachedType( cached_type, object_name, spec->basicsize) < 0) { goto bad; } goto done; } else { Py_DECREF(new_cached_type); } done: Py_XDECREF(abi_module); Py_DECREF(py_object_name); assert(cached_type == NULL || PyType_Check(cached_type)); return (PyTypeObject *) cached_type; bad: Py_XDECREF(cached_type); cached_type = NULL; goto done; } /* CommonTypesMetaclass (used by CythonFunctionShared) */ static PyObject* __pyx_CommonTypesMetaclass_get_module(CYTHON_UNUSED PyObject *self, CYTHON_UNUSED void* context) { return PyUnicode_FromString(__PYX_ABI_MODULE_NAME); } #if __PYX_LIMITED_VERSION_HEX < 0x030A0000 static PyObject* __pyx_CommonTypesMetaclass_call(CYTHON_UNUSED PyObject *self, CYTHON_UNUSED PyObject *args, CYTHON_UNUSED PyObject *kwds) { PyErr_SetString(PyExc_TypeError, "Cannot instantiate Cython internal types"); return NULL; } static int __pyx_CommonTypesMetaclass_setattr(CYTHON_UNUSED PyObject *self, CYTHON_UNUSED PyObject *attr, CYTHON_UNUSED PyObject *value) { PyErr_SetString(PyExc_TypeError, "Cython internal types are immutable"); return -1; } #endif static PyGetSetDef __pyx_CommonTypesMetaclass_getset[] = { {"__module__", __pyx_CommonTypesMetaclass_get_module, NULL, NULL, NULL}, {0, 0, 0, 0, 0} }; static PyType_Slot __pyx_CommonTypesMetaclass_slots[] = { {Py_tp_getset, (void *)__pyx_CommonTypesMetaclass_getset}, #if __PYX_LIMITED_VERSION_HEX < 0x030A0000 {Py_tp_call, (void*)__pyx_CommonTypesMetaclass_call}, {Py_tp_new, (void*)__pyx_CommonTypesMetaclass_call}, {Py_tp_setattro, (void*)__pyx_CommonTypesMetaclass_setattr}, #endif {0, 0} }; static PyType_Spec __pyx_CommonTypesMetaclass_spec = { __PYX_TYPE_MODULE_PREFIX "_common_types_metatype", 0, 0, Py_TPFLAGS_IMMUTABLETYPE | Py_TPFLAGS_DISALLOW_INSTANTIATION | Py_TPFLAGS_DEFAULT, __pyx_CommonTypesMetaclass_slots }; static int __pyx_CommonTypesMetaclass_init(PyObject *module) { __pyx_mstatetype *mstate = __Pyx_PyModule_GetState(module); PyObject *bases = PyTuple_Pack(1, &PyType_Type); if (unlikely(!bases)) { return -1; } mstate->__pyx_CommonTypesMetaclassType = __Pyx_FetchCommonTypeFromSpec(NULL, module, &__pyx_CommonTypesMetaclass_spec, bases); Py_DECREF(bases); if (unlikely(mstate->__pyx_CommonTypesMetaclassType == NULL)) { return -1; } return 0; } /* CallTypeTraverse (used by CythonFunctionShared) */ #if !CYTHON_USE_TYPE_SPECS || (!CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x03090000) #else static int __Pyx_call_type_traverse(PyObject *o, int always_call, visitproc visit, void *arg) { #if CYTHON_COMPILING_IN_LIMITED_API && __PYX_LIMITED_VERSION_HEX < 0x03090000 if (__Pyx_get_runtime_version() < 0x03090000) return 0; #endif if (!always_call) { PyTypeObject *base = __Pyx_PyObject_GetSlot(o, tp_base, PyTypeObject*); unsigned long flags = PyType_GetFlags(base); if (flags & Py_TPFLAGS_HEAPTYPE) { return 0; } } Py_VISIT((PyObject*)Py_TYPE(o)); return 0; } #endif /* PyMethodNew (used by CythonFunctionShared) */ #if CYTHON_COMPILING_IN_LIMITED_API static PyObject *__Pyx_PyMethod_New(PyObject *func, PyObject *self, PyObject *typ) { PyObject *result; CYTHON_UNUSED_VAR(typ); if (!self) return __Pyx_NewRef(func); #if __PYX_LIMITED_VERSION_HEX >= 0x030C0000 { PyObject *args[] = {func, self}; result = PyObject_Vectorcall(__pyx_mstate_global->__Pyx_CachedMethodType, args, 2, NULL); } #else result = PyObject_CallFunctionObjArgs(__pyx_mstate_global->__Pyx_CachedMethodType, func, self, NULL); #endif return result; } #else static PyObject *__Pyx_PyMethod_New(PyObject *func, PyObject *self, PyObject *typ) { CYTHON_UNUSED_VAR(typ); if (!self) return __Pyx_NewRef(func); return PyMethod_New(func, self); } #endif /* PyVectorcallFastCallDict (used by CythonFunctionShared) */ #if CYTHON_METH_FASTCALL && CYTHON_VECTORCALL static PyObject *__Pyx_PyVectorcall_FastCallDict_kw(PyObject *func, __pyx_vectorcallfunc vc, PyObject *const *args, size_t nargs, PyObject *kw) { PyObject *res = NULL; PyObject *kwnames; PyObject **newargs; PyObject **kwvalues; Py_ssize_t i; #if CYTHON_AVOID_BORROWED_REFS PyObject *pos; #else Py_ssize_t pos; #endif size_t j; PyObject *key, *value; unsigned long keys_are_strings; #if !CYTHON_ASSUME_SAFE_SIZE Py_ssize_t nkw = PyDict_Size(kw); if (unlikely(nkw == -1)) return NULL; #else Py_ssize_t nkw = PyDict_GET_SIZE(kw); #endif newargs = (PyObject **)PyMem_Malloc((nargs + (size_t)nkw) * sizeof(args[0])); if (unlikely(newargs == NULL)) { PyErr_NoMemory(); return NULL; } for (j = 0; j < nargs; j++) newargs[j] = args[j]; kwnames = PyTuple_New(nkw); if (unlikely(kwnames == NULL)) { PyMem_Free(newargs); return NULL; } kwvalues = newargs + nargs; pos = 0; i = 0; keys_are_strings = Py_TPFLAGS_UNICODE_SUBCLASS; while (__Pyx_PyDict_NextRef(kw, &pos, &key, &value)) { keys_are_strings &= #if CYTHON_COMPILING_IN_LIMITED_API PyType_GetFlags(Py_TYPE(key)); #else Py_TYPE(key)->tp_flags; #endif #if !CYTHON_ASSUME_SAFE_MACROS if (unlikely(PyTuple_SetItem(kwnames, i, key) < 0)) goto cleanup; #else PyTuple_SET_ITEM(kwnames, i, key); #endif kwvalues[i] = value; i++; } if (unlikely(!keys_are_strings)) { PyErr_SetString(PyExc_TypeError, "keywords must be strings"); goto cleanup; } res = vc(func, newargs, nargs, kwnames); cleanup: #if CYTHON_AVOID_BORROWED_REFS Py_DECREF(pos); #endif Py_DECREF(kwnames); for (i = 0; i < nkw; i++) Py_DECREF(kwvalues[i]); PyMem_Free(newargs); return res; } static CYTHON_INLINE PyObject *__Pyx_PyVectorcall_FastCallDict(PyObject *func, __pyx_vectorcallfunc vc, PyObject *const *args, size_t nargs, PyObject *kw) { Py_ssize_t kw_size = likely(kw == NULL) ? 0 : #if !CYTHON_ASSUME_SAFE_SIZE PyDict_Size(kw); #else PyDict_GET_SIZE(kw); #endif if (kw_size == 0) { return vc(func, args, nargs, NULL); } #if !CYTHON_ASSUME_SAFE_SIZE else if (unlikely(kw_size == -1)) { return NULL; } #endif return __Pyx_PyVectorcall_FastCallDict_kw(func, vc, args, nargs, kw); } #endif /* CythonFunctionShared (used by CythonFunction) */ #if CYTHON_COMPILING_IN_LIMITED_API static CYTHON_INLINE int __Pyx__IsSameCyOrCFunctionNoMethod(PyObject *func, void (*cfunc)(void)) { if (__Pyx_CyFunction_Check(func)) { return PyCFunction_GetFunction(((__pyx_CyFunctionObject*)func)->func) == (PyCFunction) cfunc; } else if (PyCFunction_Check(func)) { return PyCFunction_GetFunction(func) == (PyCFunction) cfunc; } return 0; } static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void (*cfunc)(void)) { if ((PyObject*)Py_TYPE(func) == __pyx_mstate_global->__Pyx_CachedMethodType) { int result; PyObject *newFunc = PyObject_GetAttr(func, __pyx_mstate_global->__pyx_n_u_func); if (unlikely(!newFunc)) { PyErr_Clear(); // It's only an optimization, so don't throw an error return 0; } result = __Pyx__IsSameCyOrCFunctionNoMethod(newFunc, cfunc); Py_DECREF(newFunc); return result; } return __Pyx__IsSameCyOrCFunctionNoMethod(func, cfunc); } #else static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void (*cfunc)(void)) { if (PyMethod_Check(func)) { func = PyMethod_GET_FUNCTION(func); } return __Pyx_CyOrPyCFunction_Check(func) && __Pyx_CyOrPyCFunction_GET_FUNCTION(func) == (PyCFunction) cfunc; } #endif static CYTHON_INLINE void __Pyx__CyFunction_SetClassObj(__pyx_CyFunctionObject* f, PyObject* classobj) { #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API __Pyx_Py_XDECREF_SET( __Pyx_CyFunction_GetClassObj(f), ((classobj) ? __Pyx_NewRef(classobj) : NULL)); #else __Pyx_Py_XDECREF_SET( ((PyCMethodObject *) (f))->mm_class, (PyTypeObject*)((classobj) ? __Pyx_NewRef(classobj) : NULL)); #endif } static PyObject * __Pyx_CyFunction_get_doc_locked(__pyx_CyFunctionObject *op) { if (unlikely(op->func_doc == NULL)) { #if CYTHON_COMPILING_IN_LIMITED_API op->func_doc = PyObject_GetAttrString(op->func, "__doc__"); if (unlikely(!op->func_doc)) return NULL; #else if (((PyCFunctionObject*)op)->m_ml->ml_doc) { op->func_doc = PyUnicode_FromString(((PyCFunctionObject*)op)->m_ml->ml_doc); if (unlikely(op->func_doc == NULL)) return NULL; } else { Py_INCREF(Py_None); return Py_None; } #endif } Py_INCREF(op->func_doc); return op->func_doc; } static PyObject * __Pyx_CyFunction_get_doc(__pyx_CyFunctionObject *op, void *closure) { PyObject *result; CYTHON_UNUSED_VAR(closure); __Pyx_BEGIN_CRITICAL_SECTION(op); result = __Pyx_CyFunction_get_doc_locked(op); __Pyx_END_CRITICAL_SECTION(); return result; } static int __Pyx_CyFunction_set_doc(__pyx_CyFunctionObject *op, PyObject *value, void *context) { CYTHON_UNUSED_VAR(context); if (value == NULL) { value = Py_None; } Py_INCREF(value); __Pyx_BEGIN_CRITICAL_SECTION(op); __Pyx_Py_XDECREF_SET(op->func_doc, value); __Pyx_END_CRITICAL_SECTION(); return 0; } static PyObject * __Pyx_CyFunction_get_name_locked(__pyx_CyFunctionObject *op) { if (unlikely(op->func_name == NULL)) { #if CYTHON_COMPILING_IN_LIMITED_API op->func_name = PyObject_GetAttrString(op->func, "__name__"); #else op->func_name = PyUnicode_InternFromString(((PyCFunctionObject*)op)->m_ml->ml_name); #endif if (unlikely(op->func_name == NULL)) return NULL; } Py_INCREF(op->func_name); return op->func_name; } static PyObject * __Pyx_CyFunction_get_name(__pyx_CyFunctionObject *op, void *context) { PyObject *result = NULL; CYTHON_UNUSED_VAR(context); __Pyx_BEGIN_CRITICAL_SECTION(op); result = __Pyx_CyFunction_get_name_locked(op); __Pyx_END_CRITICAL_SECTION(); return result; } static int __Pyx_CyFunction_set_name(__pyx_CyFunctionObject *op, PyObject *value, void *context) { CYTHON_UNUSED_VAR(context); if (unlikely(value == NULL || !PyUnicode_Check(value))) { PyErr_SetString(PyExc_TypeError, "__name__ must be set to a string object"); return -1; } Py_INCREF(value); __Pyx_BEGIN_CRITICAL_SECTION(op); __Pyx_Py_XDECREF_SET(op->func_name, value); __Pyx_END_CRITICAL_SECTION(); return 0; } static PyObject * __Pyx_CyFunction_get_qualname(__pyx_CyFunctionObject *op, void *context) { CYTHON_UNUSED_VAR(context); PyObject *result; __Pyx_BEGIN_CRITICAL_SECTION(op); Py_INCREF(op->func_qualname); result = op->func_qualname; __Pyx_END_CRITICAL_SECTION(); return result; } static int __Pyx_CyFunction_set_qualname(__pyx_CyFunctionObject *op, PyObject *value, void *context) { CYTHON_UNUSED_VAR(context); if (unlikely(value == NULL || !PyUnicode_Check(value))) { PyErr_SetString(PyExc_TypeError, "__qualname__ must be set to a string object"); return -1; } Py_INCREF(value); __Pyx_BEGIN_CRITICAL_SECTION(op); __Pyx_Py_XDECREF_SET(op->func_qualname, value); __Pyx_END_CRITICAL_SECTION(); return 0; } #if CYTHON_COMPILING_IN_LIMITED_API && __PYX_LIMITED_VERSION_HEX < 0x030A0000 static PyObject * __Pyx_CyFunction_get_dict(__pyx_CyFunctionObject *op, void *context) { CYTHON_UNUSED_VAR(context); if (unlikely(op->func_dict == NULL)) { op->func_dict = PyDict_New(); if (unlikely(op->func_dict == NULL)) return NULL; } Py_INCREF(op->func_dict); return op->func_dict; } #endif static PyObject * __Pyx_CyFunction_get_globals(__pyx_CyFunctionObject *op, void *context) { CYTHON_UNUSED_VAR(context); Py_INCREF(op->func_globals); return op->func_globals; } static PyObject * __Pyx_CyFunction_get_closure(__pyx_CyFunctionObject *op, void *context) { CYTHON_UNUSED_VAR(op); CYTHON_UNUSED_VAR(context); Py_INCREF(Py_None); return Py_None; } static PyObject * __Pyx_CyFunction_get_code(__pyx_CyFunctionObject *op, void *context) { PyObject* result = (op->func_code) ? op->func_code : Py_None; CYTHON_UNUSED_VAR(context); Py_INCREF(result); return result; } static int __Pyx_CyFunction_init_defaults(__pyx_CyFunctionObject *op) { int result = 0; PyObject *res = op->defaults_getter((PyObject *) op); if (unlikely(!res)) return -1; #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS op->defaults_tuple = PyTuple_GET_ITEM(res, 0); Py_INCREF(op->defaults_tuple); op->defaults_kwdict = PyTuple_GET_ITEM(res, 1); Py_INCREF(op->defaults_kwdict); #else op->defaults_tuple = __Pyx_PySequence_ITEM(res, 0); if (unlikely(!op->defaults_tuple)) result = -1; else { op->defaults_kwdict = __Pyx_PySequence_ITEM(res, 1); if (unlikely(!op->defaults_kwdict)) result = -1; } #endif Py_DECREF(res); return result; } static int __Pyx_CyFunction_set_defaults(__pyx_CyFunctionObject *op, PyObject* value, void *context) { CYTHON_UNUSED_VAR(context); if (!value) { value = Py_None; } else if (unlikely(value != Py_None && !PyTuple_Check(value))) { PyErr_SetString(PyExc_TypeError, "__defaults__ must be set to a tuple object"); return -1; } PyErr_WarnEx(PyExc_RuntimeWarning, "changes to cyfunction.__defaults__ will not " "currently affect the values used in function calls", 1); Py_INCREF(value); __Pyx_BEGIN_CRITICAL_SECTION(op); __Pyx_Py_XDECREF_SET(op->defaults_tuple, value); __Pyx_END_CRITICAL_SECTION(); return 0; } static PyObject * __Pyx_CyFunction_get_defaults_locked(__pyx_CyFunctionObject *op) { PyObject* result = op->defaults_tuple; if (unlikely(!result)) { if (op->defaults_getter) { if (unlikely(__Pyx_CyFunction_init_defaults(op) < 0)) return NULL; result = op->defaults_tuple; } else { result = Py_None; } } Py_INCREF(result); return result; } static PyObject * __Pyx_CyFunction_get_defaults(__pyx_CyFunctionObject *op, void *context) { PyObject* result = NULL; CYTHON_UNUSED_VAR(context); __Pyx_BEGIN_CRITICAL_SECTION(op); result = __Pyx_CyFunction_get_defaults_locked(op); __Pyx_END_CRITICAL_SECTION(); return result; } static int __Pyx_CyFunction_set_kwdefaults(__pyx_CyFunctionObject *op, PyObject* value, void *context) { CYTHON_UNUSED_VAR(context); if (!value) { value = Py_None; } else if (unlikely(value != Py_None && !PyDict_Check(value))) { PyErr_SetString(PyExc_TypeError, "__kwdefaults__ must be set to a dict object"); return -1; } PyErr_WarnEx(PyExc_RuntimeWarning, "changes to cyfunction.__kwdefaults__ will not " "currently affect the values used in function calls", 1); Py_INCREF(value); __Pyx_BEGIN_CRITICAL_SECTION(op); __Pyx_Py_XDECREF_SET(op->defaults_kwdict, value); __Pyx_END_CRITICAL_SECTION(); return 0; } static PyObject * __Pyx_CyFunction_get_kwdefaults_locked(__pyx_CyFunctionObject *op) { PyObject* result = op->defaults_kwdict; if (unlikely(!result)) { if (op->defaults_getter) { if (unlikely(__Pyx_CyFunction_init_defaults(op) < 0)) return NULL; result = op->defaults_kwdict; } else { result = Py_None; } } Py_INCREF(result); return result; } static PyObject * __Pyx_CyFunction_get_kwdefaults(__pyx_CyFunctionObject *op, void *context) { PyObject* result; CYTHON_UNUSED_VAR(context); __Pyx_BEGIN_CRITICAL_SECTION(op); result = __Pyx_CyFunction_get_kwdefaults_locked(op); __Pyx_END_CRITICAL_SECTION(); return result; } static int __Pyx_CyFunction_set_annotations(__pyx_CyFunctionObject *op, PyObject* value, void *context) { CYTHON_UNUSED_VAR(context); if (!value || value == Py_None) { value = NULL; } else if (unlikely(!PyDict_Check(value))) { PyErr_SetString(PyExc_TypeError, "__annotations__ must be set to a dict object"); return -1; } Py_XINCREF(value); __Pyx_BEGIN_CRITICAL_SECTION(op); __Pyx_Py_XDECREF_SET(op->func_annotations, value); __Pyx_END_CRITICAL_SECTION(); return 0; } static PyObject * __Pyx_CyFunction_get_annotations_locked(__pyx_CyFunctionObject *op) { PyObject* result = op->func_annotations; if (unlikely(!result)) { result = PyDict_New(); if (unlikely(!result)) return NULL; op->func_annotations = result; } Py_INCREF(result); return result; } static PyObject * __Pyx_CyFunction_get_annotations(__pyx_CyFunctionObject *op, void *context) { PyObject *result; CYTHON_UNUSED_VAR(context); __Pyx_BEGIN_CRITICAL_SECTION(op); result = __Pyx_CyFunction_get_annotations_locked(op); __Pyx_END_CRITICAL_SECTION(); return result; } static PyObject * __Pyx_CyFunction_get_is_coroutine_value(__pyx_CyFunctionObject *op) { int is_coroutine = op->flags & __Pyx_CYFUNCTION_COROUTINE; if (is_coroutine) { PyObject *is_coroutine_value, *module, *fromlist, *marker = __pyx_mstate_global->__pyx_n_u_is_coroutine; fromlist = PyList_New(1); if (unlikely(!fromlist)) return NULL; Py_INCREF(marker); #if CYTHON_ASSUME_SAFE_MACROS PyList_SET_ITEM(fromlist, 0, marker); #else if (unlikely(PyList_SetItem(fromlist, 0, marker) < 0)) { Py_DECREF(marker); Py_DECREF(fromlist); return NULL; } #endif module = PyImport_ImportModuleLevelObject(__pyx_mstate_global->__pyx_n_u_asyncio_coroutines, NULL, NULL, fromlist, 0); Py_DECREF(fromlist); if (unlikely(!module)) goto ignore; is_coroutine_value = __Pyx_PyObject_GetAttrStr(module, marker); Py_DECREF(module); if (likely(is_coroutine_value)) { return is_coroutine_value; } ignore: PyErr_Clear(); } return __Pyx_PyBool_FromLong(is_coroutine); } static PyObject * __Pyx_CyFunction_get_is_coroutine(__pyx_CyFunctionObject *op, void *context) { PyObject *result; CYTHON_UNUSED_VAR(context); if (op->func_is_coroutine) { return __Pyx_NewRef(op->func_is_coroutine); } result = __Pyx_CyFunction_get_is_coroutine_value(op); if (unlikely(!result)) return NULL; __Pyx_BEGIN_CRITICAL_SECTION(op); if (op->func_is_coroutine) { Py_DECREF(result); result = __Pyx_NewRef(op->func_is_coroutine); } else { op->func_is_coroutine = __Pyx_NewRef(result); } __Pyx_END_CRITICAL_SECTION(); return result; } static void __Pyx_CyFunction_raise_argument_count_error(__pyx_CyFunctionObject *func, const char* message, Py_ssize_t size) { #if CYTHON_COMPILING_IN_LIMITED_API PyObject *py_name = __Pyx_CyFunction_get_name(func, NULL); if (!py_name) return; PyErr_Format(PyExc_TypeError, "%.200S() %s (%" CYTHON_FORMAT_SSIZE_T "d given)", py_name, message, size); Py_DECREF(py_name); #else const char* name = ((PyCFunctionObject*)func)->m_ml->ml_name; PyErr_Format(PyExc_TypeError, "%.200s() %s (%" CYTHON_FORMAT_SSIZE_T "d given)", name, message, size); #endif } static void __Pyx_CyFunction_raise_type_error(__pyx_CyFunctionObject *func, const char* message) { #if CYTHON_COMPILING_IN_LIMITED_API PyObject *py_name = __Pyx_CyFunction_get_name(func, NULL); if (!py_name) return; PyErr_Format(PyExc_TypeError, "%.200S() %s", py_name, message); Py_DECREF(py_name); #else const char* name = ((PyCFunctionObject*)func)->m_ml->ml_name; PyErr_Format(PyExc_TypeError, "%.200s() %s", name, message); #endif } #if CYTHON_COMPILING_IN_LIMITED_API static PyObject * __Pyx_CyFunction_get_module(__pyx_CyFunctionObject *op, void *context) { CYTHON_UNUSED_VAR(context); return PyObject_GetAttrString(op->func, "__module__"); } static int __Pyx_CyFunction_set_module(__pyx_CyFunctionObject *op, PyObject* value, void *context) { CYTHON_UNUSED_VAR(context); return PyObject_SetAttrString(op->func, "__module__", value); } #endif static PyGetSetDef __pyx_CyFunction_getsets[] = { {"func_doc", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0}, {"__doc__", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0}, {"func_name", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0}, {"__name__", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0}, {"__qualname__", (getter)__Pyx_CyFunction_get_qualname, (setter)__Pyx_CyFunction_set_qualname, 0, 0}, #if CYTHON_COMPILING_IN_LIMITED_API && __PYX_LIMITED_VERSION_HEX < 0x030A0000 {"func_dict", (getter)__Pyx_CyFunction_get_dict, (setter)PyObject_GenericSetDict, 0, 0}, {"__dict__", (getter)__Pyx_CyFunction_get_dict, (setter)PyObject_GenericSetDict, 0, 0}, #else {"func_dict", (getter)PyObject_GenericGetDict, (setter)PyObject_GenericSetDict, 0, 0}, {"__dict__", (getter)PyObject_GenericGetDict, (setter)PyObject_GenericSetDict, 0, 0}, #endif {"func_globals", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0}, {"__globals__", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0}, {"func_closure", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0}, {"__closure__", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0}, {"func_code", (getter)__Pyx_CyFunction_get_code, 0, 0, 0}, {"__code__", (getter)__Pyx_CyFunction_get_code, 0, 0, 0}, {"func_defaults", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0}, {"__defaults__", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0}, {"__kwdefaults__", (getter)__Pyx_CyFunction_get_kwdefaults, (setter)__Pyx_CyFunction_set_kwdefaults, 0, 0}, {"__annotations__", (getter)__Pyx_CyFunction_get_annotations, (setter)__Pyx_CyFunction_set_annotations, 0, 0}, {"_is_coroutine", (getter)__Pyx_CyFunction_get_is_coroutine, 0, 0, 0}, #if CYTHON_COMPILING_IN_LIMITED_API {"__module__", (getter)__Pyx_CyFunction_get_module, (setter)__Pyx_CyFunction_set_module, 0, 0}, #endif {0, 0, 0, 0, 0} }; static PyMemberDef __pyx_CyFunction_members[] = { #if !CYTHON_COMPILING_IN_LIMITED_API {"__module__", T_OBJECT, offsetof(PyCFunctionObject, m_module), 0, 0}, #endif #if PY_VERSION_HEX < 0x030C0000 || CYTHON_COMPILING_IN_LIMITED_API {"__dictoffset__", T_PYSSIZET, offsetof(__pyx_CyFunctionObject, func_dict), READONLY, 0}, #endif #if CYTHON_METH_FASTCALL #if CYTHON_COMPILING_IN_LIMITED_API {"__vectorcalloffset__", T_PYSSIZET, offsetof(__pyx_CyFunctionObject, func_vectorcall), READONLY, 0}, #else {"__vectorcalloffset__", T_PYSSIZET, offsetof(PyCFunctionObject, vectorcall), READONLY, 0}, #endif #if CYTHON_COMPILING_IN_LIMITED_API {"__weaklistoffset__", T_PYSSIZET, offsetof(__pyx_CyFunctionObject, func_weakreflist), READONLY, 0}, #else {"__weaklistoffset__", T_PYSSIZET, offsetof(PyCFunctionObject, m_weakreflist), READONLY, 0}, #endif #endif {0, 0, 0, 0, 0} }; static PyObject * __Pyx_CyFunction_reduce(__pyx_CyFunctionObject *m, PyObject *args) { PyObject *result = NULL; CYTHON_UNUSED_VAR(args); __Pyx_BEGIN_CRITICAL_SECTION(m); Py_INCREF(m->func_qualname); result = m->func_qualname; __Pyx_END_CRITICAL_SECTION(); return result; } static PyMethodDef __pyx_CyFunction_methods[] = { {"__reduce__", (PyCFunction)__Pyx_CyFunction_reduce, METH_VARARGS, 0}, {0, 0, 0, 0} }; #if CYTHON_COMPILING_IN_LIMITED_API #define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func_weakreflist) #else #define __Pyx_CyFunction_weakreflist(cyfunc) (((PyCFunctionObject*)cyfunc)->m_weakreflist) #endif static PyObject *__Pyx_CyFunction_Init(__pyx_CyFunctionObject *op, PyMethodDef *ml, int flags, PyObject* qualname, PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) { #if !CYTHON_COMPILING_IN_LIMITED_API PyCFunctionObject *cf = (PyCFunctionObject*) op; #endif if (unlikely(op == NULL)) return NULL; #if CYTHON_COMPILING_IN_LIMITED_API op->func = PyCFunction_NewEx(ml, (PyObject*)op, module); if (unlikely(!op->func)) return NULL; #endif op->flags = flags; __Pyx_CyFunction_weakreflist(op) = NULL; #if !CYTHON_COMPILING_IN_LIMITED_API cf->m_ml = ml; cf->m_self = (PyObject *) op; #endif Py_XINCREF(closure); op->func_closure = closure; #if !CYTHON_COMPILING_IN_LIMITED_API Py_XINCREF(module); cf->m_module = module; #endif #if PY_VERSION_HEX < 0x030C0000 || CYTHON_COMPILING_IN_LIMITED_API op->func_dict = NULL; #endif op->func_name = NULL; Py_INCREF(qualname); op->func_qualname = qualname; op->func_doc = NULL; #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API op->func_classobj = NULL; #else ((PyCMethodObject*)op)->mm_class = NULL; #endif op->func_globals = globals; Py_INCREF(op->func_globals); Py_XINCREF(code); op->func_code = code; op->defaults = NULL; op->defaults_tuple = NULL; op->defaults_kwdict = NULL; op->defaults_getter = NULL; op->func_annotations = NULL; op->func_is_coroutine = NULL; #if CYTHON_METH_FASTCALL switch (ml->ml_flags & (METH_VARARGS | METH_FASTCALL | METH_NOARGS | METH_O | METH_KEYWORDS | METH_METHOD)) { case METH_NOARGS: __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_NOARGS; break; case METH_O: __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_O; break; case METH_METHOD | METH_FASTCALL | METH_KEYWORDS: __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS_METHOD; break; case METH_FASTCALL | METH_KEYWORDS: __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS; break; case METH_VARARGS | METH_KEYWORDS: __Pyx_CyFunction_func_vectorcall(op) = NULL; break; default: PyErr_SetString(PyExc_SystemError, "Bad call flags for CyFunction"); Py_DECREF(op); return NULL; } #endif return (PyObject *) op; } static int __Pyx_CyFunction_clear(__pyx_CyFunctionObject *m) { Py_CLEAR(m->func_closure); #if CYTHON_COMPILING_IN_LIMITED_API Py_CLEAR(m->func); #else Py_CLEAR(((PyCFunctionObject*)m)->m_module); #endif #if PY_VERSION_HEX < 0x030C0000 || CYTHON_COMPILING_IN_LIMITED_API Py_CLEAR(m->func_dict); #elif PY_VERSION_HEX < 0x030d0000 _PyObject_ClearManagedDict((PyObject*)m); #else PyObject_ClearManagedDict((PyObject*)m); #endif Py_CLEAR(m->func_name); Py_CLEAR(m->func_qualname); Py_CLEAR(m->func_doc); Py_CLEAR(m->func_globals); Py_CLEAR(m->func_code); #if !CYTHON_COMPILING_IN_LIMITED_API #if PY_VERSION_HEX < 0x030900B1 Py_CLEAR(__Pyx_CyFunction_GetClassObj(m)); #else { PyObject *cls = (PyObject*) ((PyCMethodObject *) (m))->mm_class; ((PyCMethodObject *) (m))->mm_class = NULL; Py_XDECREF(cls); } #endif #endif Py_CLEAR(m->defaults_tuple); Py_CLEAR(m->defaults_kwdict); Py_CLEAR(m->func_annotations); Py_CLEAR(m->func_is_coroutine); Py_CLEAR(m->defaults); return 0; } static void __Pyx__CyFunction_dealloc(__pyx_CyFunctionObject *m) { if (__Pyx_CyFunction_weakreflist(m) != NULL) PyObject_ClearWeakRefs((PyObject *) m); __Pyx_CyFunction_clear(m); __Pyx_PyHeapTypeObject_GC_Del(m); } static void __Pyx_CyFunction_dealloc(__pyx_CyFunctionObject *m) { PyObject_GC_UnTrack(m); __Pyx__CyFunction_dealloc(m); } static int __Pyx_CyFunction_traverse(__pyx_CyFunctionObject *m, visitproc visit, void *arg) { { int e = __Pyx_call_type_traverse((PyObject*)m, 1, visit, arg); if (e) return e; } Py_VISIT(m->func_closure); #if CYTHON_COMPILING_IN_LIMITED_API Py_VISIT(m->func); #else Py_VISIT(((PyCFunctionObject*)m)->m_module); #endif #if PY_VERSION_HEX < 0x030C0000 || CYTHON_COMPILING_IN_LIMITED_API Py_VISIT(m->func_dict); #else { int e = #if PY_VERSION_HEX < 0x030d0000 _PyObject_VisitManagedDict #else PyObject_VisitManagedDict #endif ((PyObject*)m, visit, arg); if (e != 0) return e; } #endif __Pyx_VISIT_CONST(m->func_name); __Pyx_VISIT_CONST(m->func_qualname); Py_VISIT(m->func_doc); Py_VISIT(m->func_globals); __Pyx_VISIT_CONST(m->func_code); #if !CYTHON_COMPILING_IN_LIMITED_API Py_VISIT(__Pyx_CyFunction_GetClassObj(m)); #endif Py_VISIT(m->defaults_tuple); Py_VISIT(m->defaults_kwdict); Py_VISIT(m->func_is_coroutine); Py_VISIT(m->defaults); return 0; } static PyObject* __Pyx_CyFunction_repr(__pyx_CyFunctionObject *op) { PyObject *repr; __Pyx_BEGIN_CRITICAL_SECTION(op); repr = PyUnicode_FromFormat("", op->func_qualname, (void *)op); __Pyx_END_CRITICAL_SECTION(); return repr; } static PyObject * __Pyx_CyFunction_CallMethod(PyObject *func, PyObject *self, PyObject *arg, PyObject *kw) { #if CYTHON_COMPILING_IN_LIMITED_API PyObject *f = ((__pyx_CyFunctionObject*)func)->func; PyCFunction meth; int flags; meth = PyCFunction_GetFunction(f); if (unlikely(!meth)) return NULL; flags = PyCFunction_GetFlags(f); if (unlikely(flags < 0)) return NULL; #else PyCFunctionObject* f = (PyCFunctionObject*)func; PyCFunction meth = f->m_ml->ml_meth; int flags = f->m_ml->ml_flags; #endif Py_ssize_t size; switch (flags & (METH_VARARGS | METH_KEYWORDS | METH_NOARGS | METH_O)) { case METH_VARARGS: if (likely(kw == NULL || PyDict_Size(kw) == 0)) return (*meth)(self, arg); break; case METH_VARARGS | METH_KEYWORDS: return (*(PyCFunctionWithKeywords)(void(*)(void))meth)(self, arg, kw); case METH_NOARGS: if (likely(kw == NULL || PyDict_Size(kw) == 0)) { #if CYTHON_ASSUME_SAFE_SIZE size = PyTuple_GET_SIZE(arg); #else size = PyTuple_Size(arg); if (unlikely(size < 0)) return NULL; #endif if (likely(size == 0)) return (*meth)(self, NULL); __Pyx_CyFunction_raise_argument_count_error( (__pyx_CyFunctionObject*)func, "takes no arguments", size); return NULL; } break; case METH_O: if (likely(kw == NULL || PyDict_Size(kw) == 0)) { #if CYTHON_ASSUME_SAFE_SIZE size = PyTuple_GET_SIZE(arg); #else size = PyTuple_Size(arg); if (unlikely(size < 0)) return NULL; #endif if (likely(size == 1)) { PyObject *result, *arg0; #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS arg0 = PyTuple_GET_ITEM(arg, 0); #else arg0 = __Pyx_PySequence_ITEM(arg, 0); if (unlikely(!arg0)) return NULL; #endif result = (*meth)(self, arg0); #if !(CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS) Py_DECREF(arg0); #endif return result; } __Pyx_CyFunction_raise_argument_count_error( (__pyx_CyFunctionObject*)func, "takes exactly one argument", size); return NULL; } break; default: PyErr_SetString(PyExc_SystemError, "Bad call flags for CyFunction"); return NULL; } __Pyx_CyFunction_raise_type_error( (__pyx_CyFunctionObject*)func, "takes no keyword arguments"); return NULL; } static CYTHON_INLINE PyObject *__Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject *kw) { PyObject *self, *result; #if CYTHON_COMPILING_IN_LIMITED_API self = PyCFunction_GetSelf(((__pyx_CyFunctionObject*)func)->func); if (unlikely(!self) && PyErr_Occurred()) return NULL; #else self = ((PyCFunctionObject*)func)->m_self; #endif result = __Pyx_CyFunction_CallMethod(func, self, arg, kw); return result; } static PyObject *__Pyx_CyFunction_CallAsMethod(PyObject *func, PyObject *args, PyObject *kw) { PyObject *result; __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *) func; #if CYTHON_METH_FASTCALL && CYTHON_VECTORCALL __pyx_vectorcallfunc vc = __Pyx_CyFunction_func_vectorcall(cyfunc); if (vc) { #if CYTHON_ASSUME_SAFE_MACROS && CYTHON_ASSUME_SAFE_SIZE return __Pyx_PyVectorcall_FastCallDict(func, vc, &PyTuple_GET_ITEM(args, 0), (size_t)PyTuple_GET_SIZE(args), kw); #else (void) &__Pyx_PyVectorcall_FastCallDict; return PyVectorcall_Call(func, args, kw); #endif } #endif if ((cyfunc->flags & __Pyx_CYFUNCTION_CCLASS) && !(cyfunc->flags & __Pyx_CYFUNCTION_STATICMETHOD)) { Py_ssize_t argc; PyObject *new_args; PyObject *self; #if CYTHON_ASSUME_SAFE_SIZE argc = PyTuple_GET_SIZE(args); #else argc = PyTuple_Size(args); if (unlikely(argc < 0)) return NULL; #endif new_args = PyTuple_GetSlice(args, 1, argc); if (unlikely(!new_args)) return NULL; self = PyTuple_GetItem(args, 0); if (unlikely(!self)) { Py_DECREF(new_args); PyErr_Format(PyExc_TypeError, "unbound method %.200S() needs an argument", cyfunc->func_qualname); return NULL; } result = __Pyx_CyFunction_CallMethod(func, self, new_args, kw); Py_DECREF(new_args); } else { result = __Pyx_CyFunction_Call(func, args, kw); } return result; } #if CYTHON_METH_FASTCALL && CYTHON_VECTORCALL static CYTHON_INLINE int __Pyx_CyFunction_Vectorcall_CheckArgs(__pyx_CyFunctionObject *cyfunc, Py_ssize_t nargs, PyObject *kwnames) { int ret = 0; if ((cyfunc->flags & __Pyx_CYFUNCTION_CCLASS) && !(cyfunc->flags & __Pyx_CYFUNCTION_STATICMETHOD)) { if (unlikely(nargs < 1)) { __Pyx_CyFunction_raise_type_error( cyfunc, "needs an argument"); return -1; 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default: return NULL; } if (unlikely(nargs != 0)) { __Pyx_CyFunction_raise_argument_count_error( cyfunc, "takes no arguments", nargs); return NULL; } return meth(self, NULL); } static PyObject * __Pyx_CyFunction_Vectorcall_O(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames) { __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func; Py_ssize_t nargs = PyVectorcall_NARGS(nargsf); PyObject *self; #if CYTHON_COMPILING_IN_LIMITED_API PyCFunction meth = PyCFunction_GetFunction(cyfunc->func); if (unlikely(!meth)) return NULL; #else PyCFunction meth = ((PyCFunctionObject*)cyfunc)->m_ml->ml_meth; #endif switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, kwnames)) { case 1: self = args[0]; args += 1; nargs -= 1; break; case 0: #if CYTHON_COMPILING_IN_LIMITED_API self = PyCFunction_GetSelf(((__pyx_CyFunctionObject*)cyfunc)->func); if (unlikely(!self) && PyErr_Occurred()) return NULL; #else self = ((PyCFunctionObject*)cyfunc)->m_self; #endif break; default: return NULL; } if (unlikely(nargs != 1)) { __Pyx_CyFunction_raise_argument_count_error( cyfunc, "takes exactly one argument", nargs); return NULL; } return meth(self, args[0]); } static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames) { __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func; Py_ssize_t nargs = PyVectorcall_NARGS(nargsf); PyObject *self; #if CYTHON_COMPILING_IN_LIMITED_API PyCFunction meth = PyCFunction_GetFunction(cyfunc->func); if (unlikely(!meth)) return NULL; #else PyCFunction meth = ((PyCFunctionObject*)cyfunc)->m_ml->ml_meth; #endif switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, NULL)) { case 1: self = args[0]; args += 1; nargs -= 1; break; case 0: #if CYTHON_COMPILING_IN_LIMITED_API self = PyCFunction_GetSelf(((__pyx_CyFunctionObject*)cyfunc)->func); if (unlikely(!self) && PyErr_Occurred()) return NULL; #else self = ((PyCFunctionObject*)cyfunc)->m_self; #endif break; default: return NULL; } return ((__Pyx_PyCFunctionFastWithKeywords)(void(*)(void))meth)(self, args, nargs, kwnames); } static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS_METHOD(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames) { __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func; PyTypeObject *cls = (PyTypeObject *) __Pyx_CyFunction_GetClassObj(cyfunc); Py_ssize_t nargs = PyVectorcall_NARGS(nargsf); PyObject *self; #if CYTHON_COMPILING_IN_LIMITED_API PyCFunction meth = PyCFunction_GetFunction(cyfunc->func); if (unlikely(!meth)) return NULL; #else PyCFunction meth = ((PyCFunctionObject*)cyfunc)->m_ml->ml_meth; #endif switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, NULL)) { case 1: self = args[0]; args += 1; nargs -= 1; break; case 0: #if CYTHON_COMPILING_IN_LIMITED_API self = PyCFunction_GetSelf(((__pyx_CyFunctionObject*)cyfunc)->func); if (unlikely(!self) && PyErr_Occurred()) return NULL; #else self = ((PyCFunctionObject*)cyfunc)->m_self; #endif break; default: return NULL; } #if PY_VERSION_HEX < 0x030e00A6 size_t nargs_value = (size_t) nargs; #else Py_ssize_t nargs_value = nargs; #endif return ((__Pyx_PyCMethod)(void(*)(void))meth)(self, cls, args, nargs_value, kwnames); } #endif static PyType_Slot __pyx_CyFunctionType_slots[] = { {Py_tp_dealloc, (void *)__Pyx_CyFunction_dealloc}, {Py_tp_repr, (void *)__Pyx_CyFunction_repr}, {Py_tp_call, (void *)__Pyx_CyFunction_CallAsMethod}, {Py_tp_traverse, (void *)__Pyx_CyFunction_traverse}, {Py_tp_clear, (void *)__Pyx_CyFunction_clear}, {Py_tp_methods, (void *)__pyx_CyFunction_methods}, {Py_tp_members, (void *)__pyx_CyFunction_members}, {Py_tp_getset, (void *)__pyx_CyFunction_getsets}, {Py_tp_descr_get, (void *)__Pyx_PyMethod_New}, {0, 0}, }; static PyType_Spec __pyx_CyFunctionType_spec = { __PYX_TYPE_MODULE_PREFIX "cython_function_or_method", sizeof(__pyx_CyFunctionObject), 0, #ifdef Py_TPFLAGS_METHOD_DESCRIPTOR Py_TPFLAGS_METHOD_DESCRIPTOR | #endif #if CYTHON_METH_FASTCALL #if defined(Py_TPFLAGS_HAVE_VECTORCALL) Py_TPFLAGS_HAVE_VECTORCALL | #elif defined(_Py_TPFLAGS_HAVE_VECTORCALL) _Py_TPFLAGS_HAVE_VECTORCALL | #endif #endif // CYTHON_METH_FASTCALL #if PY_VERSION_HEX >= 0x030C0000 && !CYTHON_COMPILING_IN_LIMITED_API Py_TPFLAGS_MANAGED_DICT | #endif Py_TPFLAGS_IMMUTABLETYPE | Py_TPFLAGS_DISALLOW_INSTANTIATION | Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC | Py_TPFLAGS_BASETYPE, __pyx_CyFunctionType_slots }; static int __pyx_CyFunction_init(PyObject *module) { __pyx_mstatetype *mstate = __Pyx_PyModule_GetState(module); mstate->__pyx_CyFunctionType = __Pyx_FetchCommonTypeFromSpec( mstate->__pyx_CommonTypesMetaclassType, module, &__pyx_CyFunctionType_spec, NULL); if (unlikely(mstate->__pyx_CyFunctionType == NULL)) { return -1; } return 0; } static CYTHON_INLINE PyObject *__Pyx_CyFunction_InitDefaults(PyObject *func, PyTypeObject *defaults_type) { __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; m->defaults = PyObject_CallObject((PyObject*)defaults_type, NULL); // _PyObject_New(defaults_type); if (unlikely(!m->defaults)) return NULL; return m->defaults; } static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *func, PyObject *tuple) { __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; m->defaults_tuple = tuple; Py_INCREF(tuple); } static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *func, PyObject *dict) { __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; m->defaults_kwdict = dict; Py_INCREF(dict); } static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *func, PyObject *dict) { __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; m->func_annotations = dict; Py_INCREF(dict); } /* CythonFunction */ static PyObject *__Pyx_CyFunction_New(PyMethodDef *ml, int flags, PyObject* qualname, PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) { PyObject *op = __Pyx_CyFunction_Init( PyObject_GC_New(__pyx_CyFunctionObject, __pyx_mstate_global->__pyx_CyFunctionType), ml, flags, qualname, closure, module, globals, code ); if (likely(op)) { PyObject_GC_Track(op); } return op; } /* ObjectGetItem */ #if CYTHON_USE_TYPE_SLOTS static PyObject *__Pyx_PyObject_GetIndex(PyObject *obj, PyObject *index) { PyObject *runerr = NULL; Py_ssize_t key_value; key_value = __Pyx_PyIndex_AsSsize_t(index); if (likely(key_value != -1 || !(runerr = PyErr_Occurred()))) { return __Pyx_GetItemInt_Fast(obj, key_value, 0, 1, 1, 1); } if (PyErr_GivenExceptionMatches(runerr, PyExc_OverflowError)) { __Pyx_TypeName index_type_name = __Pyx_PyType_GetFullyQualifiedName(Py_TYPE(index)); PyErr_Clear(); PyErr_Format(PyExc_IndexError, "cannot fit '" __Pyx_FMT_TYPENAME "' into an index-sized integer", index_type_name); __Pyx_DECREF_TypeName(index_type_name); } return NULL; } static PyObject *__Pyx_PyObject_GetItem_Slow(PyObject *obj, PyObject *key) { __Pyx_TypeName obj_type_name; if (likely(PyType_Check(obj))) { PyObject *meth = __Pyx_PyObject_GetAttrStrNoError(obj, __pyx_mstate_global->__pyx_n_u_class_getitem); if (!meth) { PyErr_Clear(); } else { PyObject *result = __Pyx_PyObject_CallOneArg(meth, key); Py_DECREF(meth); return result; } } obj_type_name = __Pyx_PyType_GetFullyQualifiedName(Py_TYPE(obj)); PyErr_Format(PyExc_TypeError, "'" __Pyx_FMT_TYPENAME "' object is not subscriptable", obj_type_name); __Pyx_DECREF_TypeName(obj_type_name); return NULL; } static PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject *key) { PyTypeObject *tp = Py_TYPE(obj); PyMappingMethods *mm = tp->tp_as_mapping; PySequenceMethods *sm = tp->tp_as_sequence; if (likely(mm && mm->mp_subscript)) { return mm->mp_subscript(obj, key); } if (likely(sm && sm->sq_item)) { return __Pyx_PyObject_GetIndex(obj, key); } return __Pyx_PyObject_GetItem_Slow(obj, key); } #endif /* DictGetItem */ #if !CYTHON_COMPILING_IN_PYPY static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) { PyObject *value; if (unlikely(__Pyx_PyDict_GetItemRef(d, key, &value) == 0)) { // no value, no error if (unlikely(PyTuple_Check(key))) { PyObject* args = PyTuple_Pack(1, key); if (likely(args)) { PyErr_SetObject(PyExc_KeyError, args); Py_DECREF(args); } } else { PyErr_SetObject(PyExc_KeyError, key); } } return value; } #endif /* HasAttr */ #if __PYX_LIMITED_VERSION_HEX < 0x030d0000 static CYTHON_INLINE int __Pyx_HasAttr(PyObject *o, PyObject *n) { PyObject *r; if (unlikely(!PyUnicode_Check(n))) { PyErr_SetString(PyExc_TypeError, "hasattr(): attribute name must be string"); return -1; } r = __Pyx_PyObject_GetAttrStrNoError(o, n); if (!r) { return (unlikely(PyErr_Occurred())) ? -1 : 0; } else { Py_DECREF(r); return 1; } } #endif /* unicode_tailmatch */ static int __Pyx_PyUnicode_TailmatchTuple(PyObject* s, PyObject* substrings, Py_ssize_t start, Py_ssize_t end, int direction) { Py_ssize_t i, count = __Pyx_PyTuple_GET_SIZE(substrings); #if !CYTHON_ASSUME_SAFE_SIZE if (unlikely(count < 0)) return -1; #endif for (i = 0; i < count; i++) { Py_ssize_t result; #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS result = PyUnicode_Tailmatch(s, PyTuple_GET_ITEM(substrings, i), start, end, direction); #else PyObject* sub = __Pyx_PySequence_ITEM(substrings, i); if (unlikely(!sub)) return -1; result = PyUnicode_Tailmatch(s, sub, start, end, direction); Py_DECREF(sub); #endif if (result) { return (int) result; } } return 0; } static int __Pyx_PyUnicode_Tailmatch(PyObject* s, PyObject* substr, Py_ssize_t start, Py_ssize_t end, int direction) { if (unlikely(PyTuple_Check(substr))) { return __Pyx_PyUnicode_TailmatchTuple(s, substr, start, end, direction); } return (int) PyUnicode_Tailmatch(s, substr, start, end, direction); } /* PyObjectCallNoArg (used by PyObjectCallMethod0) */ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func) { PyObject *arg[2] = {NULL, NULL}; return __Pyx_PyObject_FastCall(func, arg + 1, 0 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET); } /* PyObjectGetMethod (used by PyObjectCallMethod0) */ #if !(CYTHON_VECTORCALL && (__PYX_LIMITED_VERSION_HEX >= 0x030C0000 || (!CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x03090000))) static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **method) { PyObject *attr; #if CYTHON_UNPACK_METHODS && CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_PYTYPE_LOOKUP __Pyx_TypeName type_name; PyTypeObject *tp = Py_TYPE(obj); PyObject *descr; descrgetfunc f = NULL; PyObject **dictptr, *dict; int meth_found = 0; assert (*method == NULL); if (unlikely(tp->tp_getattro != PyObject_GenericGetAttr)) { attr = __Pyx_PyObject_GetAttrStr(obj, name); goto try_unpack; } if (unlikely(tp->tp_dict == NULL) && unlikely(PyType_Ready(tp) < 0)) { return 0; } descr = _PyType_Lookup(tp, name); if (likely(descr != NULL)) { Py_INCREF(descr); #if defined(Py_TPFLAGS_METHOD_DESCRIPTOR) && Py_TPFLAGS_METHOD_DESCRIPTOR if (__Pyx_PyType_HasFeature(Py_TYPE(descr), Py_TPFLAGS_METHOD_DESCRIPTOR)) #else #ifdef __Pyx_CyFunction_USED if (likely(PyFunction_Check(descr) || __Pyx_IS_TYPE(descr, &PyMethodDescr_Type) || __Pyx_CyFunction_Check(descr))) #else if (likely(PyFunction_Check(descr) || __Pyx_IS_TYPE(descr, &PyMethodDescr_Type))) #endif #endif { meth_found = 1; } else { f = Py_TYPE(descr)->tp_descr_get; if (f != NULL && PyDescr_IsData(descr)) { attr = f(descr, obj, (PyObject *)Py_TYPE(obj)); Py_DECREF(descr); goto try_unpack; } } } dictptr = _PyObject_GetDictPtr(obj); if (dictptr != NULL && (dict = *dictptr) != NULL) { Py_INCREF(dict); attr = __Pyx_PyDict_GetItemStr(dict, name); if (attr != NULL) { Py_INCREF(attr); Py_DECREF(dict); Py_XDECREF(descr); goto try_unpack; } Py_DECREF(dict); } if (meth_found) { *method = descr; return 1; } if (f != NULL) { attr = f(descr, obj, (PyObject *)Py_TYPE(obj)); Py_DECREF(descr); goto try_unpack; } if (likely(descr != NULL)) { *method = descr; return 0; } type_name = __Pyx_PyType_GetFullyQualifiedName(tp); PyErr_Format(PyExc_AttributeError, "'" __Pyx_FMT_TYPENAME "' object has no attribute '%U'", type_name, name); __Pyx_DECREF_TypeName(type_name); return 0; #else attr = __Pyx_PyObject_GetAttrStr(obj, name); goto try_unpack; #endif try_unpack: #if CYTHON_UNPACK_METHODS if (likely(attr) && PyMethod_Check(attr) && likely(PyMethod_GET_SELF(attr) == obj)) { PyObject *function = PyMethod_GET_FUNCTION(attr); Py_INCREF(function); Py_DECREF(attr); *method = function; return 1; } #endif *method = attr; return 0; } #endif /* PyObjectCallMethod0 (used by dict_iter) */ static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name) { #if CYTHON_VECTORCALL && (__PYX_LIMITED_VERSION_HEX >= 0x030C0000 || (!CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x03090000)) PyObject *args[1] = {obj}; (void) __Pyx_PyObject_CallOneArg; (void) __Pyx_PyObject_CallNoArg; return PyObject_VectorcallMethod(method_name, args, 1 | PY_VECTORCALL_ARGUMENTS_OFFSET, NULL); #else PyObject *method = NULL, *result = NULL; int is_method = __Pyx_PyObject_GetMethod(obj, method_name, &method); if (likely(is_method)) { result = __Pyx_PyObject_CallOneArg(method, obj); Py_DECREF(method); return result; } if (unlikely(!method)) goto bad; result = __Pyx_PyObject_CallNoArg(method); Py_DECREF(method); bad: return result; #endif } /* RaiseNoneIterError (used by UnpackTupleError) */ static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); } /* UnpackTupleError (used by UnpackTuple2) */ static void __Pyx_UnpackTupleError(PyObject *t, Py_ssize_t index) { if (t == Py_None) { __Pyx_RaiseNoneNotIterableError(); } else { Py_ssize_t size = __Pyx_PyTuple_GET_SIZE(t); #if !CYTHON_ASSUME_SAFE_SIZE if (unlikely(size < 0)) return; #endif if (size < index) { __Pyx_RaiseNeedMoreValuesError(size); } else { __Pyx_RaiseTooManyValuesError(index); } } } /* UnpackTuple2 (used by dict_iter) */ static CYTHON_INLINE int __Pyx_unpack_tuple2( PyObject* tuple, PyObject** value1, PyObject** value2, int is_tuple, int has_known_size, int decref_tuple) { if (likely(is_tuple || PyTuple_Check(tuple))) { Py_ssize_t size; if (has_known_size) { return __Pyx_unpack_tuple2_exact(tuple, value1, value2, decref_tuple); } size = __Pyx_PyTuple_GET_SIZE(tuple); if (likely(size == 2)) { return __Pyx_unpack_tuple2_exact(tuple, value1, value2, decref_tuple); } if (size >= 0) { __Pyx_UnpackTupleError(tuple, 2); } return -1; } else { return __Pyx_unpack_tuple2_generic(tuple, value1, value2, has_known_size, decref_tuple); } } static CYTHON_INLINE int __Pyx_unpack_tuple2_exact( PyObject* tuple, PyObject** pvalue1, PyObject** pvalue2, int decref_tuple) { PyObject *value1 = NULL, *value2 = NULL; #if CYTHON_AVOID_BORROWED_REFS || !CYTHON_ASSUME_SAFE_MACROS value1 = __Pyx_PySequence_ITEM(tuple, 0); if (unlikely(!value1)) goto bad; value2 = __Pyx_PySequence_ITEM(tuple, 1); if (unlikely(!value2)) goto bad; #else value1 = PyTuple_GET_ITEM(tuple, 0); Py_INCREF(value1); value2 = PyTuple_GET_ITEM(tuple, 1); Py_INCREF(value2); #endif if (decref_tuple) { Py_DECREF(tuple); } *pvalue1 = value1; *pvalue2 = value2; return 0; #if CYTHON_AVOID_BORROWED_REFS || !CYTHON_ASSUME_SAFE_MACROS bad: Py_XDECREF(value1); Py_XDECREF(value2); if (decref_tuple) { Py_XDECREF(tuple); } return -1; #endif } static int __Pyx_unpack_tuple2_generic(PyObject* tuple, PyObject** pvalue1, PyObject** pvalue2, int has_known_size, int decref_tuple) { Py_ssize_t index; PyObject *value1 = NULL, *value2 = NULL, *iter = NULL; iternextfunc iternext; iter = PyObject_GetIter(tuple); if (unlikely(!iter)) goto bad; if (decref_tuple) { Py_DECREF(tuple); tuple = NULL; } iternext = __Pyx_PyObject_GetIterNextFunc(iter); value1 = iternext(iter); if (unlikely(!value1)) { index = 0; goto unpacking_failed; } value2 = iternext(iter); if (unlikely(!value2)) { index = 1; goto unpacking_failed; } if (!has_known_size && unlikely(__Pyx_IternextUnpackEndCheck(iternext(iter), 2))) goto bad; Py_DECREF(iter); *pvalue1 = value1; *pvalue2 = value2; return 0; unpacking_failed: if (!has_known_size && __Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index); bad: Py_XDECREF(iter); Py_XDECREF(value1); Py_XDECREF(value2); if (decref_tuple) { Py_XDECREF(tuple); } return -1; } /* dict_iter */ #if CYTHON_COMPILING_IN_PYPY #include #endif static CYTHON_INLINE PyObject* __Pyx_dict_iterator(PyObject* iterable, int is_dict, PyObject* method_name, Py_ssize_t* p_orig_length, int* p_source_is_dict) { is_dict = is_dict || likely(PyDict_CheckExact(iterable)); *p_source_is_dict = is_dict; if (is_dict) { #if !CYTHON_COMPILING_IN_PYPY *p_orig_length = PyDict_Size(iterable); Py_INCREF(iterable); return iterable; #else static PyObject *py_items = NULL, *py_keys = NULL, *py_values = NULL; PyObject **pp = NULL; if (method_name) { const char *name = PyUnicode_AsUTF8(method_name); if (strcmp(name, "iteritems") == 0) pp = &py_items; else if (strcmp(name, "iterkeys") == 0) pp = &py_keys; else if (strcmp(name, "itervalues") == 0) pp = &py_values; if (pp) { if (!*pp) { *pp = PyUnicode_FromString(name + 4); if (!*pp) return NULL; } method_name = *pp; } } #endif } *p_orig_length = 0; if (method_name) { PyObject* iter; iterable = __Pyx_PyObject_CallMethod0(iterable, method_name); if (!iterable) return NULL; #if !CYTHON_COMPILING_IN_PYPY if (PyTuple_CheckExact(iterable) || PyList_CheckExact(iterable)) return iterable; #endif iter = PyObject_GetIter(iterable); Py_DECREF(iterable); return iter; } return PyObject_GetIter(iterable); } #if !CYTHON_AVOID_BORROWED_REFS static CYTHON_INLINE int __Pyx_dict_iter_next_source_is_dict( PyObject* iter_obj, CYTHON_NCP_UNUSED Py_ssize_t orig_length, CYTHON_NCP_UNUSED Py_ssize_t* ppos, PyObject** pkey, PyObject** pvalue, PyObject** pitem) { PyObject *key, *value; if (unlikely(orig_length != PyDict_Size(iter_obj))) { PyErr_SetString(PyExc_RuntimeError, "dictionary changed size during iteration"); return -1; } if (unlikely(!PyDict_Next(iter_obj, ppos, &key, &value))) { return 0; } if (pitem) { PyObject* tuple = PyTuple_New(2); if (unlikely(!tuple)) { return -1; } Py_INCREF(key); Py_INCREF(value); #if CYTHON_ASSUME_SAFE_MACROS PyTuple_SET_ITEM(tuple, 0, key); PyTuple_SET_ITEM(tuple, 1, value); #else if (unlikely(PyTuple_SetItem(tuple, 0, key) < 0)) { Py_DECREF(value); Py_DECREF(tuple); return -1; } if (unlikely(PyTuple_SetItem(tuple, 1, value) < 0)) { Py_DECREF(tuple); return -1; } #endif *pitem = tuple; } else { if (pkey) { Py_INCREF(key); *pkey = key; } if (pvalue) { Py_INCREF(value); *pvalue = value; } } return 1; } #endif static CYTHON_INLINE int __Pyx_dict_iter_next( PyObject* iter_obj, CYTHON_NCP_UNUSED Py_ssize_t orig_length, CYTHON_NCP_UNUSED Py_ssize_t* ppos, PyObject** pkey, PyObject** pvalue, PyObject** pitem, int source_is_dict) { PyObject* next_item; #if !CYTHON_AVOID_BORROWED_REFS if (source_is_dict) { int result; #if PY_VERSION_HEX >= 0x030d0000 && !CYTHON_COMPILING_IN_LIMITED_API Py_BEGIN_CRITICAL_SECTION(iter_obj); #endif result = __Pyx_dict_iter_next_source_is_dict(iter_obj, orig_length, ppos, pkey, pvalue, pitem); #if PY_VERSION_HEX >= 0x030d0000 && !CYTHON_COMPILING_IN_LIMITED_API Py_END_CRITICAL_SECTION(); #endif return result; } else if (PyTuple_CheckExact(iter_obj)) { Py_ssize_t pos = *ppos; Py_ssize_t tuple_size = __Pyx_PyTuple_GET_SIZE(iter_obj); #if !CYTHON_ASSUME_SAFE_SIZE if (unlikely(tuple_size < 0)) return -1; #endif if (unlikely(pos >= tuple_size)) return 0; *ppos = pos + 1; #if CYTHON_ASSUME_SAFE_MACROS next_item = PyTuple_GET_ITEM(iter_obj, pos); #else next_item = PyTuple_GetItem(iter_obj, pos); if (unlikely(!next_item)) return -1; #endif Py_INCREF(next_item); } else if (PyList_CheckExact(iter_obj)) { Py_ssize_t pos = *ppos; Py_ssize_t list_size = __Pyx_PyList_GET_SIZE(iter_obj); #if !CYTHON_ASSUME_SAFE_SIZE if (unlikely(list_size < 0)) return -1; #endif if (unlikely(pos >= list_size)) return 0; *ppos = pos + 1; next_item = __Pyx_PyList_GetItemRef(iter_obj, pos); if (unlikely(!next_item)) return -1; } else #endif { next_item = PyIter_Next(iter_obj); if (unlikely(!next_item)) { return __Pyx_IterFinish(); } } if (pitem) { *pitem = next_item; } else if (pkey && pvalue) { if (__Pyx_unpack_tuple2(next_item, pkey, pvalue, source_is_dict, source_is_dict, 1)) return -1; } else if (pkey) { *pkey = next_item; } else { *pvalue = next_item; } return 1; } /* PyLongBinop */ #if !CYTHON_COMPILING_IN_PYPY static PyObject* __Pyx_Fallback___Pyx_PyLong_SubtractObjC(PyObject *op1, PyObject *op2, int inplace) { return (inplace ? PyNumber_InPlaceSubtract : PyNumber_Subtract)(op1, op2); } #if CYTHON_USE_PYLONG_INTERNALS static PyObject* __Pyx_Unpacked___Pyx_PyLong_SubtractObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check) { CYTHON_MAYBE_UNUSED_VAR(inplace); CYTHON_UNUSED_VAR(zerodivision_check); const long b = intval; long a; const PY_LONG_LONG llb = intval; PY_LONG_LONG lla; if (unlikely(__Pyx_PyLong_IsZero(op1))) { return PyLong_FromLong(-intval); } const int is_positive = __Pyx_PyLong_IsPos(op1); const digit* digits = __Pyx_PyLong_Digits(op1); const Py_ssize_t size = __Pyx_PyLong_DigitCount(op1); if (likely(size == 1)) { a = (long) digits[0]; if (!is_positive) a *= -1; } else { switch (size) { case 2: if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); if (!is_positive) a *= -1; goto calculate_long; } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); if (!is_positive) lla *= -1; goto calculate_long_long; } break; case 3: if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); if (!is_positive) a *= -1; goto calculate_long; } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); if (!is_positive) lla *= -1; goto calculate_long_long; } break; case 4: if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); if (!is_positive) a *= -1; goto calculate_long; } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); if (!is_positive) lla *= -1; goto calculate_long_long; } break; } return PyLong_Type.tp_as_number->nb_subtract(op1, op2); } calculate_long: { long x; x = a - b; return PyLong_FromLong(x); } calculate_long_long: { PY_LONG_LONG llx; llx = lla - llb; return PyLong_FromLongLong(llx); } } #endif static PyObject* __Pyx_Float___Pyx_PyLong_SubtractObjC(PyObject *float_val, long intval, int zerodivision_check) { CYTHON_UNUSED_VAR(zerodivision_check); const long b = intval; double a = __Pyx_PyFloat_AS_DOUBLE(float_val); double result; result = ((double)a) - (double)b; return PyFloat_FromDouble(result); } static CYTHON_INLINE PyObject* __Pyx_PyLong_SubtractObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check) { CYTHON_MAYBE_UNUSED_VAR(intval); CYTHON_UNUSED_VAR(zerodivision_check); #if CYTHON_USE_PYLONG_INTERNALS if (likely(PyLong_CheckExact(op1))) { return __Pyx_Unpacked___Pyx_PyLong_SubtractObjC(op1, op2, intval, inplace, zerodivision_check); } #endif if (PyFloat_CheckExact(op1)) { return __Pyx_Float___Pyx_PyLong_SubtractObjC(op1, intval, zerodivision_check); } return __Pyx_Fallback___Pyx_PyLong_SubtractObjC(op1, op2, inplace); } #endif /* SwapException */ #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE void __Pyx__ExceptionSwap(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { PyObject *tmp_type, *tmp_value, *tmp_tb; #if CYTHON_USE_EXC_INFO_STACK && PY_VERSION_HEX >= 0x030B00a4 _PyErr_StackItem *exc_info = tstate->exc_info; tmp_value = exc_info->exc_value; exc_info->exc_value = *value; if (tmp_value == NULL || tmp_value == Py_None) { Py_XDECREF(tmp_value); tmp_value = NULL; tmp_type = NULL; tmp_tb = NULL; } else { tmp_type = (PyObject*) Py_TYPE(tmp_value); Py_INCREF(tmp_type); #if CYTHON_COMPILING_IN_CPYTHON tmp_tb = ((PyBaseExceptionObject*) tmp_value)->traceback; Py_XINCREF(tmp_tb); #else tmp_tb = PyException_GetTraceback(tmp_value); #endif } #elif CYTHON_USE_EXC_INFO_STACK _PyErr_StackItem *exc_info = tstate->exc_info; tmp_type = exc_info->exc_type; tmp_value = exc_info->exc_value; tmp_tb = exc_info->exc_traceback; exc_info->exc_type = *type; exc_info->exc_value = *value; exc_info->exc_traceback = *tb; #else tmp_type = tstate->exc_type; tmp_value = tstate->exc_value; tmp_tb = tstate->exc_traceback; tstate->exc_type = *type; tstate->exc_value = *value; tstate->exc_traceback = *tb; #endif *type = tmp_type; *value = tmp_value; *tb = tmp_tb; } #else static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb) { PyObject *tmp_type, *tmp_value, *tmp_tb; PyErr_GetExcInfo(&tmp_type, &tmp_value, &tmp_tb); PyErr_SetExcInfo(*type, *value, *tb); *type = tmp_type; *value = tmp_value; *tb = tmp_tb; } #endif /* pybytes_as_double (used by pynumber_float) */ static double __Pyx_SlowPyString_AsDouble(PyObject *obj) { PyObject *float_value = PyFloat_FromString(obj); if (likely(float_value)) { double value = __Pyx_PyFloat_AS_DOUBLE(float_value); Py_DECREF(float_value); return value; } return (double)-1; } static const char* __Pyx__PyBytes_AsDouble_Copy(const char* start, char* buffer, Py_ssize_t length) { int last_was_punctuation = 1; int parse_error_found = 0; Py_ssize_t i; for (i=0; i < length; i++) { char chr = start[i]; int is_punctuation = (chr == '_') | (chr == '.') | (chr == 'e') | (chr == 'E'); *buffer = chr; buffer += (chr != '_'); parse_error_found |= last_was_punctuation & is_punctuation; last_was_punctuation = is_punctuation; } parse_error_found |= last_was_punctuation; *buffer = '\0'; return unlikely(parse_error_found) ? NULL : buffer; } static double __Pyx__PyBytes_AsDouble_inf_nan(const char* start, Py_ssize_t length) { int matches = 1; char sign = start[0]; int is_signed = (sign == '+') | (sign == '-'); start += is_signed; length -= is_signed; switch (start[0]) { #ifdef Py_NAN case 'n': case 'N': if (unlikely(length != 3)) goto parse_failure; matches &= (start[1] == 'a' || start[1] == 'A'); matches &= (start[2] == 'n' || start[2] == 'N'); if (unlikely(!matches)) goto parse_failure; return (sign == '-') ? -Py_NAN : Py_NAN; #endif case 'i': case 'I': if (unlikely(length < 3)) goto parse_failure; matches &= (start[1] == 'n' || start[1] == 'N'); matches &= (start[2] == 'f' || start[2] == 'F'); if (likely(length == 3 && matches)) return (sign == '-') ? -Py_HUGE_VAL : Py_HUGE_VAL; if (unlikely(length != 8)) goto parse_failure; matches &= (start[3] == 'i' || start[3] == 'I'); matches &= (start[4] == 'n' || start[4] == 'N'); matches &= (start[5] == 'i' || start[5] == 'I'); matches &= (start[6] == 't' || start[6] == 'T'); matches &= (start[7] == 'y' || start[7] == 'Y'); if (unlikely(!matches)) goto parse_failure; return (sign == '-') ? -Py_HUGE_VAL : Py_HUGE_VAL; case '.': case '0': case '1': case '2': case '3': case '4': case '5': case '6': case '7': case '8': case '9': break; default: goto parse_failure; } return 0.0; parse_failure: return -1.0; } static CYTHON_INLINE int __Pyx__PyBytes_AsDouble_IsSpace(char ch) { return (ch == 0x20) | !((ch < 0x9) | (ch > 0xd)); } CYTHON_UNUSED static double __Pyx__PyBytes_AsDouble(PyObject *obj, const char* start, Py_ssize_t length) { double value; Py_ssize_t i, digits; const char *last = start + length; char *end; while (__Pyx__PyBytes_AsDouble_IsSpace(*start)) start++; while (start < last - 1 && __Pyx__PyBytes_AsDouble_IsSpace(last[-1])) last--; length = last - start; if (unlikely(length <= 0)) goto fallback; value = __Pyx__PyBytes_AsDouble_inf_nan(start, length); if (unlikely(value == -1.0)) goto fallback; if (value != 0.0) return value; digits = 0; for (i=0; i < length; digits += start[i++] != '_'); if (likely(digits == length)) { value = PyOS_string_to_double(start, &end, NULL); } else if (digits < 40) { char number[40]; last = __Pyx__PyBytes_AsDouble_Copy(start, number, length); if (unlikely(!last)) goto fallback; value = PyOS_string_to_double(number, &end, NULL); } else { char *number = (char*) PyMem_Malloc((digits + 1) * sizeof(char)); if (unlikely(!number)) goto fallback; last = __Pyx__PyBytes_AsDouble_Copy(start, number, length); if (unlikely(!last)) { PyMem_Free(number); goto fallback; } value = PyOS_string_to_double(number, &end, NULL); PyMem_Free(number); } if (likely(end == last) || (value == (double)-1 && PyErr_Occurred())) { return value; } fallback: return __Pyx_SlowPyString_AsDouble(obj); } /* pynumber_float */ static CYTHON_INLINE PyObject* __Pyx__PyNumber_Float(PyObject* obj) { double val; if (PyLong_CheckExact(obj)) { #if CYTHON_USE_PYLONG_INTERNALS if (likely(__Pyx_PyLong_IsCompact(obj))) { val = (double) __Pyx_PyLong_CompactValue(obj); goto no_error; } #endif val = PyLong_AsDouble(obj); } else if (PyUnicode_CheckExact(obj)) { val = __Pyx_PyUnicode_AsDouble(obj); } else if (PyBytes_CheckExact(obj)) { val = __Pyx_PyBytes_AsDouble(obj); } else if (PyByteArray_CheckExact(obj)) { val = __Pyx_PyByteArray_AsDouble(obj); } else { return PyNumber_Float(obj); } if (unlikely(val == -1 && PyErr_Occurred())) { return NULL; } #if CYTHON_USE_PYLONG_INTERNALS no_error: #endif return PyFloat_FromDouble(val); } /* PyObjectCall2Args (used by PyObjectCallMethod1) */ static CYTHON_INLINE PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2) { PyObject *args[3] = {NULL, arg1, arg2}; return __Pyx_PyObject_FastCall(function, args+1, 2 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET); } /* PyObjectCallMethod1 (used by append) */ #if !(CYTHON_VECTORCALL && (__PYX_LIMITED_VERSION_HEX >= 0x030C0000 || (!CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x03090000))) static PyObject* __Pyx__PyObject_CallMethod1(PyObject* method, PyObject* arg) { PyObject *result = __Pyx_PyObject_CallOneArg(method, arg); Py_DECREF(method); return result; } #endif static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg) { #if CYTHON_VECTORCALL && (__PYX_LIMITED_VERSION_HEX >= 0x030C0000 || (!CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x03090000)) PyObject *args[2] = {obj, arg}; (void) __Pyx_PyObject_CallOneArg; (void) __Pyx_PyObject_Call2Args; return PyObject_VectorcallMethod(method_name, args, 2 | PY_VECTORCALL_ARGUMENTS_OFFSET, NULL); #else PyObject *method = NULL, *result; int is_method = __Pyx_PyObject_GetMethod(obj, method_name, &method); if (likely(is_method)) { result = __Pyx_PyObject_Call2Args(method, obj, arg); Py_DECREF(method); return result; } if (unlikely(!method)) return NULL; return __Pyx__PyObject_CallMethod1(method, arg); #endif } /* append */ static CYTHON_INLINE int __Pyx_PyObject_Append(PyObject* L, PyObject* x) { if (likely(PyList_CheckExact(L))) { if (unlikely(__Pyx_PyList_Append(L, x) < 0)) return -1; } else { PyObject* retval = __Pyx_PyObject_CallMethod1(L, __pyx_mstate_global->__pyx_n_u_append, x); if (unlikely(!retval)) return -1; Py_DECREF(retval); } return 0; } /* ImportImpl (used by Import) */ static int __Pyx__Import_GetModule(PyObject *qualname, PyObject **module) { PyObject *imported_module = PyImport_GetModule(qualname); if (unlikely(!imported_module)) { *module = NULL; if (PyErr_Occurred()) { return -1; } return 0; } *module = imported_module; return 1; } static int __Pyx__Import_Lookup(PyObject *qualname, PyObject *const *imported_names, Py_ssize_t len_imported_names, PyObject **module) { PyObject *imported_module; PyObject *top_level_package_name; Py_ssize_t i; int status, module_found; Py_ssize_t dot_index; module_found = __Pyx__Import_GetModule(qualname, &imported_module); if (unlikely(!module_found || module_found == -1)) { *module = NULL; return module_found; } if (imported_names) { for (i = 0; i < len_imported_names; i++) { PyObject *imported_name = imported_names[i]; #if __PYX_LIMITED_VERSION_HEX < 0x030d0000 int has_imported_attribute = PyObject_HasAttr(imported_module, imported_name); #else int has_imported_attribute = PyObject_HasAttrWithError(imported_module, imported_name); if (unlikely(has_imported_attribute == -1)) goto error; #endif if (!has_imported_attribute) { goto not_found; } } *module = imported_module; return 1; } dot_index = PyUnicode_FindChar(qualname, '.', 0, PY_SSIZE_T_MAX, 1); if (dot_index == -1) { *module = imported_module; return 1; } if (unlikely(dot_index == -2)) goto error; top_level_package_name = PyUnicode_Substring(qualname, 0, dot_index); if (unlikely(!top_level_package_name)) goto error; Py_DECREF(imported_module); status = __Pyx__Import_GetModule(top_level_package_name, module); Py_DECREF(top_level_package_name); return status; error: Py_DECREF(imported_module); *module = NULL; return -1; not_found: Py_DECREF(imported_module); *module = NULL; return 0; } static PyObject *__Pyx__Import(PyObject *name, PyObject *const *imported_names, Py_ssize_t len_imported_names, PyObject *qualname, PyObject *moddict, int level) { PyObject *module = 0; PyObject *empty_dict = 0; PyObject *from_list = 0; int module_found; if (!qualname) { qualname = name; } module_found = __Pyx__Import_Lookup(qualname, imported_names, len_imported_names, &module); if (likely(module_found == 1)) { return module; } else if (unlikely(module_found == -1)) { return NULL; } empty_dict = PyDict_New(); if (unlikely(!empty_dict)) goto bad; if (imported_names) { #if CYTHON_COMPILING_IN_CPYTHON from_list = __Pyx_PyList_FromArray(imported_names, len_imported_names); if (unlikely(!from_list)) goto bad; #else from_list = PyList_New(len_imported_names); if (unlikely(!from_list)) goto bad; for (Py_ssize_t i=0; i__pyx_d, level); } /* PyObjectLookupSpecial */ #if CYTHON_USE_PYTYPE_LOOKUP && CYTHON_USE_TYPE_SLOTS static CYTHON_INLINE PyObject* __Pyx__PyObject_LookupSpecial(PyObject* obj, PyObject* attr_name, int with_error) { PyObject *res; PyTypeObject *tp = Py_TYPE(obj); res = _PyType_Lookup(tp, attr_name); if (likely(res)) { descrgetfunc f = Py_TYPE(res)->tp_descr_get; if (!f) { Py_INCREF(res); } else { res = f(res, obj, (PyObject *)tp); } } else if (with_error) { PyErr_SetObject(PyExc_AttributeError, attr_name); } return res; } #endif /* ImportFrom */ static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { PyObject* value = __Pyx_PyObject_GetAttrStr(module, name); if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) { const char* module_name_str = 0; PyObject* module_name = 0; PyObject* module_dot = 0; PyObject* full_name = 0; PyErr_Clear(); module_name_str = PyModule_GetName(module); if (unlikely(!module_name_str)) { goto modbad; } module_name = PyUnicode_FromString(module_name_str); if (unlikely(!module_name)) { goto modbad; } module_dot = PyUnicode_Concat(module_name, __pyx_mstate_global->__pyx_kp_u__8); if (unlikely(!module_dot)) { goto modbad; } full_name = PyUnicode_Concat(module_dot, name); if (unlikely(!full_name)) { goto modbad; } #if (CYTHON_COMPILING_IN_PYPY && PYPY_VERSION_NUM < 0x07030400) ||\ CYTHON_COMPILING_IN_GRAAL { PyObject *modules = PyImport_GetModuleDict(); if (unlikely(!modules)) goto modbad; value = PyObject_GetItem(modules, full_name); } #else value = PyImport_GetModule(full_name); #endif modbad: Py_XDECREF(full_name); Py_XDECREF(module_dot); Py_XDECREF(module_name); } if (unlikely(!value)) { PyErr_Format(PyExc_ImportError, "cannot import name %S", name); } return value; } /* PyLongBinop */ #if !CYTHON_COMPILING_IN_PYPY static PyObject* __Pyx_Fallback___Pyx_PyLong_AddObjC(PyObject *op1, PyObject *op2, int inplace) { return (inplace ? PyNumber_InPlaceAdd : PyNumber_Add)(op1, op2); } #if CYTHON_USE_PYLONG_INTERNALS static PyObject* __Pyx_Unpacked___Pyx_PyLong_AddObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check) { CYTHON_MAYBE_UNUSED_VAR(inplace); CYTHON_UNUSED_VAR(zerodivision_check); const long b = intval; long a; const PY_LONG_LONG llb = intval; PY_LONG_LONG lla; if (unlikely(__Pyx_PyLong_IsZero(op1))) { return __Pyx_NewRef(op2); } const int is_positive = __Pyx_PyLong_IsPos(op1); const digit* digits = __Pyx_PyLong_Digits(op1); const Py_ssize_t size = __Pyx_PyLong_DigitCount(op1); if (likely(size == 1)) { a = (long) digits[0]; if (!is_positive) a *= -1; } else { switch (size) { case 2: if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); if (!is_positive) a *= -1; goto calculate_long; } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); if (!is_positive) lla *= -1; goto calculate_long_long; } break; case 3: if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); if (!is_positive) a *= -1; goto calculate_long; } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); if (!is_positive) lla *= -1; goto calculate_long_long; } break; case 4: if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); if (!is_positive) a *= -1; goto calculate_long; } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); if (!is_positive) lla *= -1; goto calculate_long_long; } break; } return PyLong_Type.tp_as_number->nb_add(op1, op2); } calculate_long: { long x; x = a + b; return PyLong_FromLong(x); } calculate_long_long: { PY_LONG_LONG llx; llx = lla + llb; return PyLong_FromLongLong(llx); } } #endif static PyObject* __Pyx_Float___Pyx_PyLong_AddObjC(PyObject *float_val, long intval, int zerodivision_check) { CYTHON_UNUSED_VAR(zerodivision_check); const long b = intval; double a = __Pyx_PyFloat_AS_DOUBLE(float_val); double result; result = ((double)a) + (double)b; return PyFloat_FromDouble(result); } static CYTHON_INLINE PyObject* __Pyx_PyLong_AddObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check) { CYTHON_MAYBE_UNUSED_VAR(intval); CYTHON_UNUSED_VAR(zerodivision_check); #if CYTHON_USE_PYLONG_INTERNALS if (likely(PyLong_CheckExact(op1))) { return __Pyx_Unpacked___Pyx_PyLong_AddObjC(op1, op2, intval, inplace, zerodivision_check); } #endif if (PyFloat_CheckExact(op1)) { return __Pyx_Float___Pyx_PyLong_AddObjC(op1, intval, zerodivision_check); } return __Pyx_Fallback___Pyx_PyLong_AddObjC(op1, op2, inplace); } #endif /* RaiseUnboundLocalError */ static void __Pyx_RaiseUnboundLocalError(const char *varname) { PyErr_Format(PyExc_UnboundLocalError, "local variable '%s' referenced before assignment", varname); } /* decode_c_bytes (used by decode_bytes) */ static CYTHON_INLINE PyObject* __Pyx_decode_c_bytes( const char* cstring, Py_ssize_t length, Py_ssize_t start, Py_ssize_t stop, const char* encoding, const char* errors, PyObject* (*decode_func)(const char *s, Py_ssize_t size, const char *errors)) { if (unlikely((start < 0) | (stop < 0))) { if (start < 0) { start += length; if (start < 0) start = 0; } if (stop < 0) stop += length; } if (stop > length) stop = length; if (unlikely(stop <= start)) return __Pyx_NewRef(__pyx_mstate_global->__pyx_empty_unicode); length = stop - start; cstring += start; if (decode_func) { return decode_func(cstring, length, errors); } else { return PyUnicode_Decode(cstring, length, encoding, errors); } } /* CIntToPyUnicode */ static CYTHON_INLINE PyObject* __Pyx_uchar___Pyx_PyUnicode_From_Py_ssize_t(Py_ssize_t value, Py_ssize_t width, char padding_char) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const Py_ssize_t neg_one = (Py_ssize_t) -1, const_zero = (Py_ssize_t) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; if (unlikely(!(is_unsigned || value == 0 || value > 0) || !(sizeof(value) <= 2 || value & ~ (Py_ssize_t) 0x01fffff || __Pyx_CheckUnicodeValue((int) value)))) { PyErr_SetString(PyExc_OverflowError, "%c arg not in range(0x110000)"); return NULL; } if (width <= 1) { return PyUnicode_FromOrdinal((int) value); } return __Pyx_PyUnicode_FromOrdinal_Padded((int) value, width, padding_char); } static CYTHON_INLINE PyObject* __Pyx____Pyx_PyUnicode_From_Py_ssize_t(Py_ssize_t value, Py_ssize_t width, char padding_char, char format_char) { char digits[sizeof(Py_ssize_t)*3+2]; char *dpos, *end = digits + sizeof(Py_ssize_t)*3+2; const char *hex_digits = DIGITS_HEX; Py_ssize_t length, ulength; int prepend_sign, last_one_off; Py_ssize_t remaining; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const Py_ssize_t neg_one = (Py_ssize_t) -1, const_zero = (Py_ssize_t) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; if (format_char == 'X') { hex_digits += 16; format_char = 'x'; } remaining = value; last_one_off = 0; dpos = end; do { int digit_pos; switch (format_char) { case 'o': digit_pos = abs((int)(remaining % (8*8))); remaining = (Py_ssize_t) (remaining / (8*8)); dpos -= 2; memcpy(dpos, DIGIT_PAIRS_8 + digit_pos * 2, 2); last_one_off = (digit_pos < 8); break; case 'd': digit_pos = abs((int)(remaining % (10*10))); remaining = (Py_ssize_t) (remaining / (10*10)); dpos -= 2; memcpy(dpos, DIGIT_PAIRS_10 + digit_pos * 2, 2); last_one_off = (digit_pos < 10); break; case 'x': *(--dpos) = hex_digits[abs((int)(remaining % 16))]; remaining = (Py_ssize_t) (remaining / 16); break; default: assert(0); break; } } while (unlikely(remaining != 0)); assert(!last_one_off || *dpos == '0'); dpos += last_one_off; length = end - dpos; ulength = length; prepend_sign = 0; if (!is_unsigned && value <= neg_one) { if (padding_char == ' ' || width <= length + 1) { *(--dpos) = '-'; ++length; } else { prepend_sign = 1; } ++ulength; } if (width > ulength) { ulength = width; } if (ulength == 1) { return PyUnicode_FromOrdinal(*dpos); } return __Pyx_PyUnicode_BuildFromAscii(ulength, dpos, (int) length, prepend_sign, padding_char); } /* UnicodeConcatInPlace */ # if CYTHON_COMPILING_IN_CPYTHON static int __Pyx_unicode_modifiable(PyObject *unicode, int unsafe_shared) { if (!__Pyx_IS_UNIQUELY_REFERENCED(unicode, unsafe_shared)) return 0; #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX > 0x030F0000 if (PyUnstable_Unicode_GET_CACHED_HASH(unicode) != -1) return 0; #endif if (!PyUnicode_CheckExact(unicode)) return 0; if (PyUnicode_CHECK_INTERNED(unicode)) return 0; return 1; } static CYTHON_INLINE PyObject *__Pyx_PyUnicode_ConcatInPlaceImpl(PyObject **p_left, PyObject *right, int unsafe_shared #if CYTHON_REFNANNY , void* __pyx_refnanny #endif ) { PyObject *left = *p_left; Py_ssize_t left_len, right_len, new_len; if (unlikely(__Pyx_PyUnicode_READY(left) == -1)) return NULL; if (unlikely(__Pyx_PyUnicode_READY(right) == -1)) return NULL; left_len = PyUnicode_GET_LENGTH(left); if (left_len == 0) { Py_INCREF(right); return right; } right_len = PyUnicode_GET_LENGTH(right); if (right_len == 0) { Py_INCREF(left); return left; } if (unlikely(left_len > PY_SSIZE_T_MAX - right_len)) { PyErr_SetString(PyExc_OverflowError, "strings are too large to concat"); return NULL; } new_len = left_len + right_len; if (__Pyx_unicode_modifiable(left, unsafe_shared) && PyUnicode_CheckExact(right) && PyUnicode_KIND(right) <= PyUnicode_KIND(left) && !(PyUnicode_IS_ASCII(left) && !PyUnicode_IS_ASCII(right))) { int ret; __Pyx_GIVEREF(*p_left); ret = PyUnicode_Resize(p_left, new_len); __Pyx_GOTREF(*p_left); if (unlikely(ret != 0)) return NULL; #if PY_VERSION_HEX >= 0x030d0000 if (unlikely(PyUnicode_CopyCharacters(*p_left, left_len, right, 0, right_len) < 0)) return NULL; #else _PyUnicode_FastCopyCharacters(*p_left, left_len, right, 0, right_len); #endif __Pyx_INCREF(*p_left); __Pyx_GIVEREF(*p_left); return *p_left; } else { return __Pyx_PyUnicode_Concat(left, right); } } #endif /* IsLittleEndian (used by BufferFormatCheck) */ static CYTHON_INLINE int __Pyx_Is_Little_Endian(void) { union { uint32_t u32; uint8_t u8[4]; } S; S.u32 = 0x01020304; return S.u8[0] == 4; } /* BufferFormatCheck (used by BufferGetAndValidate) */ static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, __Pyx_BufFmt_StackElem* stack, const __Pyx_TypeInfo* type) { stack[0].field = &ctx->root; stack[0].parent_offset = 0; ctx->root.type = type; ctx->root.name = "buffer dtype"; ctx->root.offset = 0; ctx->head = stack; ctx->head->field = &ctx->root; ctx->fmt_offset = 0; ctx->head->parent_offset = 0; ctx->new_packmode = '@'; ctx->enc_packmode = '@'; ctx->new_count = 1; ctx->enc_count = 0; ctx->enc_type = 0; ctx->is_complex = 0; ctx->is_valid_array = 0; ctx->struct_alignment = 0; while (type->typegroup == 'S') { ++ctx->head; ctx->head->field = type->fields; ctx->head->parent_offset = 0; type = type->fields->type; } } static int __Pyx_BufFmt_ParseNumber(const char** ts) { int count; const char* t = *ts; if (*t < '0' || *t > '9') { return -1; } else { count = *t++ - '0'; while (*t >= '0' && *t <= '9') { count *= 10; count += *t++ - '0'; } } *ts = t; return count; } static int __Pyx_BufFmt_ExpectNumber(const char **ts) { int number = __Pyx_BufFmt_ParseNumber(ts); if (number == -1) PyErr_Format(PyExc_ValueError,\ "Does not understand character buffer dtype format string ('%c')", **ts); return number; } static void __Pyx_BufFmt_RaiseUnexpectedChar(char ch) { PyErr_Format(PyExc_ValueError, "Unexpected format string character: '%c'", ch); } static const char* __Pyx_BufFmt_DescribeTypeChar(char ch, int is_complex) { switch (ch) { case '?': return "'bool'"; case 'c': return "'char'"; case 'b': return "'signed char'"; case 'B': return "'unsigned char'"; case 'h': return "'short'"; case 'H': return "'unsigned short'"; case 'i': return "'int'"; case 'I': return "'unsigned int'"; case 'l': return "'long'"; case 'L': return "'unsigned long'"; case 'q': return "'long long'"; case 'Q': return "'unsigned long long'"; case 'f': return (is_complex ? "'complex float'" : "'float'"); case 'd': return (is_complex ? "'complex double'" : "'double'"); case 'g': return (is_complex ? "'complex long double'" : "'long double'"); case 'T': return "a struct"; case 'O': return "Python object"; case 'P': return "a pointer"; case 's': case 'p': return "a string"; case 0: return "end"; default: return "unparsable format string"; } } static size_t __Pyx_BufFmt_TypeCharToStandardSize(char ch, int is_complex) { switch (ch) { case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; case 'h': case 'H': return 2; case 'i': case 'I': case 'l': case 'L': return 4; case 'q': case 'Q': return 8; case 'f': return (is_complex ? 8 : 4); case 'd': return (is_complex ? 16 : 8); case 'g': { PyErr_SetString(PyExc_ValueError, "Python does not define a standard format string size for long double ('g').."); return 0; } case 'O': case 'P': return sizeof(void*); default: __Pyx_BufFmt_RaiseUnexpectedChar(ch); return 0; } } static size_t __Pyx_BufFmt_TypeCharToNativeSize(char ch, int is_complex) { switch (ch) { case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; case 'h': case 'H': return sizeof(short); case 'i': case 'I': return sizeof(int); case 'l': case 'L': return sizeof(long); case 'q': case 'Q': return sizeof(PY_LONG_LONG); case 'f': return sizeof(float) * (is_complex ? 2 : 1); case 'd': return sizeof(double) * (is_complex ? 2 : 1); case 'g': return sizeof(long double) * (is_complex ? 2 : 1); case 'O': case 'P': return sizeof(void*); default: { __Pyx_BufFmt_RaiseUnexpectedChar(ch); return 0; } } } typedef struct { char c; short x; } __Pyx_st_short; typedef struct { char c; int x; } __Pyx_st_int; typedef struct { char c; long x; } __Pyx_st_long; typedef struct { char c; float x; } __Pyx_st_float; typedef struct { char c; double x; } __Pyx_st_double; typedef struct { char c; long double x; } __Pyx_st_longdouble; typedef struct { char c; void *x; } __Pyx_st_void_p; typedef struct { char c; PY_LONG_LONG x; } __Pyx_st_longlong; static size_t __Pyx_BufFmt_TypeCharToAlignment(char ch, int is_complex) { CYTHON_UNUSED_VAR(is_complex); switch (ch) { case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; case 'h': case 'H': return sizeof(__Pyx_st_short) - sizeof(short); case 'i': case 'I': return sizeof(__Pyx_st_int) - sizeof(int); case 'l': case 'L': return sizeof(__Pyx_st_long) - sizeof(long); case 'q': case 'Q': return sizeof(__Pyx_st_longlong) - sizeof(PY_LONG_LONG); case 'f': return sizeof(__Pyx_st_float) - sizeof(float); case 'd': return sizeof(__Pyx_st_double) - sizeof(double); case 'g': return sizeof(__Pyx_st_longdouble) - sizeof(long double); case 'P': case 'O': return sizeof(__Pyx_st_void_p) - sizeof(void*); default: __Pyx_BufFmt_RaiseUnexpectedChar(ch); return 0; } } /* These are for computing the padding at the end of the struct to align on the first member of the struct. This will probably the same as above, but we don't have any guarantees. */ typedef struct { short x; char c; } __Pyx_pad_short; typedef struct { int x; char c; } __Pyx_pad_int; typedef struct { long x; char c; } __Pyx_pad_long; typedef struct { float x; char c; } __Pyx_pad_float; typedef struct { double x; char c; } __Pyx_pad_double; typedef struct { long double x; char c; } __Pyx_pad_longdouble; typedef struct { void *x; char c; } __Pyx_pad_void_p; typedef struct { PY_LONG_LONG x; char c; } __Pyx_pad_longlong; static size_t __Pyx_BufFmt_TypeCharToPadding(char ch, int is_complex) { CYTHON_UNUSED_VAR(is_complex); switch (ch) { case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; case 'h': case 'H': return sizeof(__Pyx_pad_short) - sizeof(short); case 'i': case 'I': return sizeof(__Pyx_pad_int) - sizeof(int); case 'l': case 'L': return sizeof(__Pyx_pad_long) - sizeof(long); case 'q': case 'Q': return sizeof(__Pyx_pad_longlong) - sizeof(PY_LONG_LONG); case 'f': return sizeof(__Pyx_pad_float) - sizeof(float); case 'd': return sizeof(__Pyx_pad_double) - sizeof(double); case 'g': return sizeof(__Pyx_pad_longdouble) - sizeof(long double); case 'P': case 'O': return sizeof(__Pyx_pad_void_p) - sizeof(void*); default: __Pyx_BufFmt_RaiseUnexpectedChar(ch); return 0; } } static char __Pyx_BufFmt_TypeCharToGroup(char ch, int is_complex) { switch (ch) { case 'c': return 'H'; case 'b': case 'h': case 'i': case 'l': case 'q': case 's': case 'p': return 'I'; case '?': case 'B': case 'H': case 'I': case 'L': case 'Q': return 'U'; case 'f': case 'd': case 'g': return (is_complex ? 'C' : 'R'); case 'O': return 'O'; case 'P': return 'P'; default: { __Pyx_BufFmt_RaiseUnexpectedChar(ch); return 0; } } } static void __Pyx_BufFmt_RaiseExpected(__Pyx_BufFmt_Context* ctx) { if (ctx->head == NULL || ctx->head->field == &ctx->root) { const char* expected; const char* quote; if (ctx->head == NULL) { expected = "end"; quote = ""; } else { expected = ctx->head->field->type->name; quote = "'"; } PyErr_Format(PyExc_ValueError, "Buffer dtype mismatch, expected %s%s%s but got %s", quote, expected, quote, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex)); } else { const __Pyx_StructField* field = ctx->head->field; const __Pyx_StructField* parent = (ctx->head - 1)->field; PyErr_Format(PyExc_ValueError, "Buffer dtype mismatch, expected '%s' but got %s in '%s.%s'", field->type->name, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex), parent->type->name, field->name); } } static int __Pyx_BufFmt_ProcessTypeChunk(__Pyx_BufFmt_Context* ctx) { char group; size_t size, offset, arraysize = 1; if (ctx->enc_type == 0) return 0; if (ctx->head->field->type->arraysize[0]) { int i, ndim = 0; if (ctx->enc_type == 's' || ctx->enc_type == 'p') { ctx->is_valid_array = ctx->head->field->type->ndim == 1; ndim = 1; if (ctx->enc_count != ctx->head->field->type->arraysize[0]) { PyErr_Format(PyExc_ValueError, "Expected a dimension of size %zu, got %zu", ctx->head->field->type->arraysize[0], ctx->enc_count); return -1; } } if (!ctx->is_valid_array) { PyErr_Format(PyExc_ValueError, "Expected %d dimensions, got %d", ctx->head->field->type->ndim, ndim); return -1; } for (i = 0; i < ctx->head->field->type->ndim; i++) { arraysize *= ctx->head->field->type->arraysize[i]; } ctx->is_valid_array = 0; ctx->enc_count = 1; } group = __Pyx_BufFmt_TypeCharToGroup(ctx->enc_type, ctx->is_complex); do { const __Pyx_StructField* field = ctx->head->field; const __Pyx_TypeInfo* type = field->type; if (ctx->enc_packmode == '@' || ctx->enc_packmode == '^') { size = __Pyx_BufFmt_TypeCharToNativeSize(ctx->enc_type, ctx->is_complex); } else { size = __Pyx_BufFmt_TypeCharToStandardSize(ctx->enc_type, ctx->is_complex); } if (ctx->enc_packmode == '@') { size_t align_at = __Pyx_BufFmt_TypeCharToAlignment(ctx->enc_type, ctx->is_complex); size_t align_mod_offset; if (align_at == 0) return -1; align_mod_offset = ctx->fmt_offset % align_at; if (align_mod_offset > 0) ctx->fmt_offset += align_at - align_mod_offset; if (ctx->struct_alignment == 0) ctx->struct_alignment = __Pyx_BufFmt_TypeCharToPadding(ctx->enc_type, ctx->is_complex); } if (type->size != size || type->typegroup != group) { if (type->typegroup == 'C' && type->fields != NULL) { size_t parent_offset = ctx->head->parent_offset + field->offset; ++ctx->head; ctx->head->field = type->fields; ctx->head->parent_offset = parent_offset; continue; } if ((type->typegroup == 'H' || group == 'H') && type->size == size) { } else { __Pyx_BufFmt_RaiseExpected(ctx); return -1; } } offset = ctx->head->parent_offset + field->offset; if (ctx->fmt_offset != offset) { PyErr_Format(PyExc_ValueError, "Buffer dtype mismatch; next field is at offset %" CYTHON_FORMAT_SSIZE_T "d but %" CYTHON_FORMAT_SSIZE_T "d expected", (Py_ssize_t)ctx->fmt_offset, (Py_ssize_t)offset); return -1; } ctx->fmt_offset += size; if (arraysize) ctx->fmt_offset += (arraysize - 1) * size; --ctx->enc_count; while (1) { if (field == &ctx->root) { ctx->head = NULL; if (ctx->enc_count != 0) { __Pyx_BufFmt_RaiseExpected(ctx); return -1; } break; } ctx->head->field = ++field; if (field->type == NULL) { --ctx->head; field = ctx->head->field; continue; } else if (field->type->typegroup == 'S') { size_t parent_offset = ctx->head->parent_offset + field->offset; if (field->type->fields->type == NULL) continue; field = field->type->fields; ++ctx->head; ctx->head->field = field; ctx->head->parent_offset = parent_offset; break; } else { break; } } } while (ctx->enc_count); ctx->enc_type = 0; ctx->is_complex = 0; return 0; } static int __pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp) { const char *ts = *tsp; int i = 0, number, ndim; ++ts; if (ctx->new_count != 1) { PyErr_SetString(PyExc_ValueError, "Cannot handle repeated arrays in format string"); return -1; } if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return -1; ndim = ctx->head->field->type->ndim; while (*ts && *ts != ')') { switch (*ts) { case ' ': case '\f': case '\r': case '\n': case '\t': case '\v': continue; default: break; } number = __Pyx_BufFmt_ExpectNumber(&ts); if (number == -1) return -1; if (i < ndim && (size_t) number != ctx->head->field->type->arraysize[i]) { PyErr_Format(PyExc_ValueError, "Expected a dimension of size %zu, got %d", ctx->head->field->type->arraysize[i], number); return -1; } if (*ts != ',' && *ts != ')') { PyErr_Format(PyExc_ValueError, "Expected a comma in format string, got '%c'", *ts); return -1; } if (*ts == ',') ts++; i++; } if (i != ndim) { PyErr_Format(PyExc_ValueError, "Expected %d dimension(s), got %d", ctx->head->field->type->ndim, i); return -1; } if (!*ts) { PyErr_SetString(PyExc_ValueError, "Unexpected end of format string, expected ')'"); return -1; } ctx->is_valid_array = 1; ctx->new_count = 1; *tsp = ++ts; return 0; } static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts) { int got_Z = 0; while (1) { switch(*ts) { case 0: if (ctx->enc_type != 0 && ctx->head == NULL) { __Pyx_BufFmt_RaiseExpected(ctx); return NULL; } if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; if (ctx->head != NULL) { __Pyx_BufFmt_RaiseExpected(ctx); return NULL; } return ts; case ' ': case '\r': case '\n': ++ts; break; case '<': if (!__Pyx_Is_Little_Endian()) { PyErr_SetString(PyExc_ValueError, "Little-endian buffer not supported on big-endian compiler"); return NULL; } ctx->new_packmode = '='; ++ts; break; case '>': case '!': if (__Pyx_Is_Little_Endian()) { PyErr_SetString(PyExc_ValueError, "Big-endian buffer not supported on little-endian compiler"); return NULL; } ctx->new_packmode = '='; ++ts; break; case '=': case '@': case '^': ctx->new_packmode = *ts++; break; case 'T': { const char* ts_after_sub; size_t i, struct_count = ctx->new_count; size_t struct_alignment = ctx->struct_alignment; ctx->new_count = 1; ++ts; if (*ts != '{') { PyErr_SetString(PyExc_ValueError, "Buffer acquisition: Expected '{' after 'T'"); return NULL; } if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; ctx->enc_type = 0; ctx->enc_count = 0; ctx->struct_alignment = 0; ++ts; ts_after_sub = ts; for (i = 0; i != struct_count; ++i) { ts_after_sub = __Pyx_BufFmt_CheckString(ctx, ts); if (!ts_after_sub) return NULL; } ts = ts_after_sub; if (struct_alignment) ctx->struct_alignment = struct_alignment; } break; case '}': { size_t alignment = ctx->struct_alignment; ++ts; if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; ctx->enc_type = 0; if (alignment && ctx->fmt_offset % alignment) { ctx->fmt_offset += alignment - (ctx->fmt_offset % alignment); } } return ts; case 'x': if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; ctx->fmt_offset += ctx->new_count; ctx->new_count = 1; ctx->enc_count = 0; ctx->enc_type = 0; ctx->enc_packmode = ctx->new_packmode; ++ts; break; case 'Z': got_Z = 1; ++ts; if (*ts != 'f' && *ts != 'd' && *ts != 'g') { __Pyx_BufFmt_RaiseUnexpectedChar('Z'); return NULL; } CYTHON_FALLTHROUGH; case '?': case 'c': case 'b': case 'B': case 'h': case 'H': case 'i': case 'I': case 'l': case 'L': case 'q': case 'Q': case 'f': case 'd': case 'g': case 'O': case 'p': if ((ctx->enc_type == *ts) && (got_Z == ctx->is_complex) && (ctx->enc_packmode == ctx->new_packmode) && (!ctx->is_valid_array)) { ctx->enc_count += ctx->new_count; ctx->new_count = 1; got_Z = 0; ++ts; break; } CYTHON_FALLTHROUGH; case 's': if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; ctx->enc_count = ctx->new_count; ctx->enc_packmode = ctx->new_packmode; ctx->enc_type = *ts; ctx->is_complex = got_Z; ++ts; ctx->new_count = 1; got_Z = 0; break; case ':': ++ts; while(*ts != ':') ++ts; ++ts; break; case '(': if (__pyx_buffmt_parse_array(ctx, &ts) < 0) return NULL; break; default: { int number = __Pyx_BufFmt_ExpectNumber(&ts); if (number == -1) return NULL; ctx->new_count = (size_t)number; } } } } /* BufferGetAndValidate */ static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) { if (unlikely(info->buf == NULL)) return; if (info->suboffsets == __Pyx_minusones) info->suboffsets = NULL; PyBuffer_Release(info); } static void __Pyx_ZeroBuffer(Py_buffer* buf) { buf->buf = NULL; buf->obj = NULL; buf->strides = __Pyx_zeros; buf->shape = __Pyx_zeros; buf->suboffsets = __Pyx_minusones; } static int __Pyx__GetBufferAndValidate( Py_buffer* buf, PyObject* obj, const __Pyx_TypeInfo* dtype, int flags, int nd, int cast, __Pyx_BufFmt_StackElem* stack) { buf->buf = NULL; if (unlikely(PyObject_GetBuffer(obj, buf, flags) == -1)) { __Pyx_ZeroBuffer(buf); return -1; } if (unlikely(buf->ndim != nd)) { PyErr_Format(PyExc_ValueError, "Buffer has wrong number of dimensions (expected %d, got %d)", nd, buf->ndim); goto fail; } if (!cast) { __Pyx_BufFmt_Context ctx; __Pyx_BufFmt_Init(&ctx, stack, dtype); if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail; } if (unlikely((size_t)buf->itemsize != dtype->size)) { PyErr_Format(PyExc_ValueError, "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "d byte%s) does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "d byte%s)", buf->itemsize, (buf->itemsize > 1) ? "s" : "", dtype->name, (Py_ssize_t)dtype->size, (dtype->size > 1) ? "s" : ""); goto fail; } if (buf->suboffsets == NULL) buf->suboffsets = __Pyx_minusones; return 0; fail:; __Pyx_SafeReleaseBuffer(buf); return -1; } /* BufferIndexError */ static void __Pyx_RaiseBufferIndexError(int axis) { PyErr_Format(PyExc_IndexError, "Out of bounds on buffer access (axis %d)", axis); } /* PyLongBinop */ #if !CYTHON_COMPILING_IN_PYPY static PyObject* __Pyx_Fallback___Pyx_PyLong_MultiplyCObj(PyObject *op1, PyObject *op2, int inplace) { return (inplace ? PyNumber_InPlaceMultiply : PyNumber_Multiply)(op1, op2); } #if CYTHON_USE_PYLONG_INTERNALS static PyObject* __Pyx_Unpacked___Pyx_PyLong_MultiplyCObj(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check) { CYTHON_MAYBE_UNUSED_VAR(inplace); CYTHON_UNUSED_VAR(zerodivision_check); const long a = intval; long b; const PY_LONG_LONG lla = intval; PY_LONG_LONG llb; if (unlikely(__Pyx_PyLong_IsZero(op2))) { return __Pyx_NewRef(op2); } const int is_positive = __Pyx_PyLong_IsPos(op2); const digit* digits = __Pyx_PyLong_Digits(op2); const Py_ssize_t size = __Pyx_PyLong_DigitCount(op2); if (likely(size == 1)) { b = (long) digits[0]; if (!is_positive) b *= -1; } else { switch (size) { case 2: if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT+30) { b = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); if (!is_positive) b *= -1; goto calculate_long; } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT+30) { llb = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); if (!is_positive) llb *= -1; goto calculate_long_long; } break; case 3: if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT+30) { b = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); if (!is_positive) b *= -1; goto calculate_long; } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT+30) { llb = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); if (!is_positive) llb *= -1; goto calculate_long_long; } break; case 4: if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT+30) { b = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); if (!is_positive) b *= -1; goto calculate_long; } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT+30) { llb = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); if (!is_positive) llb *= -1; goto calculate_long_long; } break; } return PyLong_Type.tp_as_number->nb_multiply(op1, op2); } calculate_long: CYTHON_UNUSED_VAR(a); CYTHON_UNUSED_VAR(b); llb = b; goto calculate_long_long; calculate_long_long: { PY_LONG_LONG llx; llx = lla * llb; return PyLong_FromLongLong(llx); } } #endif static PyObject* __Pyx_Float___Pyx_PyLong_MultiplyCObj(PyObject *float_val, long intval, int zerodivision_check) { CYTHON_UNUSED_VAR(zerodivision_check); const long a = intval; double b = __Pyx_PyFloat_AS_DOUBLE(float_val); double result; result = ((double)a) * (double)b; return PyFloat_FromDouble(result); } static CYTHON_INLINE PyObject* __Pyx_PyLong_MultiplyCObj(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check) { CYTHON_MAYBE_UNUSED_VAR(intval); CYTHON_UNUSED_VAR(zerodivision_check); #if CYTHON_USE_PYLONG_INTERNALS if (likely(PyLong_CheckExact(op2))) { return __Pyx_Unpacked___Pyx_PyLong_MultiplyCObj(op1, op2, intval, inplace, zerodivision_check); } #endif if (PyFloat_CheckExact(op2)) { return __Pyx_Float___Pyx_PyLong_MultiplyCObj(op2, intval, zerodivision_check); } return __Pyx_Fallback___Pyx_PyLong_MultiplyCObj(op1, op2, inplace); } #endif /* PySequenceMultiply */ #if CYTHON_USE_TYPE_SLOTS static PyObject* __Pyx_PySequence_Multiply_Generic(PyObject *seq, Py_ssize_t mul) { PyObject *result, *pymul = PyLong_FromSsize_t(mul); if (unlikely(!pymul)) return NULL; result = PyNumber_Multiply(seq, pymul); Py_DECREF(pymul); return result; } static CYTHON_INLINE PyObject* __Pyx_PySequence_Multiply(PyObject *seq, Py_ssize_t mul) { PyTypeObject *type = Py_TYPE(seq); if (likely(type->tp_as_sequence && type->tp_as_sequence->sq_repeat)) { return type->tp_as_sequence->sq_repeat(seq, mul); } else { return __Pyx_PySequence_Multiply_Generic(seq, mul); } } #endif /* BufferFallbackError */ static void __Pyx_RaiseBufferFallbackError(void) { PyErr_SetString(PyExc_ValueError, "Buffer acquisition failed on assignment; and then reacquiring the old buffer failed too!"); } /* CIntToPyUnicode */ static CYTHON_INLINE PyObject* __Pyx_uchar___Pyx_PyUnicode_From_int(int value, Py_ssize_t width, char padding_char) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const int neg_one = (int) -1, const_zero = (int) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; if (unlikely(!(is_unsigned || value == 0 || value > 0) || !(sizeof(value) <= 2 || value & ~ (int) 0x01fffff || __Pyx_CheckUnicodeValue((int) value)))) { PyErr_SetString(PyExc_OverflowError, "%c arg not in range(0x110000)"); return NULL; } if (width <= 1) { return PyUnicode_FromOrdinal((int) value); } return __Pyx_PyUnicode_FromOrdinal_Padded((int) value, width, padding_char); } static CYTHON_INLINE PyObject* __Pyx____Pyx_PyUnicode_From_int(int value, Py_ssize_t width, char padding_char, char format_char) { char digits[sizeof(int)*3+2]; char *dpos, *end = digits + sizeof(int)*3+2; const char *hex_digits = DIGITS_HEX; Py_ssize_t length, ulength; int prepend_sign, last_one_off; int remaining; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const int neg_one = (int) -1, const_zero = (int) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; if (format_char == 'X') { hex_digits += 16; format_char = 'x'; } remaining = value; last_one_off = 0; dpos = end; do { int digit_pos; switch (format_char) { case 'o': digit_pos = abs((int)(remaining % (8*8))); remaining = (int) (remaining / (8*8)); dpos -= 2; memcpy(dpos, DIGIT_PAIRS_8 + digit_pos * 2, 2); last_one_off = (digit_pos < 8); break; case 'd': digit_pos = abs((int)(remaining % (10*10))); remaining = (int) (remaining / (10*10)); dpos -= 2; memcpy(dpos, DIGIT_PAIRS_10 + digit_pos * 2, 2); last_one_off = (digit_pos < 10); break; case 'x': *(--dpos) = hex_digits[abs((int)(remaining % 16))]; remaining = (int) (remaining / 16); break; default: assert(0); break; } } while (unlikely(remaining != 0)); assert(!last_one_off || *dpos == '0'); dpos += last_one_off; length = end - dpos; ulength = length; prepend_sign = 0; if (!is_unsigned && value <= neg_one) { if (padding_char == ' ' || width <= length + 1) { *(--dpos) = '-'; ++length; } else { prepend_sign = 1; } ++ulength; } if (width > ulength) { ulength = width; } if (ulength == 1) { return PyUnicode_FromOrdinal(*dpos); } return __Pyx_PyUnicode_BuildFromAscii(ulength, dpos, (int) length, prepend_sign, padding_char); } /* GetAttr3 */ #if __PYX_LIMITED_VERSION_HEX < 0x030d0000 static PyObject *__Pyx_GetAttr3Default(PyObject *d) { __Pyx_PyThreadState_declare __Pyx_PyThreadState_assign if (unlikely(!__Pyx_PyErr_ExceptionMatches(PyExc_AttributeError))) return NULL; __Pyx_PyErr_Clear(); Py_INCREF(d); return d; } #endif static CYTHON_INLINE PyObject *__Pyx_GetAttr3(PyObject *o, PyObject *n, PyObject *d) { PyObject *r; #if __PYX_LIMITED_VERSION_HEX >= 0x030d0000 int res = PyObject_GetOptionalAttr(o, n, &r); return (res != 0) ? r : __Pyx_NewRef(d); #else #if CYTHON_USE_TYPE_SLOTS if (likely(PyUnicode_Check(n))) { r = __Pyx_PyObject_GetAttrStrNoError(o, n); if (unlikely(!r) && likely(!PyErr_Occurred())) { r = __Pyx_NewRef(d); } return r; } #endif r = PyObject_GetAttr(o, n); return (likely(r)) ? r : __Pyx_GetAttr3Default(d); #endif } /* ModInt[Py_ssize_t] */ static CYTHON_INLINE Py_ssize_t __Pyx_mod_Py_ssize_t(Py_ssize_t a, Py_ssize_t b, int b_is_constant) { Py_ssize_t r = a % b; Py_ssize_t adapt_python = (b_is_constant ? ((r != 0) & ((r < 0) ^ (b < 0))) : ((r != 0) & ((r ^ b) < 0)) ); return r + adapt_python * b; } /* DivInt[Py_ssize_t] */ static CYTHON_INLINE Py_ssize_t __Pyx_div_Py_ssize_t(Py_ssize_t a, Py_ssize_t b, int b_is_constant) { Py_ssize_t q = a / b; Py_ssize_t r = a - q*b; Py_ssize_t adapt_python = (b_is_constant ? ((r != 0) & ((r < 0) ^ (b < 0))) : ((r != 0) & ((r ^ b) < 0)) ); return q - adapt_python; } /* SetStringIndexingError (used by GetItemIntUnicode) */ static void __Pyx_SetStringIndexingError(const char* message, int has_gil) { if (!has_gil) { PyGILState_STATE gil_state = PyGILState_Ensure(); PyErr_SetString(PyExc_IndexError, message); PyGILState_Release(gil_state); } else PyErr_SetString(PyExc_IndexError, message); } /* GetItemIntUnicode */ static CYTHON_INLINE Py_UCS4 __Pyx_GetItemInt_Unicode_Fast(PyObject* ustring, Py_ssize_t i, int wraparound, int boundscheck, int has_gil) { Py_ssize_t length; if (unlikely(__Pyx_PyUnicode_READY(ustring) < 0)) return (Py_UCS4)-1; if (wraparound | boundscheck) { length = __Pyx_PyUnicode_GET_LENGTH(ustring); #if !CYTHON_ASSUME_SAFE_SIZE if (unlikely(length < 0)) return (Py_UCS4)-1; #endif if (wraparound & unlikely(i < 0)) i += length; if ((!boundscheck) || likely(__Pyx_is_valid_index(i, length))) { return __Pyx_PyUnicode_READ_CHAR(ustring, i); } else { __Pyx_SetStringIndexingError("string index out of range", has_gil); return (Py_UCS4)-1; } } else { return __Pyx_PyUnicode_READ_CHAR(ustring, i); } } /* PyUnicode_Substring */ static CYTHON_INLINE PyObject* __Pyx_PyUnicode_Substring( PyObject* text, Py_ssize_t start, Py_ssize_t stop) { Py_ssize_t length; #if !CYTHON_COMPILING_IN_LIMITED_API if (unlikely(__Pyx_PyUnicode_READY(text) == -1)) return NULL; #endif length = __Pyx_PyUnicode_GET_LENGTH(text); #if !CYTHON_ASSUME_SAFE_SIZE if (unlikely(length < 0)) return NULL; #endif if (start < 0) { start += length; if (start < 0) start = 0; } if (stop < 0) stop += length; else if (stop > length) stop = length; if (stop <= start) return __Pyx_NewRef(__pyx_mstate_global->__pyx_empty_unicode); if (start == 0 && stop == length) return __Pyx_NewRef(text); #if CYTHON_COMPILING_IN_LIMITED_API return PyUnicode_Substring(text, start, stop); #else return PyUnicode_FromKindAndData(PyUnicode_KIND(text), PyUnicode_1BYTE_DATA(text) + start*PyUnicode_KIND(text), stop-start); #endif } /* PyLongCompare */ static CYTHON_INLINE int __Pyx_PyLong_BoolNeObjC(PyObject *op1, PyObject *op2, long intval, long inplace) { CYTHON_MAYBE_UNUSED_VAR(intval); CYTHON_UNUSED_VAR(inplace); if (op1 == op2) { return 0; } #if CYTHON_USE_PYLONG_INTERNALS if (likely(PyLong_CheckExact(op1))) { int unequal; unsigned long uintval; Py_ssize_t size = __Pyx_PyLong_DigitCount(op1); const digit* digits = __Pyx_PyLong_Digits(op1); if (intval == 0) { return (__Pyx_PyLong_IsZero(op1) != 1); } else if (intval < 0) { if (__Pyx_PyLong_IsNonNeg(op1)) return 1; intval = -intval; } else { if (__Pyx_PyLong_IsNeg(op1)) return 1; } uintval = (unsigned long) intval; #if PyLong_SHIFT * 4 < SIZEOF_LONG*8 if (uintval >> (PyLong_SHIFT * 4)) { unequal = (size != 5) || (digits[0] != (uintval & (unsigned long) PyLong_MASK)) | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[4] != ((uintval >> (4 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)); } else #endif #if PyLong_SHIFT * 3 < SIZEOF_LONG*8 if (uintval >> (PyLong_SHIFT * 3)) { unequal = (size != 4) || (digits[0] != (uintval & (unsigned long) PyLong_MASK)) | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)); } else #endif #if PyLong_SHIFT * 2 < SIZEOF_LONG*8 if (uintval >> (PyLong_SHIFT * 2)) { unequal = (size != 3) || (digits[0] != (uintval & (unsigned long) PyLong_MASK)) | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)); } else #endif #if PyLong_SHIFT * 1 < SIZEOF_LONG*8 if (uintval >> (PyLong_SHIFT * 1)) { unequal = (size != 2) || (digits[0] != (uintval & (unsigned long) PyLong_MASK)) | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)); } else #endif unequal = (size != 1) || (((unsigned long) digits[0]) != (uintval & (unsigned long) PyLong_MASK)); return (unequal != 0); } #endif if (PyFloat_CheckExact(op1)) { const long b = intval; double a = __Pyx_PyFloat_AS_DOUBLE(op1); return ((double)a != (double)b); } return __Pyx_PyObject_IsTrueAndDecref( PyObject_RichCompare(op1, op2, Py_NE)); } /* GetItemIntBytes */ static CYTHON_INLINE int __Pyx_GetItemInt_Bytes_Fast(PyObject* bytes, Py_ssize_t index, int wraparound, int boundscheck, int has_gil) { const unsigned char *c_string; if (wraparound && index < 0) { Py_ssize_t size = __Pyx_PyBytes_GET_SIZE(bytes); #if !CYTHON_ASSUME_SAFE_SIZE if (unlikely(size < 0)) return -1; #endif index += size; } if (boundscheck) { Py_ssize_t size = __Pyx_PyBytes_GET_SIZE(bytes); #if !CYTHON_ASSUME_SAFE_SIZE if (unlikely(size < 0)) return -1; #endif if (unlikely(!__Pyx_is_valid_index(index, size))) { __Pyx_SetStringIndexingError("string index out of range", has_gil); return -1; } } c_string = __Pyx_PyBytes_AsUString(bytes); #if !CYTHON_ASSUME_SAFE_MACROS if (unlikely(!c_string)) return -1; #endif return (int) c_string[index]; } /* AllocateExtensionType */ static PyObject *__Pyx_AllocateExtensionType(PyTypeObject *t, int is_final) { if (is_final || likely(!__Pyx_PyType_HasFeature(t, Py_TPFLAGS_IS_ABSTRACT))) { allocfunc alloc_func = __Pyx_PyType_GetSlot(t, tp_alloc, allocfunc); return alloc_func(t, 0); } else { newfunc tp_new = __Pyx_PyType_TryGetSlot(&PyBaseObject_Type, tp_new, newfunc); #if CYTHON_COMPILING_IN_LIMITED_API && __PYX_LIMITED_VERSION_HEX < 0x030A0000 if (!tp_new) { PyObject *new_str = PyUnicode_FromString("__new__"); if (likely(new_str)) { PyObject *o = PyObject_CallMethodObjArgs((PyObject *)&PyBaseObject_Type, new_str, t, NULL); Py_DECREF(new_str); return o; } else return NULL; } else #endif return tp_new(t, __pyx_mstate_global->__pyx_empty_tuple, 0); } } /* CallNextTpTraverse */ static int __Pyx_call_next_tp_traverse(PyObject* obj, visitproc v, void *a, traverseproc current_tp_traverse) { PyTypeObject* type = Py_TYPE(obj); traverseproc tp_traverse = NULL; while (type && __Pyx_PyType_GetSlot(type, tp_traverse, traverseproc) != current_tp_traverse) type = __Pyx_PyType_GetSlot(type, tp_base, PyTypeObject*); while (type && (tp_traverse = __Pyx_PyType_GetSlot(type, tp_traverse, traverseproc)) == current_tp_traverse) type = __Pyx_PyType_GetSlot(type, tp_base, PyTypeObject*); if (type && tp_traverse) return tp_traverse(obj, v, a); return 0; } /* CallNextTpClear */ static void __Pyx_call_next_tp_clear(PyObject* obj, inquiry current_tp_clear) { PyTypeObject* type = Py_TYPE(obj); inquiry tp_clear = NULL; while (type && __Pyx_PyType_GetSlot(type, tp_clear, inquiry) != current_tp_clear) type = __Pyx_PyType_GetSlot(type, tp_base, PyTypeObject*); while (type && (tp_clear = __Pyx_PyType_GetSlot(type, tp_clear, inquiry)) == current_tp_clear) type = __Pyx_PyType_GetSlot(type, tp_base, PyTypeObject*); if (type && tp_clear) tp_clear(obj); } /* ValidateBasesTuple (used by PyType_Ready) */ #if CYTHON_COMPILING_IN_CPYTHON || CYTHON_COMPILING_IN_LIMITED_API || CYTHON_USE_TYPE_SPECS static int __Pyx_validate_bases_tuple(const char *type_name, Py_ssize_t dictoffset, PyObject *bases) { Py_ssize_t i, n; #if CYTHON_ASSUME_SAFE_SIZE n = PyTuple_GET_SIZE(bases); #else n = PyTuple_Size(bases); if (unlikely(n < 0)) return -1; #endif for (i = 1; i < n; i++) { PyTypeObject *b; #if CYTHON_AVOID_BORROWED_REFS PyObject *b0 = PySequence_GetItem(bases, i); if (!b0) return -1; #elif CYTHON_ASSUME_SAFE_MACROS PyObject *b0 = PyTuple_GET_ITEM(bases, i); #else PyObject *b0 = PyTuple_GetItem(bases, i); if (!b0) return -1; #endif b = (PyTypeObject*) b0; if (!__Pyx_PyType_HasFeature(b, Py_TPFLAGS_HEAPTYPE)) { __Pyx_TypeName b_name = __Pyx_PyType_GetFullyQualifiedName(b); PyErr_Format(PyExc_TypeError, "base class '" __Pyx_FMT_TYPENAME "' is not a heap type", b_name); __Pyx_DECREF_TypeName(b_name); #if CYTHON_AVOID_BORROWED_REFS Py_DECREF(b0); #endif return -1; } if (dictoffset == 0) { Py_ssize_t b_dictoffset = 0; #if CYTHON_USE_TYPE_SLOTS b_dictoffset = b->tp_dictoffset; #else PyObject *py_b_dictoffset = PyObject_GetAttrString((PyObject*)b, "__dictoffset__"); if (!py_b_dictoffset) goto dictoffset_return; b_dictoffset = PyLong_AsSsize_t(py_b_dictoffset); Py_DECREF(py_b_dictoffset); if (b_dictoffset == -1 && PyErr_Occurred()) goto dictoffset_return; #endif if (b_dictoffset) { { __Pyx_TypeName b_name = __Pyx_PyType_GetFullyQualifiedName(b); PyErr_Format(PyExc_TypeError, "extension type '%.200s' has no __dict__ slot, " "but base type '" __Pyx_FMT_TYPENAME "' has: " "either add 'cdef dict __dict__' to the extension type " "or add '__slots__ = [...]' to the base type", type_name, b_name); __Pyx_DECREF_TypeName(b_name); } #if !CYTHON_USE_TYPE_SLOTS dictoffset_return: #endif #if CYTHON_AVOID_BORROWED_REFS Py_DECREF(b0); #endif return -1; } } #if CYTHON_AVOID_BORROWED_REFS Py_DECREF(b0); #endif } return 0; } #endif /* PyType_Ready */ CYTHON_UNUSED static int __Pyx_PyType_HasMultipleInheritance(PyTypeObject *t) { while (t) { PyObject *bases = __Pyx_PyType_GetSlot(t, tp_bases, PyObject*); if (bases) { return 1; } t = __Pyx_PyType_GetSlot(t, tp_base, PyTypeObject*); } return 0; } static int __Pyx_PyType_Ready(PyTypeObject *t) { #if CYTHON_USE_TYPE_SPECS || !CYTHON_COMPILING_IN_CPYTHON || defined(PYSTON_MAJOR_VERSION) (void)__Pyx_PyObject_CallMethod0; #if CYTHON_USE_TYPE_SPECS (void)__Pyx_validate_bases_tuple; #endif return PyType_Ready(t); #else int r; if (!__Pyx_PyType_HasMultipleInheritance(t)) { return PyType_Ready(t); } PyObject *bases = __Pyx_PyType_GetSlot(t, tp_bases, PyObject*); if (bases && unlikely(__Pyx_validate_bases_tuple(t->tp_name, t->tp_dictoffset, bases) == -1)) return -1; #if !defined(PYSTON_MAJOR_VERSION) { int gc_was_enabled; #if PY_VERSION_HEX >= 0x030A00b1 gc_was_enabled = PyGC_Disable(); (void)__Pyx_PyObject_CallMethod0; #else PyObject *ret, *py_status; PyObject *gc = NULL; #if (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM+0 >= 0x07030400) &&\ !CYTHON_COMPILING_IN_GRAAL gc = PyImport_GetModule(__pyx_mstate_global->__pyx_kp_u_gc); #endif if (unlikely(!gc)) gc = PyImport_Import(__pyx_mstate_global->__pyx_kp_u_gc); if (unlikely(!gc)) return -1; py_status = __Pyx_PyObject_CallMethod0(gc, __pyx_mstate_global->__pyx_kp_u_isenabled); if (unlikely(!py_status)) { Py_DECREF(gc); return -1; } gc_was_enabled = __Pyx_PyObject_IsTrue(py_status); Py_DECREF(py_status); if (gc_was_enabled > 0) { ret = __Pyx_PyObject_CallMethod0(gc, __pyx_mstate_global->__pyx_kp_u_disable); if (unlikely(!ret)) { Py_DECREF(gc); return -1; } Py_DECREF(ret); } else if (unlikely(gc_was_enabled == -1)) { Py_DECREF(gc); return -1; } #endif t->tp_flags |= Py_TPFLAGS_HEAPTYPE; #if PY_VERSION_HEX >= 0x030A0000 t->tp_flags |= Py_TPFLAGS_IMMUTABLETYPE; #endif #else (void)__Pyx_PyObject_CallMethod0; #endif r = PyType_Ready(t); #if !defined(PYSTON_MAJOR_VERSION) t->tp_flags &= ~Py_TPFLAGS_HEAPTYPE; #if PY_VERSION_HEX >= 0x030A00b1 if (gc_was_enabled) PyGC_Enable(); #else if (gc_was_enabled) { PyObject *tp, *v, *tb; PyErr_Fetch(&tp, &v, &tb); ret = __Pyx_PyObject_CallMethod0(gc, __pyx_mstate_global->__pyx_kp_u_enable); if (likely(ret || r == -1)) { Py_XDECREF(ret); PyErr_Restore(tp, v, tb); } else { Py_XDECREF(tp); Py_XDECREF(v); Py_XDECREF(tb); r = -1; } } Py_DECREF(gc); #endif } #endif return r; #endif } /* SetVTable */ static int __Pyx_SetVtable(PyTypeObject *type, void *vtable) { PyObject *ob = PyCapsule_New(vtable, 0, 0); if (unlikely(!ob)) goto bad; #if CYTHON_COMPILING_IN_LIMITED_API if (unlikely(PyObject_SetAttr((PyObject *) type, __pyx_mstate_global->__pyx_n_u_pyx_vtable, ob) < 0)) #else if (unlikely(PyDict_SetItem(type->tp_dict, __pyx_mstate_global->__pyx_n_u_pyx_vtable, ob) < 0)) #endif goto bad; Py_DECREF(ob); return 0; bad: Py_XDECREF(ob); return -1; } /* GetVTable (used by MergeVTables) */ static void* __Pyx_GetVtable(PyTypeObject *type) { void* ptr; #if CYTHON_COMPILING_IN_LIMITED_API PyObject *ob = PyObject_GetAttr((PyObject *)type, __pyx_mstate_global->__pyx_n_u_pyx_vtable); #else PyObject *ob = PyObject_GetItem(type->tp_dict, __pyx_mstate_global->__pyx_n_u_pyx_vtable); #endif if (!ob) goto bad; ptr = PyCapsule_GetPointer(ob, 0); if (!ptr && !PyErr_Occurred()) PyErr_SetString(PyExc_RuntimeError, "invalid vtable found for imported type"); Py_DECREF(ob); return ptr; bad: Py_XDECREF(ob); return NULL; } /* MergeVTables */ static int __Pyx_MergeVtables(PyTypeObject *type) { int i=0; Py_ssize_t size; void** base_vtables; __Pyx_TypeName tp_base_name = NULL; __Pyx_TypeName base_name = NULL; void* unknown = (void*)-1; PyObject* bases = __Pyx_PyType_GetSlot(type, tp_bases, PyObject*); int base_depth = 0; { PyTypeObject* base = __Pyx_PyType_GetSlot(type, tp_base, PyTypeObject*); while (base) { base_depth += 1; base = __Pyx_PyType_GetSlot(base, tp_base, PyTypeObject*); } } base_vtables = (void**) PyMem_Malloc(sizeof(void*) * (size_t)(base_depth + 1)); base_vtables[0] = unknown; #if CYTHON_COMPILING_IN_LIMITED_API size = PyTuple_Size(bases); if (size < 0) goto other_failure; #else size = PyTuple_GET_SIZE(bases); #endif for (i = 1; i < size; i++) { PyObject *basei; void* base_vtable; #if CYTHON_AVOID_BORROWED_REFS basei = PySequence_GetItem(bases, i); if (unlikely(!basei)) goto other_failure; #elif !CYTHON_ASSUME_SAFE_MACROS basei = PyTuple_GetItem(bases, i); if (unlikely(!basei)) goto other_failure; #else basei = PyTuple_GET_ITEM(bases, i); #endif base_vtable = __Pyx_GetVtable((PyTypeObject*)basei); #if CYTHON_AVOID_BORROWED_REFS Py_DECREF(basei); #endif if (base_vtable != NULL) { int j; PyTypeObject* base = __Pyx_PyType_GetSlot(type, tp_base, PyTypeObject*); for (j = 0; j < base_depth; j++) { if (base_vtables[j] == unknown) { base_vtables[j] = __Pyx_GetVtable(base); base_vtables[j + 1] = unknown; } if (base_vtables[j] == base_vtable) { break; } else if (base_vtables[j] == NULL) { goto bad; } base = __Pyx_PyType_GetSlot(base, tp_base, PyTypeObject*); } } } PyErr_Clear(); PyMem_Free(base_vtables); return 0; bad: { PyTypeObject* basei = NULL; PyTypeObject* tp_base = __Pyx_PyType_GetSlot(type, tp_base, PyTypeObject*); tp_base_name = __Pyx_PyType_GetFullyQualifiedName(tp_base); #if CYTHON_AVOID_BORROWED_REFS basei = (PyTypeObject*)PySequence_GetItem(bases, i); if (unlikely(!basei)) goto really_bad; #elif !CYTHON_ASSUME_SAFE_MACROS basei = (PyTypeObject*)PyTuple_GetItem(bases, i); if (unlikely(!basei)) goto really_bad; #else basei = (PyTypeObject*)PyTuple_GET_ITEM(bases, i); #endif base_name = __Pyx_PyType_GetFullyQualifiedName(basei); #if CYTHON_AVOID_BORROWED_REFS Py_DECREF(basei); #endif } PyErr_Format(PyExc_TypeError, "multiple bases have vtable conflict: '" __Pyx_FMT_TYPENAME "' and '" __Pyx_FMT_TYPENAME "'", tp_base_name, base_name); #if CYTHON_AVOID_BORROWED_REFS || !CYTHON_ASSUME_SAFE_MACROS really_bad: // bad has failed! #endif __Pyx_DECREF_TypeName(tp_base_name); __Pyx_DECREF_TypeName(base_name); #if CYTHON_COMPILING_IN_LIMITED_API || CYTHON_AVOID_BORROWED_REFS || !CYTHON_ASSUME_SAFE_MACROS other_failure: #endif PyMem_Free(base_vtables); return -1; } /* DelItemOnTypeDict (used by SetupReduce) */ static int __Pyx__DelItemOnTypeDict(PyTypeObject *tp, PyObject *k) { int result; PyObject *tp_dict; #if CYTHON_COMPILING_IN_LIMITED_API tp_dict = __Pyx_GetTypeDict(tp); if (unlikely(!tp_dict)) return -1; #else tp_dict = tp->tp_dict; #endif result = PyDict_DelItem(tp_dict, k); if (likely(!result)) PyType_Modified(tp); return result; } /* SetupReduce */ static int __Pyx_setup_reduce_is_named(PyObject* meth, PyObject* name) { int ret; PyObject *name_attr; name_attr = __Pyx_PyObject_GetAttrStrNoError(meth, __pyx_mstate_global->__pyx_n_u_name); if (likely(name_attr)) { ret = PyObject_RichCompareBool(name_attr, name, Py_EQ); } else { ret = -1; } if (unlikely(ret < 0)) { PyErr_Clear(); ret = 0; } Py_XDECREF(name_attr); return ret; } static int __Pyx_setup_reduce(PyObject* type_obj) { int ret = 0; PyObject *object_reduce = NULL; PyObject *object_getstate = NULL; PyObject *object_reduce_ex = NULL; PyObject *reduce = NULL; PyObject *reduce_ex = NULL; PyObject *reduce_cython = NULL; PyObject *setstate = NULL; PyObject *setstate_cython = NULL; PyObject *getstate = NULL; #if CYTHON_USE_PYTYPE_LOOKUP getstate = _PyType_Lookup((PyTypeObject*)type_obj, __pyx_mstate_global->__pyx_n_u_getstate); #else getstate = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_mstate_global->__pyx_n_u_getstate); if (!getstate && PyErr_Occurred()) { goto __PYX_BAD; } #endif if (getstate) { #if CYTHON_USE_PYTYPE_LOOKUP object_getstate = _PyType_Lookup(&PyBaseObject_Type, __pyx_mstate_global->__pyx_n_u_getstate); #else object_getstate = __Pyx_PyObject_GetAttrStrNoError((PyObject*)&PyBaseObject_Type, __pyx_mstate_global->__pyx_n_u_getstate); if (!object_getstate && PyErr_Occurred()) { goto __PYX_BAD; } #endif if (object_getstate != getstate) { goto __PYX_GOOD; } } #if CYTHON_USE_PYTYPE_LOOKUP object_reduce_ex = _PyType_Lookup(&PyBaseObject_Type, __pyx_mstate_global->__pyx_n_u_reduce_ex); if (!object_reduce_ex) goto __PYX_BAD; #else object_reduce_ex = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_mstate_global->__pyx_n_u_reduce_ex); if (!object_reduce_ex) goto __PYX_BAD; #endif reduce_ex = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_mstate_global->__pyx_n_u_reduce_ex); if (unlikely(!reduce_ex)) goto __PYX_BAD; if (reduce_ex == object_reduce_ex) { #if CYTHON_USE_PYTYPE_LOOKUP object_reduce = _PyType_Lookup(&PyBaseObject_Type, __pyx_mstate_global->__pyx_n_u_reduce); if (!object_reduce) goto __PYX_BAD; #else object_reduce = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_mstate_global->__pyx_n_u_reduce); if (!object_reduce) goto __PYX_BAD; #endif reduce = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_mstate_global->__pyx_n_u_reduce); if (unlikely(!reduce)) goto __PYX_BAD; if (reduce == object_reduce || __Pyx_setup_reduce_is_named(reduce, __pyx_mstate_global->__pyx_n_u_reduce_cython)) { reduce_cython = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_mstate_global->__pyx_n_u_reduce_cython); if (likely(reduce_cython)) { ret = __Pyx_SetItemOnTypeDict((PyTypeObject*)type_obj, __pyx_mstate_global->__pyx_n_u_reduce, reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD; ret = __Pyx_DelItemOnTypeDict((PyTypeObject*)type_obj, __pyx_mstate_global->__pyx_n_u_reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD; } else if (reduce == object_reduce || PyErr_Occurred()) { goto __PYX_BAD; } setstate = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_mstate_global->__pyx_n_u_setstate); if (!setstate) PyErr_Clear(); if (!setstate || __Pyx_setup_reduce_is_named(setstate, __pyx_mstate_global->__pyx_n_u_setstate_cython)) { setstate_cython = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_mstate_global->__pyx_n_u_setstate_cython); if (likely(setstate_cython)) { ret = __Pyx_SetItemOnTypeDict((PyTypeObject*)type_obj, __pyx_mstate_global->__pyx_n_u_setstate, setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD; ret = __Pyx_DelItemOnTypeDict((PyTypeObject*)type_obj, __pyx_mstate_global->__pyx_n_u_setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD; } else if (!setstate || PyErr_Occurred()) { goto __PYX_BAD; } } PyType_Modified((PyTypeObject*)type_obj); } } goto __PYX_GOOD; __PYX_BAD: if (!PyErr_Occurred()) { __Pyx_TypeName type_obj_name = __Pyx_PyType_GetFullyQualifiedName((PyTypeObject*)type_obj); PyErr_Format(PyExc_RuntimeError, "Unable to initialize pickling for " __Pyx_FMT_TYPENAME, type_obj_name); __Pyx_DECREF_TypeName(type_obj_name); } ret = -1; __PYX_GOOD: #if !CYTHON_USE_PYTYPE_LOOKUP Py_XDECREF(object_reduce); Py_XDECREF(object_reduce_ex); Py_XDECREF(object_getstate); Py_XDECREF(getstate); #endif Py_XDECREF(reduce); Py_XDECREF(reduce_ex); Py_XDECREF(reduce_cython); Py_XDECREF(setstate); Py_XDECREF(setstate_cython); return ret; } /* TypeImport */ #ifndef __PYX_HAVE_RT_ImportType_3_2_4 #define __PYX_HAVE_RT_ImportType_3_2_4 static PyTypeObject *__Pyx_ImportType_3_2_4(PyObject *module, const char *module_name, const char *class_name, size_t size, size_t alignment, enum __Pyx_ImportType_CheckSize_3_2_4 check_size) { PyObject *result = 0; Py_ssize_t basicsize; Py_ssize_t itemsize; #if defined(Py_LIMITED_API) || (defined(CYTHON_COMPILING_IN_LIMITED_API) && CYTHON_COMPILING_IN_LIMITED_API) PyObject *py_basicsize; PyObject *py_itemsize; #endif result = PyObject_GetAttrString(module, class_name); if (!result) goto bad; if (!PyType_Check(result)) { PyErr_Format(PyExc_TypeError, "%.200s.%.200s is not a type object", module_name, class_name); goto bad; } #if !( defined(Py_LIMITED_API) || (defined(CYTHON_COMPILING_IN_LIMITED_API) && CYTHON_COMPILING_IN_LIMITED_API) ) basicsize = ((PyTypeObject *)result)->tp_basicsize; itemsize = ((PyTypeObject *)result)->tp_itemsize; #else if (size == 0) { return (PyTypeObject *)result; } py_basicsize = PyObject_GetAttrString(result, "__basicsize__"); if (!py_basicsize) goto bad; basicsize = PyLong_AsSsize_t(py_basicsize); Py_DECREF(py_basicsize); py_basicsize = 0; if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred()) goto bad; py_itemsize = PyObject_GetAttrString(result, "__itemsize__"); if (!py_itemsize) goto bad; itemsize = PyLong_AsSsize_t(py_itemsize); Py_DECREF(py_itemsize); py_itemsize = 0; if (itemsize == (Py_ssize_t)-1 && PyErr_Occurred()) goto bad; #endif if (itemsize) { if (size % alignment) { alignment = size % alignment; } if (itemsize < (Py_ssize_t)alignment) itemsize = (Py_ssize_t)alignment; } if ((size_t)(basicsize + itemsize) < size) { PyErr_Format(PyExc_ValueError, "%.200s.%.200s size changed, may indicate binary incompatibility. " "Expected %zd from C header, got %zd from PyObject", module_name, class_name, size, basicsize+itemsize); goto bad; } if (check_size == __Pyx_ImportType_CheckSize_Error_3_2_4 && ((size_t)basicsize > size || (size_t)(basicsize + itemsize) < size)) { PyErr_Format(PyExc_ValueError, "%.200s.%.200s size changed, may indicate binary incompatibility. " "Expected %zd from C header, got %zd-%zd from PyObject", module_name, class_name, size, basicsize, basicsize+itemsize); goto bad; } else if (check_size == __Pyx_ImportType_CheckSize_Warn_3_2_4 && (size_t)basicsize > size) { if (PyErr_WarnFormat(NULL, 0, "%.200s.%.200s size changed, may indicate binary incompatibility. " "Expected %zd from C header, got %zd from PyObject", module_name, class_name, size, basicsize) < 0) { goto bad; } } return (PyTypeObject *)result; bad: Py_XDECREF(result); return NULL; } #endif /* ClassMethod */ static PyObject* __Pyx_Method_ClassMethod(PyObject *method) { #if CYTHON_COMPILING_IN_PYPY && PYPY_VERSION_NUM <= 0x05080000 if (PyObject_TypeCheck(method, &PyWrapperDescr_Type)) { return PyClassMethod_New(method); } #else #if CYTHON_COMPILING_IN_PYPY if (PyMethodDescr_Check(method)) #else if (__Pyx_TypeCheck(method, &PyMethodDescr_Type)) #endif { #if CYTHON_COMPILING_IN_LIMITED_API return PyErr_Format( PyExc_SystemError, "Cython cannot yet handle classmethod on a MethodDescriptorType (%S) in limited API mode. " "This is most likely a classmethod in a cdef class method with binding=False. " "Try setting 'binding' to True.", method); #elif CYTHON_COMPILING_IN_GRAAL && defined(GRAALPY_VERSION_NUM) && GRAALPY_VERSION_NUM > 0x19000000 PyTypeObject *d_type = GraalPyDescrObject_GetType(method); return PyDescr_NewClassMethod(d_type, GraalPyMethodDescrObject_GetMethod(method)); #elif CYTHON_COMPILING_IN_GRAAL PyTypeObject *d_type = PyDescrObject_GetType(method); return PyDescr_NewClassMethod(d_type, PyMethodDescrObject_GetMethod(method)); #else PyMethodDescrObject *descr = (PyMethodDescrObject *)method; PyTypeObject *d_type = descr->d_common.d_type; return PyDescr_NewClassMethod(d_type, descr->d_method); #endif } #endif #if !CYTHON_COMPILING_IN_LIMITED_API else if (PyMethod_Check(method)) { return PyClassMethod_New(PyMethod_GET_FUNCTION(method)); } else { return PyClassMethod_New(method); } #else { PyObject *func=NULL; PyObject *builtins, *classmethod, *classmethod_str, *result=NULL; if (__Pyx_TypeCheck(method, __pyx_mstate_global->__Pyx_CachedMethodType)) { func = PyObject_GetAttrString(method, "__func__"); if (!func) goto bad; } else { func = method; Py_INCREF(func); } builtins = PyEval_GetBuiltins(); // borrowed if (unlikely(!builtins)) goto bad; classmethod_str = PyUnicode_FromString("classmethod"); if (unlikely(!classmethod_str)) goto bad; classmethod = PyObject_GetItem(builtins, classmethod_str); Py_DECREF(classmethod_str); if (unlikely(!classmethod)) goto bad; result = PyObject_CallFunctionObjArgs(classmethod, func, NULL); Py_DECREF(classmethod); bad: Py_XDECREF(func); return result; } #endif } /* GetNameInClass */ static PyObject *__Pyx__GetNameInClass(PyObject *nmspace, PyObject *name) { PyObject *result; PyObject *dict; assert(PyType_Check(nmspace)); #if CYTHON_USE_TYPE_SLOTS dict = ((PyTypeObject*)nmspace)->tp_dict; Py_XINCREF(dict); #else dict = PyObject_GetAttr(nmspace, __pyx_mstate_global->__pyx_n_u_dict); #endif if (likely(dict)) { result = PyObject_GetItem(dict, name); Py_DECREF(dict); if (result) { return result; } } PyErr_Clear(); __Pyx_GetModuleGlobalNameUncached(result, name); return result; } /* ListPack */ static PyObject *__Pyx_PyList_Pack(Py_ssize_t n, ...) { va_list va; PyObject *l = PyList_New(n); va_start(va, n); if (unlikely(!l)) goto end; for (Py_ssize_t i=0; i__pyx_cython_runtime)) { return c_line; } __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback); cython_runtime_dict = __Pyx_PyProbablyModule_GetDict(__pyx_mstate_global->__pyx_cython_runtime); if (likely(cython_runtime_dict)) { __PYX_PY_DICT_LOOKUP_IF_MODIFIED( use_cline, cython_runtime_dict, __Pyx_PyDict_SetDefault(cython_runtime_dict, __pyx_mstate_global->__pyx_n_u_cline_in_traceback, Py_False)) } if (use_cline == NULL || use_cline == Py_False || (use_cline != Py_True && PyObject_Not(use_cline) != 0)) { c_line = 0; } Py_XDECREF(use_cline); Py_XDECREF(cython_runtime_dict); __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback); return c_line; } #endif /* CodeObjectCache (used by AddTraceback) */ static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { int start = 0, mid = 0, end = count - 1; if (end >= 0 && code_line > entries[end].code_line) { return count; } while (start < end) { mid = start + (end - start) / 2; if (code_line < entries[mid].code_line) { end = mid; } else if (code_line > entries[mid].code_line) { start = mid + 1; } else { return mid; } } if (code_line <= entries[mid].code_line) { return mid; } else { return mid + 1; } } static __Pyx_CachedCodeObjectType *__pyx__find_code_object(struct __Pyx_CodeObjectCache *code_cache, int code_line) { __Pyx_CachedCodeObjectType* code_object; int pos; if (unlikely(!code_line) || unlikely(!code_cache->entries)) { return NULL; } pos = __pyx_bisect_code_objects(code_cache->entries, code_cache->count, code_line); if (unlikely(pos >= code_cache->count) || unlikely(code_cache->entries[pos].code_line != code_line)) { return NULL; } code_object = code_cache->entries[pos].code_object; Py_INCREF(code_object); return code_object; } static __Pyx_CachedCodeObjectType *__pyx_find_code_object(int code_line) { #if CYTHON_COMPILING_IN_CPYTHON_FREETHREADING && !CYTHON_ATOMICS (void)__pyx__find_code_object; return NULL; // Most implementation should have atomics. But otherwise, don't make it thread-safe, just miss. #else struct __Pyx_CodeObjectCache *code_cache = &__pyx_mstate_global->__pyx_code_cache; #if CYTHON_COMPILING_IN_CPYTHON_FREETHREADING __pyx_nonatomic_int_type old_count = __pyx_atomic_incr_acq_rel(&code_cache->accessor_count); if (old_count < 0) { __pyx_atomic_decr_acq_rel(&code_cache->accessor_count); return NULL; } #endif __Pyx_CachedCodeObjectType *result = __pyx__find_code_object(code_cache, code_line); #if CYTHON_COMPILING_IN_CPYTHON_FREETHREADING __pyx_atomic_decr_acq_rel(&code_cache->accessor_count); #endif return result; #endif } static void __pyx__insert_code_object(struct __Pyx_CodeObjectCache *code_cache, int code_line, __Pyx_CachedCodeObjectType* code_object) { int pos, i; __Pyx_CodeObjectCacheEntry* entries = code_cache->entries; if (unlikely(!code_line)) { return; } if (unlikely(!entries)) { entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry)); if (likely(entries)) { code_cache->entries = entries; code_cache->max_count = 64; code_cache->count = 1; entries[0].code_line = code_line; entries[0].code_object = code_object; Py_INCREF(code_object); } return; } pos = __pyx_bisect_code_objects(code_cache->entries, code_cache->count, code_line); if ((pos < code_cache->count) && unlikely(code_cache->entries[pos].code_line == code_line)) { __Pyx_CachedCodeObjectType* tmp = entries[pos].code_object; entries[pos].code_object = code_object; Py_INCREF(code_object); Py_DECREF(tmp); return; } if (code_cache->count == code_cache->max_count) { int new_max = code_cache->max_count + 64; entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc( code_cache->entries, ((size_t)new_max) * sizeof(__Pyx_CodeObjectCacheEntry)); if (unlikely(!entries)) { return; } code_cache->entries = entries; code_cache->max_count = new_max; } for (i=code_cache->count; i>pos; i--) { entries[i] = entries[i-1]; } entries[pos].code_line = code_line; entries[pos].code_object = code_object; code_cache->count++; Py_INCREF(code_object); } static void __pyx_insert_code_object(int code_line, __Pyx_CachedCodeObjectType* code_object) { #if CYTHON_COMPILING_IN_CPYTHON_FREETHREADING && !CYTHON_ATOMICS (void)__pyx__insert_code_object; return; // Most implementation should have atomics. But otherwise, don't make it thread-safe, just fail. #else struct __Pyx_CodeObjectCache *code_cache = &__pyx_mstate_global->__pyx_code_cache; #if CYTHON_COMPILING_IN_CPYTHON_FREETHREADING __pyx_nonatomic_int_type expected = 0; if (!__pyx_atomic_int_cmp_exchange(&code_cache->accessor_count, &expected, INT_MIN)) { return; } #endif __pyx__insert_code_object(code_cache, code_line, code_object); #if CYTHON_COMPILING_IN_CPYTHON_FREETHREADING __pyx_atomic_sub(&code_cache->accessor_count, INT_MIN); #endif #endif } /* AddTraceback */ #include "compile.h" #include "frameobject.h" #include "traceback.h" #if PY_VERSION_HEX >= 0x030b00a6 && !CYTHON_COMPILING_IN_LIMITED_API && !defined(PYPY_VERSION) #ifndef Py_BUILD_CORE #define Py_BUILD_CORE 1 #endif #include "internal/pycore_frame.h" #endif #if CYTHON_COMPILING_IN_LIMITED_API static PyObject *__Pyx_PyCode_Replace_For_AddTraceback(PyObject *code, PyObject *scratch_dict, PyObject *firstlineno, PyObject *name) { PyObject *replace = NULL; if (unlikely(PyDict_SetItemString(scratch_dict, "co_firstlineno", firstlineno))) return NULL; if (unlikely(PyDict_SetItemString(scratch_dict, "co_name", name))) return NULL; replace = PyObject_GetAttrString(code, "replace"); if (likely(replace)) { PyObject *result = PyObject_Call(replace, __pyx_mstate_global->__pyx_empty_tuple, scratch_dict); Py_DECREF(replace); return result; } PyErr_Clear(); return NULL; } static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename) { PyObject *code_object = NULL, *py_py_line = NULL, *py_funcname = NULL, *dict = NULL; PyObject *replace = NULL, *getframe = NULL, *frame = NULL; PyObject *exc_type, *exc_value, *exc_traceback; int success = 0; if (c_line) { c_line = __Pyx_CLineForTraceback(__Pyx_PyThreadState_Current, c_line); } PyErr_Fetch(&exc_type, &exc_value, &exc_traceback); code_object = __pyx_find_code_object(c_line ? -c_line : py_line); if (!code_object) { code_object = Py_CompileString("_getframe()", filename, Py_eval_input); if (unlikely(!code_object)) goto bad; py_py_line = PyLong_FromLong(py_line); if (unlikely(!py_py_line)) goto bad; if (c_line) { py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); } else { py_funcname = PyUnicode_FromString(funcname); } if (unlikely(!py_funcname)) goto bad; dict = PyDict_New(); if (unlikely(!dict)) goto bad; { PyObject *old_code_object = code_object; code_object = __Pyx_PyCode_Replace_For_AddTraceback(code_object, dict, py_py_line, py_funcname); Py_DECREF(old_code_object); } if (unlikely(!code_object)) goto bad; __pyx_insert_code_object(c_line ? -c_line : py_line, code_object); } else { dict = PyDict_New(); } getframe = PySys_GetObject("_getframe"); if (unlikely(!getframe)) goto bad; if (unlikely(PyDict_SetItemString(dict, "_getframe", getframe))) goto bad; frame = PyEval_EvalCode(code_object, dict, dict); if (unlikely(!frame) || frame == Py_None) goto bad; success = 1; bad: PyErr_Restore(exc_type, exc_value, exc_traceback); Py_XDECREF(code_object); Py_XDECREF(py_py_line); Py_XDECREF(py_funcname); Py_XDECREF(dict); Py_XDECREF(replace); if (success) { PyTraceBack_Here( (struct _frame*)frame); } Py_XDECREF(frame); } #else static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = NULL; PyObject *py_funcname = NULL; if (c_line) { py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); if (!py_funcname) goto bad; funcname = PyUnicode_AsUTF8(py_funcname); if (!funcname) goto bad; } py_code = PyCode_NewEmpty(filename, funcname, py_line); Py_XDECREF(py_funcname); return py_code; bad: Py_XDECREF(py_funcname); return NULL; } static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = 0; PyFrameObject *py_frame = 0; PyThreadState *tstate = __Pyx_PyThreadState_Current; PyObject *ptype, *pvalue, *ptraceback; if (c_line) { c_line = __Pyx_CLineForTraceback(tstate, c_line); } py_code = __pyx_find_code_object(c_line ? -c_line : py_line); if (!py_code) { __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback); py_code = __Pyx_CreateCodeObjectForTraceback( funcname, c_line, py_line, filename); if (!py_code) { /* If the code object creation fails, then we should clear the fetched exception references and propagate the new exception */ Py_XDECREF(ptype); Py_XDECREF(pvalue); Py_XDECREF(ptraceback); goto bad; } __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback); __pyx_insert_code_object(c_line ? -c_line : py_line, py_code); } py_frame = PyFrame_New( tstate, /*PyThreadState *tstate,*/ py_code, /*PyCodeObject *code,*/ __pyx_mstate_global->__pyx_d, /*PyObject *globals,*/ 0 /*PyObject *locals*/ ); if (!py_frame) goto bad; __Pyx_PyFrame_SetLineNumber(py_frame, py_line); PyTraceBack_Here(py_frame); bad: Py_XDECREF(py_code); Py_XDECREF(py_frame); } #endif /* CIntFromPyVerify */ #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0) #define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1) #define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\ {\ func_type value = func_value;\ if (sizeof(target_type) < sizeof(func_type)) {\ if (unlikely(value != (func_type) (target_type) value)) {\ func_type zero = 0;\ if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\ return (target_type) -1;\ if (is_unsigned && unlikely(value < zero))\ goto raise_neg_overflow;\ else\ goto raise_overflow;\ }\ }\ return (target_type) value;\ } /* CheckUnpickleChecksum */ static void __Pyx_RaiseUnpickleChecksumError(long checksum, long checksum1, long checksum2, long checksum3, const char *members) { PyObject *pickle_module = PyImport_ImportModule("pickle"); if (unlikely(!pickle_module)) return; PyObject *pickle_error = PyObject_GetAttrString(pickle_module, "PickleError"); Py_DECREF(pickle_module); if (unlikely(!pickle_error)) return; if (checksum2 == checksum1) { PyErr_Format(pickle_error, "Incompatible checksums (0x%x vs (0x%x) = (%s))", checksum, checksum1, members); } else if (checksum3 == checksum2) { PyErr_Format(pickle_error, "Incompatible checksums (0x%x vs (0x%x, 0x%x) = (%s))", checksum, checksum1, checksum2, members); } else { PyErr_Format(pickle_error, "Incompatible checksums (0x%x vs (0x%x, 0x%x, 0x%x) = (%s))", checksum, checksum1, checksum2, checksum3, members); } Py_DECREF(pickle_error); } static int __Pyx_CheckUnpickleChecksum(long checksum, long checksum1, long checksum2, long checksum3, const char *members) { int found = 0; found |= checksum1 == checksum; found |= checksum2 == checksum; found |= checksum3 == checksum; if (likely(found)) return 0; __Pyx_RaiseUnpickleChecksumError(checksum, checksum1, checksum2, checksum3, members); return -1; } /* Declarations */ #if CYTHON_CCOMPLEX && (1) && (!0 || __cplusplus) #ifdef __cplusplus static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return ::std::complex< float >(x, y); } #else static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return x + y*(__pyx_t_float_complex)_Complex_I; } #endif #else static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { __pyx_t_float_complex z; z.real = x; z.imag = y; return z; } #endif /* Arithmetic */ #if CYTHON_CCOMPLEX && (1) && (!0 || __cplusplus) #else static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { return (a.real == b.real) && (a.imag == b.imag); } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; z.real = a.real + b.real; z.imag = a.imag + b.imag; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; z.real = a.real - b.real; z.imag = a.imag - b.imag; return z; } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; z.real = a.real * b.real - a.imag * b.imag; z.imag = a.real * b.imag + a.imag * b.real; return z; } #if 1 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { if (b.imag == 0) { return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real); } else if (fabsf(b.real) >= fabsf(b.imag)) { if (b.real == 0 && b.imag == 0) { return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.imag); } else { float r = b.imag / b.real; float s = (float)(1.0) / (b.real + b.imag * r); return __pyx_t_float_complex_from_parts( (a.real + a.imag * r) * s, (a.imag - a.real * r) * s); } } else { float r = b.real / b.imag; float s = (float)(1.0) / (b.imag + b.real * r); return __pyx_t_float_complex_from_parts( (a.real * r + a.imag) * s, (a.imag * r - a.real) * s); } } #else static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { if (b.imag == 0) { return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real); } else { float denom = b.real * b.real + b.imag * b.imag; return __pyx_t_float_complex_from_parts( (a.real * b.real + a.imag * b.imag) / denom, (a.imag * b.real - a.real * b.imag) / denom); } } #endif static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex a) { __pyx_t_float_complex z; z.real = -a.real; z.imag = -a.imag; return z; } static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex a) { return (a.real == 0) && (a.imag == 0); } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex a) { __pyx_t_float_complex z; z.real = a.real; z.imag = -a.imag; return z; } #if 1 static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex z) { #if !defined(HAVE_HYPOT) || defined(_MSC_VER) return sqrtf(z.real*z.real + z.imag*z.imag); #else return hypotf(z.real, z.imag); #endif } static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { __pyx_t_float_complex z; float r, lnr, theta, z_r, z_theta; if (b.imag == 0 && b.real == (int)b.real) { if (b.real < 0) { float denom = a.real * a.real + a.imag * a.imag; a.real = a.real / denom; a.imag = -a.imag / denom; b.real = -b.real; } switch ((int)b.real) { case 0: z.real = 1; z.imag = 0; return z; case 1: return a; case 2: return __Pyx_c_prod_float(a, a); case 3: z = __Pyx_c_prod_float(a, a); return __Pyx_c_prod_float(z, a); case 4: z = __Pyx_c_prod_float(a, a); return __Pyx_c_prod_float(z, z); } } if (a.imag == 0) { if (a.real == 0) { return a; } else if ((b.imag == 0) && (a.real >= 0)) { z.real = powf(a.real, b.real); z.imag = 0; return z; } else if (a.real > 0) { r = a.real; theta = 0; } else { r = -a.real; theta = atan2f(0.0, -1.0); } } else { r = __Pyx_c_abs_float(a); theta = atan2f(a.imag, a.real); } lnr = logf(r); z_r = expf(lnr * b.real - theta * b.imag); z_theta = theta * b.real + lnr * b.imag; z.real = z_r * cosf(z_theta); z.imag = z_r * sinf(z_theta); return z; } #endif #endif /* Declarations */ #if CYTHON_CCOMPLEX && (1) && (!0 || __cplusplus) #ifdef __cplusplus static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return ::std::complex< double >(x, y); } #else static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return x + y*(__pyx_t_double_complex)_Complex_I; } #endif #else static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { __pyx_t_double_complex z; z.real = x; z.imag = y; return z; } #endif /* Arithmetic */ #if CYTHON_CCOMPLEX && (1) && (!0 || __cplusplus) #else static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { return (a.real == b.real) && (a.imag == b.imag); } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; z.real = a.real + b.real; z.imag = a.imag + b.imag; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; z.real = a.real - b.real; z.imag = a.imag - b.imag; return z; } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; z.real = a.real * b.real - a.imag * b.imag; z.imag = a.real * b.imag + a.imag * b.real; return z; } #if 1 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { if (b.imag == 0) { return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real); } else if (fabs(b.real) >= fabs(b.imag)) { if (b.real == 0 && b.imag == 0) { return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.imag); } else { double r = b.imag / b.real; double s = (double)(1.0) / (b.real + b.imag * r); return __pyx_t_double_complex_from_parts( (a.real + a.imag * r) * s, (a.imag - a.real * r) * s); } } else { double r = b.real / b.imag; double s = (double)(1.0) / (b.imag + b.real * r); return __pyx_t_double_complex_from_parts( (a.real * r + a.imag) * s, (a.imag * r - a.real) * s); } } #else static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { if (b.imag == 0) { return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real); } else { double denom = b.real * b.real + b.imag * b.imag; return __pyx_t_double_complex_from_parts( (a.real * b.real + a.imag * b.imag) / denom, (a.imag * b.real - a.real * b.imag) / denom); } } #endif static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex a) { __pyx_t_double_complex z; z.real = -a.real; z.imag = -a.imag; return z; } static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex a) { return (a.real == 0) && (a.imag == 0); } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex a) { __pyx_t_double_complex z; z.real = a.real; z.imag = -a.imag; return z; } #if 1 static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex z) { #if !defined(HAVE_HYPOT) || defined(_MSC_VER) return sqrt(z.real*z.real + z.imag*z.imag); #else return hypot(z.real, z.imag); #endif } static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { __pyx_t_double_complex z; double r, lnr, theta, z_r, z_theta; if (b.imag == 0 && b.real == (int)b.real) { if (b.real < 0) { double denom = a.real * a.real + a.imag * a.imag; a.real = a.real / denom; a.imag = -a.imag / denom; b.real = -b.real; } switch ((int)b.real) { case 0: z.real = 1; z.imag = 0; return z; case 1: return a; case 2: return __Pyx_c_prod_double(a, a); case 3: z = __Pyx_c_prod_double(a, a); return __Pyx_c_prod_double(z, a); case 4: z = __Pyx_c_prod_double(a, a); return __Pyx_c_prod_double(z, z); } } if (a.imag == 0) { if (a.real == 0) { return a; } else if ((b.imag == 0) && (a.real >= 0)) { z.real = pow(a.real, b.real); z.imag = 0; return z; } else if (a.real > 0) { r = a.real; theta = 0; } else { r = -a.real; theta = atan2(0.0, -1.0); } } else { r = __Pyx_c_abs_double(a); theta = atan2(a.imag, a.real); } lnr = log(r); z_r = exp(lnr * b.real - theta * b.imag); z_theta = theta * b.real + lnr * b.imag; z.real = z_r * cos(z_theta); z.imag = z_r * sin(z_theta); return z; } #endif #endif /* Declarations */ #if CYTHON_CCOMPLEX && (1) && (!0 || __cplusplus) #ifdef __cplusplus static CYTHON_INLINE __pyx_t_long_double_complex __pyx_t_long_double_complex_from_parts(long double x, long double y) { return ::std::complex< long double >(x, y); } #else static CYTHON_INLINE __pyx_t_long_double_complex __pyx_t_long_double_complex_from_parts(long double x, long double y) { return x + y*(__pyx_t_long_double_complex)_Complex_I; } #endif #else static CYTHON_INLINE __pyx_t_long_double_complex __pyx_t_long_double_complex_from_parts(long double x, long double y) { __pyx_t_long_double_complex z; z.real = x; z.imag = y; return z; } #endif /* Arithmetic */ #if CYTHON_CCOMPLEX && (1) && (!0 || __cplusplus) #else static CYTHON_INLINE int __Pyx_c_eq_long__double(__pyx_t_long_double_complex a, __pyx_t_long_double_complex b) { return (a.real == b.real) && (a.imag == b.imag); } static CYTHON_INLINE __pyx_t_long_double_complex __Pyx_c_sum_long__double(__pyx_t_long_double_complex a, __pyx_t_long_double_complex b) { __pyx_t_long_double_complex z; z.real = a.real + b.real; z.imag = a.imag + b.imag; return z; } static CYTHON_INLINE __pyx_t_long_double_complex __Pyx_c_diff_long__double(__pyx_t_long_double_complex a, __pyx_t_long_double_complex b) { __pyx_t_long_double_complex z; z.real = a.real - b.real; z.imag = a.imag - b.imag; return z; } static CYTHON_INLINE __pyx_t_long_double_complex __Pyx_c_prod_long__double(__pyx_t_long_double_complex a, __pyx_t_long_double_complex b) { __pyx_t_long_double_complex z; z.real = a.real * b.real - a.imag * b.imag; z.imag = a.real * b.imag + a.imag * b.real; return z; } #if 1 static CYTHON_INLINE __pyx_t_long_double_complex __Pyx_c_quot_long__double(__pyx_t_long_double_complex a, __pyx_t_long_double_complex b) { if (b.imag == 0) { return __pyx_t_long_double_complex_from_parts(a.real / b.real, a.imag / b.real); } else if (fabsl(b.real) >= fabsl(b.imag)) { if (b.real == 0 && b.imag == 0) { return __pyx_t_long_double_complex_from_parts(a.real / b.real, a.imag / b.imag); } else { long double r = b.imag / b.real; long double s = (long double)(1.0) / (b.real + b.imag * r); return __pyx_t_long_double_complex_from_parts( (a.real + a.imag * r) * s, (a.imag - a.real * r) * s); } } else { long double r = b.real / b.imag; long double s = (long double)(1.0) / (b.imag + b.real * r); return __pyx_t_long_double_complex_from_parts( (a.real * r + a.imag) * s, (a.imag * r - a.real) * s); } } #else static CYTHON_INLINE __pyx_t_long_double_complex __Pyx_c_quot_long__double(__pyx_t_long_double_complex a, __pyx_t_long_double_complex b) { if (b.imag == 0) { return __pyx_t_long_double_complex_from_parts(a.real / b.real, a.imag / b.real); } else { long double denom = b.real * b.real + b.imag * b.imag; return __pyx_t_long_double_complex_from_parts( (a.real * b.real + a.imag * b.imag) / denom, (a.imag * b.real - a.real * b.imag) / denom); } } #endif static CYTHON_INLINE __pyx_t_long_double_complex __Pyx_c_neg_long__double(__pyx_t_long_double_complex a) { __pyx_t_long_double_complex z; z.real = -a.real; z.imag = -a.imag; return z; } static CYTHON_INLINE int __Pyx_c_is_zero_long__double(__pyx_t_long_double_complex a) { return (a.real == 0) && (a.imag == 0); } static CYTHON_INLINE __pyx_t_long_double_complex __Pyx_c_conj_long__double(__pyx_t_long_double_complex a) { __pyx_t_long_double_complex z; z.real = a.real; z.imag = -a.imag; return z; } #if 1 static CYTHON_INLINE long double __Pyx_c_abs_long__double(__pyx_t_long_double_complex z) { #if !defined(HAVE_HYPOT) || defined(_MSC_VER) return sqrtl(z.real*z.real + z.imag*z.imag); #else return hypotl(z.real, z.imag); #endif } static CYTHON_INLINE __pyx_t_long_double_complex __Pyx_c_pow_long__double(__pyx_t_long_double_complex a, __pyx_t_long_double_complex b) { __pyx_t_long_double_complex z; long double r, lnr, theta, z_r, z_theta; if (b.imag == 0 && b.real == (int)b.real) { if (b.real < 0) { long double denom = a.real * a.real + a.imag * a.imag; a.real = a.real / denom; a.imag = -a.imag / denom; b.real = -b.real; } switch ((int)b.real) { case 0: z.real = 1; z.imag = 0; return z; case 1: return a; case 2: return __Pyx_c_prod_long__double(a, a); case 3: z = __Pyx_c_prod_long__double(a, a); return __Pyx_c_prod_long__double(z, a); case 4: z = __Pyx_c_prod_long__double(a, a); return __Pyx_c_prod_long__double(z, z); } } if (a.imag == 0) { if (a.real == 0) { return a; } else if ((b.imag == 0) && (a.real >= 0)) { z.real = powl(a.real, b.real); z.imag = 0; return z; } else if (a.real > 0) { r = a.real; theta = 0; } else { r = -a.real; theta = atan2l(0.0, -1.0); } } else { r = __Pyx_c_abs_long__double(a); theta = atan2l(a.imag, a.real); } lnr = logl(r); z_r = expl(lnr * b.real - theta * b.imag); z_theta = theta * b.real + lnr * b.imag; z.real = z_r * cosl(z_theta); z.imag = z_r * sinl(z_theta); return z; } #endif #endif /* CIntToPy */ static CYTHON_INLINE PyObject* __Pyx_PyLong_From_int(int value) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const int neg_one = (int) -1, const_zero = (int) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(int) < sizeof(long)) { return PyLong_FromLong((long) value); } else if (sizeof(int) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); #if !CYTHON_COMPILING_IN_PYPY } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) { return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); #endif } } else { if (sizeof(int) <= sizeof(long)) { return PyLong_FromLong((long) value); } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) { return PyLong_FromLongLong((PY_LONG_LONG) value); } } { unsigned char *bytes = (unsigned char *)&value; #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 if (is_unsigned) { return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); } else { return PyLong_FromNativeBytes(bytes, sizeof(value), -1); } #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 int one = 1; int little = (int)*(unsigned char *)&one; return _PyLong_FromByteArray(bytes, sizeof(int), little, !is_unsigned); #else int one = 1; int little = (int)*(unsigned char *)&one; PyObject *from_bytes, *result = NULL, *kwds = NULL; PyObject *py_bytes = NULL, *order_str = NULL; from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); if (!from_bytes) return NULL; py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(int)); if (!py_bytes) goto limited_bad; order_str = PyUnicode_FromString(little ? "little" : "big"); if (!order_str) goto limited_bad; { PyObject *args[3+(CYTHON_VECTORCALL ? 1 : 0)] = { NULL, py_bytes, order_str }; if (!is_unsigned) { kwds = __Pyx_MakeVectorcallBuilderKwds(1); if (!kwds) goto limited_bad; if (__Pyx_VectorcallBuilder_AddArgStr("signed", __Pyx_NewRef(Py_True), kwds, args+3, 0) < 0) goto limited_bad; } result = __Pyx_Object_Vectorcall_CallFromBuilder(from_bytes, args+1, 2 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET, kwds); } limited_bad: Py_XDECREF(kwds); Py_XDECREF(order_str); Py_XDECREF(py_bytes); Py_XDECREF(from_bytes); return result; #endif } } /* CIntFromPy */ static CYTHON_INLINE int __Pyx_PyLong_As_int(PyObject *x) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const int neg_one = (int) -1, const_zero = (int) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; if (unlikely(!PyLong_Check(x))) { int val; PyObject *tmp = __Pyx_PyNumber_Long(x); if (!tmp) return (int) -1; val = __Pyx_PyLong_As_int(tmp); Py_DECREF(tmp); return val; } if (is_unsigned) { #if CYTHON_USE_PYLONG_INTERNALS if (unlikely(__Pyx_PyLong_IsNeg(x))) { goto raise_neg_overflow; } else if (__Pyx_PyLong_IsCompact(x)) { __PYX_VERIFY_RETURN_INT(int, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) } else { const digit* digits = __Pyx_PyLong_Digits(x); assert(__Pyx_PyLong_DigitCount(x) > 1); switch (__Pyx_PyLong_DigitCount(x)) { case 2: if ((8 * sizeof(int) > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int) >= 2 * PyLong_SHIFT)) { return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); } } break; case 3: if ((8 * sizeof(int) > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int) >= 3 * PyLong_SHIFT)) { return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); } } break; case 4: if ((8 * sizeof(int) > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int) >= 4 * PyLong_SHIFT)) { return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); } } break; } } #endif #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 if (unlikely(Py_SIZE(x) < 0)) { goto raise_neg_overflow; } #else { int result = PyObject_RichCompareBool(x, Py_False, Py_LT); if (unlikely(result < 0)) return (int) -1; if (unlikely(result == 1)) goto raise_neg_overflow; } #endif if ((sizeof(int) <= sizeof(unsigned long))) { __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x)) } else if ((sizeof(int) <= sizeof(unsigned PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) } } else { #if CYTHON_USE_PYLONG_INTERNALS if (__Pyx_PyLong_IsCompact(x)) { __PYX_VERIFY_RETURN_INT(int, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) } else { const digit* digits = __Pyx_PyLong_Digits(x); assert(__Pyx_PyLong_DigitCount(x) > 1); switch (__Pyx_PyLong_SignedDigitCount(x)) { case -2: if ((8 * sizeof(int) - 1 > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int) - 1 > 2 * PyLong_SHIFT)) { return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); } } break; case 2: if ((8 * sizeof(int) > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int) - 1 > 2 * PyLong_SHIFT)) { return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); } } break; case -3: if ((8 * sizeof(int) - 1 > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int) - 1 > 3 * PyLong_SHIFT)) { return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); } } break; case 3: if ((8 * sizeof(int) > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int) - 1 > 3 * PyLong_SHIFT)) { return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); } } break; case -4: if ((8 * sizeof(int) - 1 > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int) - 1 > 4 * PyLong_SHIFT)) { return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); } } break; case 4: if ((8 * sizeof(int) > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int) - 1 > 4 * PyLong_SHIFT)) { return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); } } break; } } #endif if ((sizeof(int) <= sizeof(long))) { __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x)) } else if ((sizeof(int) <= sizeof(PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x)) } } { int val; int ret = -1; #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API Py_ssize_t bytes_copied = PyLong_AsNativeBytes( x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0)); if (unlikely(bytes_copied == -1)) { } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) { goto raise_overflow; } else { ret = 0; } #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; ret = _PyLong_AsByteArray((PyLongObject *)x, bytes, sizeof(val), is_little, !is_unsigned); #else PyObject *v; PyObject *stepval = NULL, *mask = NULL, *shift = NULL; int bits, remaining_bits, is_negative = 0; int chunk_size = (sizeof(long) < 8) ? 30 : 62; if (likely(PyLong_CheckExact(x))) { v = __Pyx_NewRef(x); } else { v = PyNumber_Long(x); if (unlikely(!v)) return (int) -1; assert(PyLong_CheckExact(v)); } { int result = PyObject_RichCompareBool(v, Py_False, Py_LT); if (unlikely(result < 0)) { Py_DECREF(v); return (int) -1; } is_negative = result == 1; } if (is_unsigned && unlikely(is_negative)) { Py_DECREF(v); goto raise_neg_overflow; } else if (is_negative) { stepval = PyNumber_Invert(v); Py_DECREF(v); if (unlikely(!stepval)) return (int) -1; } else { stepval = v; } v = NULL; val = (int) 0; mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; for (bits = 0; bits < (int) sizeof(int) * 8 - chunk_size; bits += chunk_size) { PyObject *tmp, *digit; long idigit; digit = PyNumber_And(stepval, mask); if (unlikely(!digit)) goto done; idigit = PyLong_AsLong(digit); Py_DECREF(digit); if (unlikely(idigit < 0)) goto done; val |= ((int) idigit) << bits; tmp = PyNumber_Rshift(stepval, shift); if (unlikely(!tmp)) goto done; Py_DECREF(stepval); stepval = tmp; } Py_DECREF(shift); shift = NULL; Py_DECREF(mask); mask = NULL; { long idigit = PyLong_AsLong(stepval); if (unlikely(idigit < 0)) goto done; remaining_bits = ((int) sizeof(int) * 8) - bits - (is_unsigned ? 0 : 1); if (unlikely(idigit >= (1L << remaining_bits))) goto raise_overflow; val |= ((int) idigit) << bits; } if (!is_unsigned) { if (unlikely(val & (((int) 1) << (sizeof(int) * 8 - 1)))) goto raise_overflow; if (is_negative) val = ~val; } ret = 0; done: Py_XDECREF(shift); Py_XDECREF(mask); Py_XDECREF(stepval); #endif if (unlikely(ret)) return (int) -1; return val; } raise_overflow: PyErr_SetString(PyExc_OverflowError, "value too large to convert to int"); return (int) -1; raise_neg_overflow: PyErr_SetString(PyExc_OverflowError, "can't convert negative value to int"); return (int) -1; } /* CIntFromPy */ static CYTHON_INLINE long __Pyx_PyLong_As_long(PyObject *x) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const long neg_one = (long) -1, const_zero = (long) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; if (unlikely(!PyLong_Check(x))) { long val; PyObject *tmp = __Pyx_PyNumber_Long(x); if (!tmp) return (long) -1; val = __Pyx_PyLong_As_long(tmp); Py_DECREF(tmp); return val; } if (is_unsigned) { #if CYTHON_USE_PYLONG_INTERNALS if (unlikely(__Pyx_PyLong_IsNeg(x))) { goto raise_neg_overflow; } else if (__Pyx_PyLong_IsCompact(x)) { __PYX_VERIFY_RETURN_INT(long, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) } else { const digit* digits = __Pyx_PyLong_Digits(x); assert(__Pyx_PyLong_DigitCount(x) > 1); switch (__Pyx_PyLong_DigitCount(x)) { case 2: if ((8 * sizeof(long) > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(long) >= 2 * PyLong_SHIFT)) { return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); } } break; case 3: if ((8 * sizeof(long) > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(long) >= 3 * PyLong_SHIFT)) { return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); } } break; case 4: if ((8 * sizeof(long) > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(long) >= 4 * PyLong_SHIFT)) { return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); } } break; } } #endif #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 if (unlikely(Py_SIZE(x) < 0)) { goto raise_neg_overflow; } #else { int result = PyObject_RichCompareBool(x, Py_False, Py_LT); if (unlikely(result < 0)) return (long) -1; if (unlikely(result == 1)) goto raise_neg_overflow; } #endif if ((sizeof(long) <= sizeof(unsigned long))) { __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x)) } else if ((sizeof(long) <= sizeof(unsigned PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) } } else { #if CYTHON_USE_PYLONG_INTERNALS if (__Pyx_PyLong_IsCompact(x)) { __PYX_VERIFY_RETURN_INT(long, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) } else { const digit* digits = __Pyx_PyLong_Digits(x); assert(__Pyx_PyLong_DigitCount(x) > 1); switch (__Pyx_PyLong_SignedDigitCount(x)) { case -2: if ((8 * sizeof(long) - 1 > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(long) - 1 > 2 * PyLong_SHIFT)) { return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); } } break; case 2: if ((8 * sizeof(long) > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(long) - 1 > 2 * PyLong_SHIFT)) { return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); } } break; case -3: if ((8 * sizeof(long) - 1 > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(long) - 1 > 3 * PyLong_SHIFT)) { return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); } } break; case 3: if ((8 * sizeof(long) > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(long) - 1 > 3 * PyLong_SHIFT)) { return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); } } break; case -4: if ((8 * sizeof(long) - 1 > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(long) - 1 > 4 * PyLong_SHIFT)) { return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); } } break; case 4: if ((8 * sizeof(long) > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(long) - 1 > 4 * PyLong_SHIFT)) { return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); } } break; } } #endif if ((sizeof(long) <= sizeof(long))) { __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x)) } else if ((sizeof(long) <= sizeof(PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x)) } } { long val; int ret = -1; #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API Py_ssize_t bytes_copied = PyLong_AsNativeBytes( x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0)); if (unlikely(bytes_copied == -1)) { } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) { goto raise_overflow; } else { ret = 0; } #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; ret = _PyLong_AsByteArray((PyLongObject *)x, bytes, sizeof(val), is_little, !is_unsigned); #else PyObject *v; PyObject *stepval = NULL, *mask = NULL, *shift = NULL; int bits, remaining_bits, is_negative = 0; int chunk_size = (sizeof(long) < 8) ? 30 : 62; if (likely(PyLong_CheckExact(x))) { v = __Pyx_NewRef(x); } else { v = PyNumber_Long(x); if (unlikely(!v)) return (long) -1; assert(PyLong_CheckExact(v)); } { int result = PyObject_RichCompareBool(v, Py_False, Py_LT); if (unlikely(result < 0)) { Py_DECREF(v); return (long) -1; } is_negative = result == 1; } if (is_unsigned && unlikely(is_negative)) { Py_DECREF(v); goto raise_neg_overflow; } else if (is_negative) { stepval = PyNumber_Invert(v); Py_DECREF(v); if (unlikely(!stepval)) return (long) -1; } else { stepval = v; } v = NULL; val = (long) 0; mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; for (bits = 0; bits < (int) sizeof(long) * 8 - chunk_size; bits += chunk_size) { PyObject *tmp, *digit; long idigit; digit = PyNumber_And(stepval, mask); if (unlikely(!digit)) goto done; idigit = PyLong_AsLong(digit); Py_DECREF(digit); if (unlikely(idigit < 0)) goto done; val |= ((long) idigit) << bits; tmp = PyNumber_Rshift(stepval, shift); if (unlikely(!tmp)) goto done; Py_DECREF(stepval); stepval = tmp; } Py_DECREF(shift); shift = NULL; Py_DECREF(mask); mask = NULL; { long idigit = PyLong_AsLong(stepval); if (unlikely(idigit < 0)) goto done; remaining_bits = ((int) sizeof(long) * 8) - bits - (is_unsigned ? 0 : 1); if (unlikely(idigit >= (1L << remaining_bits))) goto raise_overflow; val |= ((long) idigit) << bits; } if (!is_unsigned) { if (unlikely(val & (((long) 1) << (sizeof(long) * 8 - 1)))) goto raise_overflow; if (is_negative) val = ~val; } ret = 0; done: Py_XDECREF(shift); Py_XDECREF(mask); Py_XDECREF(stepval); #endif if (unlikely(ret)) return (long) -1; return val; } raise_overflow: PyErr_SetString(PyExc_OverflowError, "value too large to convert to long"); return (long) -1; raise_neg_overflow: PyErr_SetString(PyExc_OverflowError, "can't convert negative value to long"); return (long) -1; } /* CIntToPy */ static CYTHON_INLINE PyObject* __Pyx_PyLong_From_long(long value) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const long neg_one = (long) -1, const_zero = (long) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(long) < sizeof(long)) { return PyLong_FromLong((long) value); } else if (sizeof(long) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); #if !CYTHON_COMPILING_IN_PYPY } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); #endif } } else { if (sizeof(long) <= sizeof(long)) { return PyLong_FromLong((long) value); } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { return PyLong_FromLongLong((PY_LONG_LONG) value); } } { unsigned char *bytes = (unsigned char *)&value; #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 if (is_unsigned) { return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); } else { return PyLong_FromNativeBytes(bytes, sizeof(value), -1); } #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 int one = 1; int little = (int)*(unsigned char *)&one; return _PyLong_FromByteArray(bytes, sizeof(long), little, !is_unsigned); #else int one = 1; int little = (int)*(unsigned char *)&one; PyObject *from_bytes, *result = NULL, *kwds = NULL; PyObject *py_bytes = NULL, *order_str = NULL; from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); if (!from_bytes) return NULL; py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(long)); if (!py_bytes) goto limited_bad; order_str = PyUnicode_FromString(little ? "little" : "big"); if (!order_str) goto limited_bad; { PyObject *args[3+(CYTHON_VECTORCALL ? 1 : 0)] = { NULL, py_bytes, order_str }; if (!is_unsigned) { kwds = __Pyx_MakeVectorcallBuilderKwds(1); if (!kwds) goto limited_bad; if (__Pyx_VectorcallBuilder_AddArgStr("signed", __Pyx_NewRef(Py_True), kwds, args+3, 0) < 0) goto limited_bad; } result = __Pyx_Object_Vectorcall_CallFromBuilder(from_bytes, args+1, 2 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET, kwds); } limited_bad: Py_XDECREF(kwds); Py_XDECREF(order_str); Py_XDECREF(py_bytes); Py_XDECREF(from_bytes); return result; #endif } } /* CIntFromPy */ static CYTHON_INLINE npy_intp __Pyx_PyLong_As_npy_intp(PyObject *x) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const npy_intp neg_one = (npy_intp) -1, const_zero = (npy_intp) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; if (unlikely(!PyLong_Check(x))) { npy_intp val; PyObject *tmp = __Pyx_PyNumber_Long(x); if (!tmp) return (npy_intp) -1; val = __Pyx_PyLong_As_npy_intp(tmp); Py_DECREF(tmp); return val; } if (is_unsigned) { #if CYTHON_USE_PYLONG_INTERNALS if (unlikely(__Pyx_PyLong_IsNeg(x))) { goto raise_neg_overflow; } else if (__Pyx_PyLong_IsCompact(x)) { __PYX_VERIFY_RETURN_INT(npy_intp, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) } else { const digit* digits = __Pyx_PyLong_Digits(x); assert(__Pyx_PyLong_DigitCount(x) > 1); switch (__Pyx_PyLong_DigitCount(x)) { case 2: if ((8 * sizeof(npy_intp) > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(npy_intp, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(npy_intp) >= 2 * PyLong_SHIFT)) { return (npy_intp) (((((npy_intp)digits[1]) << PyLong_SHIFT) | (npy_intp)digits[0])); } } break; case 3: if ((8 * sizeof(npy_intp) > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(npy_intp, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(npy_intp) >= 3 * PyLong_SHIFT)) { return (npy_intp) (((((((npy_intp)digits[2]) << PyLong_SHIFT) | (npy_intp)digits[1]) << PyLong_SHIFT) | (npy_intp)digits[0])); } } break; case 4: if ((8 * sizeof(npy_intp) > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(npy_intp, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(npy_intp) >= 4 * PyLong_SHIFT)) { return (npy_intp) (((((((((npy_intp)digits[3]) << PyLong_SHIFT) | (npy_intp)digits[2]) << PyLong_SHIFT) | (npy_intp)digits[1]) << PyLong_SHIFT) | (npy_intp)digits[0])); } } break; } } #endif #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 if (unlikely(Py_SIZE(x) < 0)) { goto raise_neg_overflow; } #else { int result = PyObject_RichCompareBool(x, Py_False, Py_LT); if (unlikely(result < 0)) return (npy_intp) -1; if (unlikely(result == 1)) goto raise_neg_overflow; } #endif if ((sizeof(npy_intp) <= sizeof(unsigned long))) { __PYX_VERIFY_RETURN_INT_EXC(npy_intp, unsigned long, PyLong_AsUnsignedLong(x)) } else if ((sizeof(npy_intp) <= sizeof(unsigned PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(npy_intp, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) } } else { #if CYTHON_USE_PYLONG_INTERNALS if (__Pyx_PyLong_IsCompact(x)) { __PYX_VERIFY_RETURN_INT(npy_intp, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) } else { const digit* digits = __Pyx_PyLong_Digits(x); assert(__Pyx_PyLong_DigitCount(x) > 1); switch (__Pyx_PyLong_SignedDigitCount(x)) { case -2: if ((8 * sizeof(npy_intp) - 1 > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(npy_intp, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(npy_intp) - 1 > 2 * PyLong_SHIFT)) { return (npy_intp) (((npy_intp)-1)*(((((npy_intp)digits[1]) << PyLong_SHIFT) | (npy_intp)digits[0]))); } } break; case 2: if ((8 * sizeof(npy_intp) > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(npy_intp, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(npy_intp) - 1 > 2 * PyLong_SHIFT)) { return (npy_intp) ((((((npy_intp)digits[1]) << PyLong_SHIFT) | (npy_intp)digits[0]))); } } break; case -3: if ((8 * sizeof(npy_intp) - 1 > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(npy_intp, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(npy_intp) - 1 > 3 * PyLong_SHIFT)) { return (npy_intp) (((npy_intp)-1)*(((((((npy_intp)digits[2]) << PyLong_SHIFT) | (npy_intp)digits[1]) << PyLong_SHIFT) | (npy_intp)digits[0]))); } } break; case 3: if ((8 * sizeof(npy_intp) > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(npy_intp, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(npy_intp) - 1 > 3 * PyLong_SHIFT)) { return (npy_intp) ((((((((npy_intp)digits[2]) << PyLong_SHIFT) | (npy_intp)digits[1]) << PyLong_SHIFT) | (npy_intp)digits[0]))); } } break; case -4: if ((8 * sizeof(npy_intp) - 1 > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(npy_intp, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(npy_intp) - 1 > 4 * PyLong_SHIFT)) { return (npy_intp) (((npy_intp)-1)*(((((((((npy_intp)digits[3]) << PyLong_SHIFT) | (npy_intp)digits[2]) << PyLong_SHIFT) | (npy_intp)digits[1]) << PyLong_SHIFT) | (npy_intp)digits[0]))); } } break; case 4: if ((8 * sizeof(npy_intp) > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(npy_intp, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(npy_intp) - 1 > 4 * PyLong_SHIFT)) { return (npy_intp) ((((((((((npy_intp)digits[3]) << PyLong_SHIFT) | (npy_intp)digits[2]) << PyLong_SHIFT) | (npy_intp)digits[1]) << PyLong_SHIFT) | (npy_intp)digits[0]))); } } break; } } #endif if ((sizeof(npy_intp) <= sizeof(long))) { __PYX_VERIFY_RETURN_INT_EXC(npy_intp, long, PyLong_AsLong(x)) } else if ((sizeof(npy_intp) <= sizeof(PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(npy_intp, PY_LONG_LONG, PyLong_AsLongLong(x)) } } { npy_intp val; int ret = -1; #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API Py_ssize_t bytes_copied = PyLong_AsNativeBytes( x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0)); if (unlikely(bytes_copied == -1)) { } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) { goto raise_overflow; } else { ret = 0; } #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; ret = _PyLong_AsByteArray((PyLongObject *)x, bytes, sizeof(val), is_little, !is_unsigned); #else PyObject *v; PyObject *stepval = NULL, *mask = NULL, *shift = NULL; int bits, remaining_bits, is_negative = 0; int chunk_size = (sizeof(long) < 8) ? 30 : 62; if (likely(PyLong_CheckExact(x))) { v = __Pyx_NewRef(x); } else { v = PyNumber_Long(x); if (unlikely(!v)) return (npy_intp) -1; assert(PyLong_CheckExact(v)); } { int result = PyObject_RichCompareBool(v, Py_False, Py_LT); if (unlikely(result < 0)) { Py_DECREF(v); return (npy_intp) -1; } is_negative = result == 1; } if (is_unsigned && unlikely(is_negative)) { Py_DECREF(v); goto raise_neg_overflow; } else if (is_negative) { stepval = PyNumber_Invert(v); Py_DECREF(v); if (unlikely(!stepval)) return (npy_intp) -1; } else { stepval = v; } v = NULL; val = (npy_intp) 0; mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; for (bits = 0; bits < (int) sizeof(npy_intp) * 8 - chunk_size; bits += chunk_size) { PyObject *tmp, *digit; long idigit; digit = PyNumber_And(stepval, mask); if (unlikely(!digit)) goto done; idigit = PyLong_AsLong(digit); Py_DECREF(digit); if (unlikely(idigit < 0)) goto done; val |= ((npy_intp) idigit) << bits; tmp = PyNumber_Rshift(stepval, shift); if (unlikely(!tmp)) goto done; Py_DECREF(stepval); stepval = tmp; } Py_DECREF(shift); shift = NULL; Py_DECREF(mask); mask = NULL; { long idigit = PyLong_AsLong(stepval); if (unlikely(idigit < 0)) goto done; remaining_bits = ((int) sizeof(npy_intp) * 8) - bits - (is_unsigned ? 0 : 1); if (unlikely(idigit >= (1L << remaining_bits))) goto raise_overflow; val |= ((npy_intp) idigit) << bits; } if (!is_unsigned) { if (unlikely(val & (((npy_intp) 1) << (sizeof(npy_intp) * 8 - 1)))) goto raise_overflow; if (is_negative) val = ~val; } ret = 0; done: Py_XDECREF(shift); Py_XDECREF(mask); Py_XDECREF(stepval); #endif if (unlikely(ret)) return (npy_intp) -1; return val; } raise_overflow: PyErr_SetString(PyExc_OverflowError, "value too large to convert to npy_intp"); return (npy_intp) -1; raise_neg_overflow: PyErr_SetString(PyExc_OverflowError, "can't convert negative value to npy_intp"); return (npy_intp) -1; } /* CIntFromPy */ static CYTHON_INLINE npy_uint8 __Pyx_PyLong_As_npy_uint8(PyObject *x) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const npy_uint8 neg_one = (npy_uint8) -1, const_zero = (npy_uint8) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; if (unlikely(!PyLong_Check(x))) { npy_uint8 val; PyObject *tmp = __Pyx_PyNumber_Long(x); if (!tmp) return (npy_uint8) -1; val = __Pyx_PyLong_As_npy_uint8(tmp); Py_DECREF(tmp); return val; } if (is_unsigned) { #if CYTHON_USE_PYLONG_INTERNALS if (unlikely(__Pyx_PyLong_IsNeg(x))) { goto raise_neg_overflow; } else if (__Pyx_PyLong_IsCompact(x)) { __PYX_VERIFY_RETURN_INT(npy_uint8, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) } else { const digit* digits = __Pyx_PyLong_Digits(x); assert(__Pyx_PyLong_DigitCount(x) > 1); switch (__Pyx_PyLong_DigitCount(x)) { case 2: if ((8 * sizeof(npy_uint8) > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(npy_uint8, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(npy_uint8) >= 2 * PyLong_SHIFT)) { return (npy_uint8) (((((npy_uint8)digits[1]) << PyLong_SHIFT) | (npy_uint8)digits[0])); } } break; case 3: if ((8 * sizeof(npy_uint8) > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(npy_uint8, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(npy_uint8) >= 3 * PyLong_SHIFT)) { return (npy_uint8) (((((((npy_uint8)digits[2]) << PyLong_SHIFT) | (npy_uint8)digits[1]) << PyLong_SHIFT) | (npy_uint8)digits[0])); } } break; case 4: if ((8 * sizeof(npy_uint8) > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(npy_uint8, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(npy_uint8) >= 4 * PyLong_SHIFT)) { return (npy_uint8) (((((((((npy_uint8)digits[3]) << PyLong_SHIFT) | (npy_uint8)digits[2]) << PyLong_SHIFT) | (npy_uint8)digits[1]) << PyLong_SHIFT) | (npy_uint8)digits[0])); } } break; } } #endif #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 if (unlikely(Py_SIZE(x) < 0)) { goto raise_neg_overflow; } #else { int result = PyObject_RichCompareBool(x, Py_False, Py_LT); if (unlikely(result < 0)) return (npy_uint8) -1; if (unlikely(result == 1)) goto raise_neg_overflow; } #endif if ((sizeof(npy_uint8) <= sizeof(unsigned long))) { __PYX_VERIFY_RETURN_INT_EXC(npy_uint8, unsigned long, PyLong_AsUnsignedLong(x)) } else if ((sizeof(npy_uint8) <= sizeof(unsigned PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(npy_uint8, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) } } else { #if CYTHON_USE_PYLONG_INTERNALS if (__Pyx_PyLong_IsCompact(x)) { __PYX_VERIFY_RETURN_INT(npy_uint8, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) } else { const digit* digits = __Pyx_PyLong_Digits(x); assert(__Pyx_PyLong_DigitCount(x) > 1); switch (__Pyx_PyLong_SignedDigitCount(x)) { case -2: if ((8 * sizeof(npy_uint8) - 1 > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(npy_uint8, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(npy_uint8) - 1 > 2 * PyLong_SHIFT)) { return (npy_uint8) (((npy_uint8)-1)*(((((npy_uint8)digits[1]) << PyLong_SHIFT) | (npy_uint8)digits[0]))); } } break; case 2: if ((8 * sizeof(npy_uint8) > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(npy_uint8, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(npy_uint8) - 1 > 2 * PyLong_SHIFT)) { return (npy_uint8) ((((((npy_uint8)digits[1]) << PyLong_SHIFT) | (npy_uint8)digits[0]))); } } break; case -3: if ((8 * sizeof(npy_uint8) - 1 > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(npy_uint8, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(npy_uint8) - 1 > 3 * PyLong_SHIFT)) { return (npy_uint8) (((npy_uint8)-1)*(((((((npy_uint8)digits[2]) << PyLong_SHIFT) | (npy_uint8)digits[1]) << PyLong_SHIFT) | (npy_uint8)digits[0]))); } } break; case 3: if ((8 * sizeof(npy_uint8) > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(npy_uint8, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(npy_uint8) - 1 > 3 * PyLong_SHIFT)) { return (npy_uint8) ((((((((npy_uint8)digits[2]) << PyLong_SHIFT) | (npy_uint8)digits[1]) << PyLong_SHIFT) | (npy_uint8)digits[0]))); } } break; case -4: if ((8 * sizeof(npy_uint8) - 1 > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(npy_uint8, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(npy_uint8) - 1 > 4 * PyLong_SHIFT)) { return (npy_uint8) (((npy_uint8)-1)*(((((((((npy_uint8)digits[3]) << PyLong_SHIFT) | (npy_uint8)digits[2]) << PyLong_SHIFT) | (npy_uint8)digits[1]) << PyLong_SHIFT) | (npy_uint8)digits[0]))); } } break; case 4: if ((8 * sizeof(npy_uint8) > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(npy_uint8, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(npy_uint8) - 1 > 4 * PyLong_SHIFT)) { return (npy_uint8) ((((((((((npy_uint8)digits[3]) << PyLong_SHIFT) | (npy_uint8)digits[2]) << PyLong_SHIFT) | (npy_uint8)digits[1]) << PyLong_SHIFT) | (npy_uint8)digits[0]))); } } break; } } #endif if ((sizeof(npy_uint8) <= sizeof(long))) { __PYX_VERIFY_RETURN_INT_EXC(npy_uint8, long, PyLong_AsLong(x)) } else if ((sizeof(npy_uint8) <= sizeof(PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(npy_uint8, PY_LONG_LONG, PyLong_AsLongLong(x)) } } { npy_uint8 val; int ret = -1; #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API Py_ssize_t bytes_copied = PyLong_AsNativeBytes( x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0)); if (unlikely(bytes_copied == -1)) { } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) { goto raise_overflow; } else { ret = 0; } #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; ret = _PyLong_AsByteArray((PyLongObject *)x, bytes, sizeof(val), is_little, !is_unsigned); #else PyObject *v; PyObject *stepval = NULL, *mask = NULL, *shift = NULL; int bits, remaining_bits, is_negative = 0; int chunk_size = (sizeof(long) < 8) ? 30 : 62; if (likely(PyLong_CheckExact(x))) { v = __Pyx_NewRef(x); } else { v = PyNumber_Long(x); if (unlikely(!v)) return (npy_uint8) -1; assert(PyLong_CheckExact(v)); } { int result = PyObject_RichCompareBool(v, Py_False, Py_LT); if (unlikely(result < 0)) { Py_DECREF(v); return (npy_uint8) -1; } is_negative = result == 1; } if (is_unsigned && unlikely(is_negative)) { Py_DECREF(v); goto raise_neg_overflow; } else if (is_negative) { stepval = PyNumber_Invert(v); Py_DECREF(v); if (unlikely(!stepval)) return (npy_uint8) -1; } else { stepval = v; } v = NULL; val = (npy_uint8) 0; mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; for (bits = 0; bits < (int) sizeof(npy_uint8) * 8 - chunk_size; bits += chunk_size) { PyObject *tmp, *digit; long idigit; digit = PyNumber_And(stepval, mask); if (unlikely(!digit)) goto done; idigit = PyLong_AsLong(digit); Py_DECREF(digit); if (unlikely(idigit < 0)) goto done; val |= ((npy_uint8) idigit) << bits; tmp = PyNumber_Rshift(stepval, shift); if (unlikely(!tmp)) goto done; Py_DECREF(stepval); stepval = tmp; } Py_DECREF(shift); shift = NULL; Py_DECREF(mask); mask = NULL; { long idigit = PyLong_AsLong(stepval); if (unlikely(idigit < 0)) goto done; remaining_bits = ((int) sizeof(npy_uint8) * 8) - bits - (is_unsigned ? 0 : 1); if (unlikely(idigit >= (1L << remaining_bits))) goto raise_overflow; val |= ((npy_uint8) idigit) << bits; } if (!is_unsigned) { if (unlikely(val & (((npy_uint8) 1) << (sizeof(npy_uint8) * 8 - 1)))) goto raise_overflow; if (is_negative) val = ~val; } ret = 0; done: Py_XDECREF(shift); Py_XDECREF(mask); Py_XDECREF(stepval); #endif if (unlikely(ret)) return (npy_uint8) -1; return val; } raise_overflow: PyErr_SetString(PyExc_OverflowError, "value too large to convert to npy_uint8"); return (npy_uint8) -1; raise_neg_overflow: PyErr_SetString(PyExc_OverflowError, "can't convert negative value to npy_uint8"); return (npy_uint8) -1; } /* CIntToPy */ static CYTHON_INLINE PyObject* __Pyx_PyLong_From_npy_intp(npy_intp value) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const npy_intp neg_one = (npy_intp) -1, const_zero = (npy_intp) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(npy_intp) < sizeof(long)) { return PyLong_FromLong((long) value); } else if (sizeof(npy_intp) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); #if !CYTHON_COMPILING_IN_PYPY } else if (sizeof(npy_intp) <= sizeof(unsigned PY_LONG_LONG)) { return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); #endif } } else { if (sizeof(npy_intp) <= sizeof(long)) { return PyLong_FromLong((long) value); } else if (sizeof(npy_intp) <= sizeof(PY_LONG_LONG)) { return PyLong_FromLongLong((PY_LONG_LONG) value); } } { unsigned char *bytes = (unsigned char *)&value; #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 if (is_unsigned) { return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); } else { return PyLong_FromNativeBytes(bytes, sizeof(value), -1); } #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 int one = 1; int little = (int)*(unsigned char *)&one; return _PyLong_FromByteArray(bytes, sizeof(npy_intp), little, !is_unsigned); #else int one = 1; int little = (int)*(unsigned char *)&one; PyObject *from_bytes, *result = NULL, *kwds = NULL; PyObject *py_bytes = NULL, *order_str = NULL; from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); if (!from_bytes) return NULL; py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(npy_intp)); if (!py_bytes) goto limited_bad; order_str = PyUnicode_FromString(little ? "little" : "big"); if (!order_str) goto limited_bad; { PyObject *args[3+(CYTHON_VECTORCALL ? 1 : 0)] = { NULL, py_bytes, order_str }; if (!is_unsigned) { kwds = __Pyx_MakeVectorcallBuilderKwds(1); if (!kwds) goto limited_bad; if (__Pyx_VectorcallBuilder_AddArgStr("signed", __Pyx_NewRef(Py_True), kwds, args+3, 0) < 0) goto limited_bad; } result = __Pyx_Object_Vectorcall_CallFromBuilder(from_bytes, args+1, 2 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET, kwds); } limited_bad: Py_XDECREF(kwds); Py_XDECREF(order_str); Py_XDECREF(py_bytes); Py_XDECREF(from_bytes); return result; #endif } } /* UpdateUnpickledDict */ static int __Pyx__UpdateUnpickledDict(PyObject *obj, PyObject *state, Py_ssize_t index) { PyObject *state_dict = __Pyx_PySequence_ITEM(state, index); if (unlikely(!state_dict)) { return -1; } int non_empty = PyObject_IsTrue(state_dict); if (non_empty == 0) { Py_DECREF(state_dict); return 0; } else if (unlikely(non_empty == -1)) { return -1; } PyObject *dict; #if CYTHON_COMPILING_IN_LIMITED_API && __PYX_LIMITED_VERSION_HEX < 0x030A0000 dict = PyObject_GetAttrString(obj, "__dict__"); #else dict = PyObject_GenericGetDict(obj, NULL); #endif if (unlikely(!dict)) { Py_DECREF(state_dict); return -1; } int result; if (likely(PyDict_CheckExact(dict))) { result = PyDict_Update(dict, state_dict); } else { PyObject *obj_result = __Pyx_PyObject_CallMethod1(dict, __pyx_mstate_global->__pyx_n_u_update, state_dict); if (likely(obj_result)) { Py_DECREF(obj_result); result = 0; } else { result = -1; } } Py_DECREF(state_dict); Py_DECREF(dict); return result; } static int __Pyx_UpdateUnpickledDict(PyObject *obj, PyObject *state, Py_ssize_t index) { Py_ssize_t state_size = __Pyx_PyTuple_GET_SIZE(state); #if !CYTHON_ASSUME_SAFE_SIZE if (unlikely(state_size == -1)) return -1; #endif if (state_size <= index) { return 0; } return __Pyx__UpdateUnpickledDict(obj, state, index); } /* FormatTypeName */ #if CYTHON_COMPILING_IN_LIMITED_API && __PYX_LIMITED_VERSION_HEX < 0x030d0000 static __Pyx_TypeName __Pyx_PyType_GetFullyQualifiedName(PyTypeObject* tp) { PyObject *module = NULL, *name = NULL, *result = NULL; #if __PYX_LIMITED_VERSION_HEX < 0x030b0000 name = __Pyx_PyObject_GetAttrStr((PyObject *)tp, __pyx_mstate_global->__pyx_n_u_qualname); #else name = PyType_GetQualName(tp); #endif if (unlikely(name == NULL) || unlikely(!PyUnicode_Check(name))) goto bad; module = __Pyx_PyObject_GetAttrStr((PyObject *)tp, __pyx_mstate_global->__pyx_n_u_module); if (unlikely(module == NULL) || unlikely(!PyUnicode_Check(module))) goto bad; if (PyUnicode_CompareWithASCIIString(module, "builtins") == 0) { result = name; name = NULL; goto done; } result = PyUnicode_FromFormat("%U.%U", module, name); if (unlikely(result == NULL)) goto bad; done: Py_XDECREF(name); Py_XDECREF(module); return result; bad: PyErr_Clear(); if (name) { result = name; name = NULL; } else { result = __Pyx_NewRef(__pyx_mstate_global->__pyx_kp_u__34); } goto done; } #endif /* FastTypeChecks */ #if CYTHON_COMPILING_IN_CPYTHON static int __Pyx_InBases(PyTypeObject *a, PyTypeObject *b) { while (a) { a = __Pyx_PyType_GetSlot(a, tp_base, PyTypeObject*); if (a == b) return 1; } return b == &PyBaseObject_Type; } static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b) { PyObject *mro; if (a == b) return 1; mro = a->tp_mro; if (likely(mro)) { Py_ssize_t i, n; n = PyTuple_GET_SIZE(mro); for (i = 0; i < n; i++) { if (PyTuple_GET_ITEM(mro, i) == (PyObject *)b) return 1; } return 0; } return __Pyx_InBases(a, b); } static CYTHON_INLINE int __Pyx_IsAnySubtype2(PyTypeObject *cls, PyTypeObject *a, PyTypeObject *b) { PyObject *mro; if (cls == a || cls == b) return 1; mro = cls->tp_mro; if (likely(mro)) { Py_ssize_t i, n; n = PyTuple_GET_SIZE(mro); for (i = 0; i < n; i++) { PyObject *base = PyTuple_GET_ITEM(mro, i); if (base == (PyObject *)a || base == (PyObject *)b) return 1; } return 0; } return __Pyx_InBases(cls, a) || __Pyx_InBases(cls, b); } static CYTHON_INLINE int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject *exc_type2) { if (exc_type1) { return __Pyx_IsAnySubtype2((PyTypeObject*)err, (PyTypeObject*)exc_type1, (PyTypeObject*)exc_type2); } else { return __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type2); } } static int __Pyx_PyErr_GivenExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) { Py_ssize_t i, n; assert(PyExceptionClass_Check(exc_type)); n = PyTuple_GET_SIZE(tuple); for (i=0; i>= 8; ++i; } __Pyx_cached_runtime_version = version; } } #endif static unsigned long __Pyx_get_runtime_version(void) { #if __PYX_LIMITED_VERSION_HEX >= 0x030b0000 return Py_Version & ~0xFFUL; #else return __Pyx_cached_runtime_version; #endif } /* CheckBinaryVersion */ static int __Pyx_check_binary_version(unsigned long ct_version, unsigned long rt_version, int allow_newer) { const unsigned long MAJOR_MINOR = 0xFFFF0000UL; if ((rt_version & MAJOR_MINOR) == (ct_version & MAJOR_MINOR)) return 0; if (likely(allow_newer && (rt_version & MAJOR_MINOR) > (ct_version & MAJOR_MINOR))) return 1; { char message[200]; PyOS_snprintf(message, sizeof(message), "compile time Python version %d.%d " "of module '%.100s' " "%s " "runtime version %d.%d", (int) (ct_version >> 24), (int) ((ct_version >> 16) & 0xFF), __Pyx_MODULE_NAME, (allow_newer) ? "was newer than" : "does not match", (int) (rt_version >> 24), (int) ((rt_version >> 16) & 0xFF) ); return PyErr_WarnEx(NULL, message, 1); } } /* NewCodeObj */ #if CYTHON_COMPILING_IN_LIMITED_API static PyObject* __Pyx__PyCode_New(int a, int p, int k, int l, int s, int f, PyObject *code, PyObject *c, PyObject* n, PyObject *v, PyObject *fv, PyObject *cell, PyObject* fn, PyObject *name, int fline, PyObject *lnos) { PyObject *exception_table = NULL; PyObject *types_module=NULL, *code_type=NULL, *result=NULL; #if __PYX_LIMITED_VERSION_HEX < 0x030b0000 PyObject *version_info; PyObject *py_minor_version = NULL; #endif long minor_version = 0; PyObject *type, *value, *traceback; PyErr_Fetch(&type, &value, &traceback); #if __PYX_LIMITED_VERSION_HEX >= 0x030b0000 minor_version = 11; #else if (!(version_info = PySys_GetObject("version_info"))) goto end; if (!(py_minor_version = PySequence_GetItem(version_info, 1))) goto end; minor_version = PyLong_AsLong(py_minor_version); Py_DECREF(py_minor_version); if (minor_version == -1 && PyErr_Occurred()) goto end; #endif if (!(types_module = PyImport_ImportModule("types"))) goto end; if (!(code_type = PyObject_GetAttrString(types_module, "CodeType"))) goto end; if (minor_version <= 7) { (void)p; result = PyObject_CallFunction(code_type, "iiiiiOOOOOOiOOO", a, k, l, s, f, code, c, n, v, fn, name, fline, lnos, fv, cell); } else if (minor_version <= 10) { result = PyObject_CallFunction(code_type, "iiiiiiOOOOOOiOOO", a,p, k, l, s, f, code, c, n, v, fn, name, fline, lnos, fv, cell); } else { if (!(exception_table = PyBytes_FromStringAndSize(NULL, 0))) goto end; result = PyObject_CallFunction(code_type, "iiiiiiOOOOOOOiOOOO", a,p, k, l, s, f, code, c, n, v, fn, name, name, fline, lnos, exception_table, fv, cell); } end: Py_XDECREF(code_type); Py_XDECREF(exception_table); Py_XDECREF(types_module); if (type) { PyErr_Restore(type, value, traceback); } return result; } #elif PY_VERSION_HEX >= 0x030B0000 static PyCodeObject* __Pyx__PyCode_New(int a, int p, int k, int l, int s, int f, PyObject *code, PyObject *c, PyObject* n, PyObject *v, PyObject *fv, PyObject *cell, PyObject* fn, PyObject *name, int fline, PyObject *lnos) { PyCodeObject *result; result = #if PY_VERSION_HEX >= 0x030C0000 PyUnstable_Code_NewWithPosOnlyArgs #else PyCode_NewWithPosOnlyArgs #endif (a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, name, fline, lnos, __pyx_mstate_global->__pyx_empty_bytes); #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030c00A1 if (likely(result)) result->_co_firsttraceable = 0; #endif return result; } #elif !CYTHON_COMPILING_IN_PYPY #define __Pyx__PyCode_New(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ PyCode_NewWithPosOnlyArgs(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) #else #define __Pyx__PyCode_New(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) #endif static PyObject* __Pyx_PyCode_New( const __Pyx_PyCode_New_function_description descr, PyObject * const *varnames, PyObject *filename, PyObject *funcname, PyObject *line_table, PyObject *tuple_dedup_map ) { PyObject *code_obj = NULL, *varnames_tuple_dedup = NULL, *code_bytes = NULL; Py_ssize_t var_count = (Py_ssize_t) descr.nlocals; PyObject *varnames_tuple = PyTuple_New(var_count); if (unlikely(!varnames_tuple)) return NULL; for (Py_ssize_t i=0; i < var_count; i++) { Py_INCREF(varnames[i]); if (__Pyx_PyTuple_SET_ITEM(varnames_tuple, i, varnames[i]) != (0)) goto done; } #if CYTHON_COMPILING_IN_LIMITED_API varnames_tuple_dedup = PyDict_GetItem(tuple_dedup_map, varnames_tuple); if (!varnames_tuple_dedup) { if (unlikely(PyDict_SetItem(tuple_dedup_map, varnames_tuple, varnames_tuple) < 0)) goto done; varnames_tuple_dedup = varnames_tuple; } #else varnames_tuple_dedup = PyDict_SetDefault(tuple_dedup_map, varnames_tuple, varnames_tuple); if (unlikely(!varnames_tuple_dedup)) goto done; #endif #if CYTHON_AVOID_BORROWED_REFS Py_INCREF(varnames_tuple_dedup); #endif if (__PYX_LIMITED_VERSION_HEX >= (0x030b0000) && line_table != NULL && !CYTHON_COMPILING_IN_GRAAL) { Py_ssize_t line_table_length = __Pyx_PyBytes_GET_SIZE(line_table); #if !CYTHON_ASSUME_SAFE_SIZE if (unlikely(line_table_length == -1)) goto done; #endif Py_ssize_t code_len = (line_table_length * 2 + 4) & ~3LL; code_bytes = PyBytes_FromStringAndSize(NULL, code_len); if (unlikely(!code_bytes)) goto done; char* c_code_bytes = PyBytes_AsString(code_bytes); if (unlikely(!c_code_bytes)) goto done; memset(c_code_bytes, 0, (size_t) code_len); } code_obj = (PyObject*) __Pyx__PyCode_New( (int) descr.argcount, (int) descr.num_posonly_args, (int) descr.num_kwonly_args, (int) descr.nlocals, 0, (int) descr.flags, code_bytes ? code_bytes : __pyx_mstate_global->__pyx_empty_bytes, __pyx_mstate_global->__pyx_empty_tuple, __pyx_mstate_global->__pyx_empty_tuple, varnames_tuple_dedup, __pyx_mstate_global->__pyx_empty_tuple, __pyx_mstate_global->__pyx_empty_tuple, filename, funcname, (int) descr.first_line, (__PYX_LIMITED_VERSION_HEX >= (0x030b0000) && line_table) ? line_table : __pyx_mstate_global->__pyx_empty_bytes ); done: Py_XDECREF(code_bytes); #if CYTHON_AVOID_BORROWED_REFS Py_XDECREF(varnames_tuple_dedup); #endif Py_DECREF(varnames_tuple); return code_obj; } /* DecompressString */ static PyObject *__Pyx_DecompressString(const char *s, Py_ssize_t length, int algo) { PyObject *module = NULL, *decompress, *compressed_bytes, *decompressed; const char* module_name = algo == 3 ? "compression.zstd" : algo == 2 ? "bz2" : "zlib"; PyObject *methodname = PyUnicode_FromString("decompress"); if (unlikely(!methodname)) return NULL; #if __PYX_LIMITED_VERSION_HEX >= 0x030e0000 if (algo == 3) { PyObject *fromlist = Py_BuildValue("[O]", methodname); if (unlikely(!fromlist)) goto bad; module = PyImport_ImportModuleLevel("compression.zstd", NULL, NULL, fromlist, 0); Py_DECREF(fromlist); } else #endif module = PyImport_ImportModule(module_name); if (unlikely(!module)) goto import_failed; decompress = PyObject_GetAttr(module, methodname); if (unlikely(!decompress)) goto import_failed; { #ifdef __cplusplus char *memview_bytes = const_cast(s); #else #if defined(__clang__) #pragma clang diagnostic push #pragma clang diagnostic ignored "-Wcast-qual" #elif !defined(__INTEL_COMPILER) && defined(__GNUC__) #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wcast-qual" #endif char *memview_bytes = (char*) s; #if defined(__clang__) #pragma clang diagnostic pop #elif !defined(__INTEL_COMPILER) && defined(__GNUC__) #pragma GCC diagnostic pop #endif #endif #if CYTHON_COMPILING_IN_LIMITED_API && !defined(PyBUF_READ) int memview_flags = 0x100; #else int memview_flags = PyBUF_READ; #endif compressed_bytes = PyMemoryView_FromMemory(memview_bytes, length, memview_flags); } if (unlikely(!compressed_bytes)) { Py_DECREF(decompress); goto bad; } decompressed = PyObject_CallFunctionObjArgs(decompress, compressed_bytes, NULL); Py_DECREF(compressed_bytes); Py_DECREF(decompress); Py_DECREF(module); Py_DECREF(methodname); return decompressed; import_failed: PyErr_Format(PyExc_ImportError, "Failed to import '%.20s.decompress' - cannot initialise module strings. " "String compression was configured with the C macro 'CYTHON_COMPRESS_STRINGS=%d'.", module_name, algo); bad: Py_XDECREF(module); Py_DECREF(methodname); return NULL; } #include static CYTHON_INLINE Py_ssize_t __Pyx_ssize_strlen(const char *s) { size_t len = strlen(s); if (unlikely(len > (size_t) PY_SSIZE_T_MAX)) { PyErr_SetString(PyExc_OverflowError, "byte string is too long"); return -1; } return (Py_ssize_t) len; } static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { Py_ssize_t len = __Pyx_ssize_strlen(c_str); if (unlikely(len < 0)) return NULL; return __Pyx_PyUnicode_FromStringAndSize(c_str, len); } static CYTHON_INLINE PyObject* __Pyx_PyByteArray_FromString(const char* c_str) { Py_ssize_t len = __Pyx_ssize_strlen(c_str); if (unlikely(len < 0)) return NULL; return PyByteArray_FromStringAndSize(c_str, len); } static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) { Py_ssize_t ignore; return __Pyx_PyObject_AsStringAndSize(o, &ignore); } #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_UTF8 static CYTHON_INLINE const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) { if (unlikely(__Pyx_PyUnicode_READY(o) == -1)) return NULL; #if CYTHON_COMPILING_IN_LIMITED_API { const char* result; Py_ssize_t unicode_length; CYTHON_MAYBE_UNUSED_VAR(unicode_length); // only for __PYX_DEFAULT_STRING_ENCODING_IS_ASCII #if __PYX_LIMITED_VERSION_HEX < 0x030A0000 if (unlikely(PyArg_Parse(o, "s#", &result, length) < 0)) return NULL; #else result = PyUnicode_AsUTF8AndSize(o, length); #endif #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII unicode_length = PyUnicode_GetLength(o); if (unlikely(unicode_length < 0)) return NULL; if (unlikely(unicode_length != *length)) { PyUnicode_AsASCIIString(o); return NULL; } #endif return result; } #else #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII if (likely(PyUnicode_IS_ASCII(o))) { *length = PyUnicode_GET_LENGTH(o); return PyUnicode_AsUTF8(o); } else { PyUnicode_AsASCIIString(o); return NULL; } #else return PyUnicode_AsUTF8AndSize(o, length); #endif #endif } #endif static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_UTF8 if (PyUnicode_Check(o)) { return __Pyx_PyUnicode_AsStringAndSize(o, length); } else #endif if (PyByteArray_Check(o)) { #if (CYTHON_ASSUME_SAFE_SIZE && CYTHON_ASSUME_SAFE_MACROS) || (CYTHON_COMPILING_IN_PYPY && (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE))) *length = PyByteArray_GET_SIZE(o); return PyByteArray_AS_STRING(o); #else *length = PyByteArray_Size(o); if (*length == -1) return NULL; return PyByteArray_AsString(o); #endif } else { char* result; int r = PyBytes_AsStringAndSize(o, &result, length); if (unlikely(r < 0)) { return NULL; } else { return result; } } } static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) { int is_true = x == Py_True; if (is_true | (x == Py_False) | (x == Py_None)) return is_true; else return PyObject_IsTrue(x); } static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject* x) { int retval; if (unlikely(!x)) return -1; retval = __Pyx_PyObject_IsTrue(x); Py_DECREF(x); return retval; } static PyObject* __Pyx_PyNumber_LongWrongResultType(PyObject* result) { __Pyx_TypeName result_type_name = __Pyx_PyType_GetFullyQualifiedName(Py_TYPE(result)); if (PyLong_Check(result)) { if (PyErr_WarnFormat(PyExc_DeprecationWarning, 1, "__int__ returned non-int (type " __Pyx_FMT_TYPENAME "). " "The ability to return an instance of a strict subclass of int is deprecated, " "and may be removed in a future version of Python.", result_type_name)) { __Pyx_DECREF_TypeName(result_type_name); Py_DECREF(result); return NULL; } __Pyx_DECREF_TypeName(result_type_name); return result; } PyErr_Format(PyExc_TypeError, "__int__ returned non-int (type " __Pyx_FMT_TYPENAME ")", result_type_name); __Pyx_DECREF_TypeName(result_type_name); Py_DECREF(result); return NULL; } static CYTHON_INLINE PyObject* __Pyx_PyNumber_Long(PyObject* x) { #if CYTHON_USE_TYPE_SLOTS PyNumberMethods *m; #endif PyObject *res = NULL; if (likely(PyLong_Check(x))) return __Pyx_NewRef(x); #if CYTHON_USE_TYPE_SLOTS m = Py_TYPE(x)->tp_as_number; if (likely(m && m->nb_int)) { res = m->nb_int(x); } #else if (!PyBytes_CheckExact(x) && !PyUnicode_CheckExact(x)) { res = PyNumber_Long(x); } #endif if (likely(res)) { if (unlikely(!PyLong_CheckExact(res))) { return __Pyx_PyNumber_LongWrongResultType(res); } } else if (!PyErr_Occurred()) { PyErr_SetString(PyExc_TypeError, "an integer is required"); } return res; } static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { Py_ssize_t ival; PyObject *x; if (likely(PyLong_CheckExact(b))) { #if CYTHON_USE_PYLONG_INTERNALS if (likely(__Pyx_PyLong_IsCompact(b))) { return __Pyx_PyLong_CompactValue(b); } else { const digit* digits = __Pyx_PyLong_Digits(b); const Py_ssize_t size = __Pyx_PyLong_SignedDigitCount(b); switch (size) { case 2: if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); } break; case -2: if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); } break; case 3: if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); } break; case -3: if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); } break; case 4: if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); } break; case -4: if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); } break; } } #endif return PyLong_AsSsize_t(b); } x = PyNumber_Index(b); if (!x) return -1; ival = PyLong_AsSsize_t(x); Py_DECREF(x); return ival; } static CYTHON_INLINE Py_hash_t __Pyx_PyIndex_AsHash_t(PyObject* o) { if (sizeof(Py_hash_t) == sizeof(Py_ssize_t)) { return (Py_hash_t) __Pyx_PyIndex_AsSsize_t(o); } else { Py_ssize_t ival; PyObject *x; x = PyNumber_Index(o); if (!x) return -1; ival = PyLong_AsLong(x); Py_DECREF(x); return ival; } } static CYTHON_INLINE PyObject *__Pyx_Owned_Py_None(int b) { CYTHON_UNUSED_VAR(b); return __Pyx_NewRef(Py_None); } static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b) { return __Pyx_NewRef(b ? Py_True: Py_False); } static CYTHON_INLINE PyObject * __Pyx_PyLong_FromSize_t(size_t ival) { return PyLong_FromSize_t(ival); } /* MultiPhaseInitModuleState */ #if CYTHON_PEP489_MULTI_PHASE_INIT && CYTHON_USE_MODULE_STATE #ifndef CYTHON_MODULE_STATE_LOOKUP_THREAD_SAFE #if (CYTHON_COMPILING_IN_LIMITED_API || PY_VERSION_HEX >= 0x030C0000) #define CYTHON_MODULE_STATE_LOOKUP_THREAD_SAFE 1 #else #define CYTHON_MODULE_STATE_LOOKUP_THREAD_SAFE 0 #endif #endif #if CYTHON_MODULE_STATE_LOOKUP_THREAD_SAFE && !CYTHON_ATOMICS #error "Module state with PEP489 requires atomics. Currently that's one of\ C11, C++11, gcc atomic intrinsics or MSVC atomic intrinsics" #endif #if !CYTHON_MODULE_STATE_LOOKUP_THREAD_SAFE #define __Pyx_ModuleStateLookup_Lock() #define __Pyx_ModuleStateLookup_Unlock() #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d0000 static PyMutex __Pyx_ModuleStateLookup_mutex = {0}; #define __Pyx_ModuleStateLookup_Lock() PyMutex_Lock(&__Pyx_ModuleStateLookup_mutex) #define __Pyx_ModuleStateLookup_Unlock() PyMutex_Unlock(&__Pyx_ModuleStateLookup_mutex) #elif defined(__cplusplus) && __cplusplus >= 201103L #include static std::mutex __Pyx_ModuleStateLookup_mutex; #define __Pyx_ModuleStateLookup_Lock() __Pyx_ModuleStateLookup_mutex.lock() #define __Pyx_ModuleStateLookup_Unlock() __Pyx_ModuleStateLookup_mutex.unlock() #elif defined(__STDC_VERSION__) && (__STDC_VERSION__ > 201112L) && !defined(__STDC_NO_THREADS__) #include static mtx_t __Pyx_ModuleStateLookup_mutex; static once_flag __Pyx_ModuleStateLookup_mutex_once_flag = ONCE_FLAG_INIT; static void __Pyx_ModuleStateLookup_initialize_mutex(void) { mtx_init(&__Pyx_ModuleStateLookup_mutex, mtx_plain); } #define __Pyx_ModuleStateLookup_Lock()\ call_once(&__Pyx_ModuleStateLookup_mutex_once_flag, __Pyx_ModuleStateLookup_initialize_mutex);\ mtx_lock(&__Pyx_ModuleStateLookup_mutex) #define __Pyx_ModuleStateLookup_Unlock() mtx_unlock(&__Pyx_ModuleStateLookup_mutex) #elif defined(HAVE_PTHREAD_H) #include static pthread_mutex_t __Pyx_ModuleStateLookup_mutex = PTHREAD_MUTEX_INITIALIZER; #define __Pyx_ModuleStateLookup_Lock() pthread_mutex_lock(&__Pyx_ModuleStateLookup_mutex) #define __Pyx_ModuleStateLookup_Unlock() pthread_mutex_unlock(&__Pyx_ModuleStateLookup_mutex) #elif defined(_WIN32) #include // synchapi.h on its own doesn't work static SRWLOCK __Pyx_ModuleStateLookup_mutex = SRWLOCK_INIT; #define __Pyx_ModuleStateLookup_Lock() AcquireSRWLockExclusive(&__Pyx_ModuleStateLookup_mutex) #define __Pyx_ModuleStateLookup_Unlock() ReleaseSRWLockExclusive(&__Pyx_ModuleStateLookup_mutex) #else #error "No suitable lock available for CYTHON_MODULE_STATE_LOOKUP_THREAD_SAFE.\ Requires C standard >= C11, or C++ standard >= C++11,\ or pthreads, or the Windows 32 API, or Python >= 3.13." #endif typedef struct { int64_t id; PyObject *module; } __Pyx_InterpreterIdAndModule; typedef struct { char interpreter_id_as_index; Py_ssize_t count; Py_ssize_t allocated; __Pyx_InterpreterIdAndModule table[1]; } __Pyx_ModuleStateLookupData; #define __PYX_MODULE_STATE_LOOKUP_SMALL_SIZE 32 #if CYTHON_MODULE_STATE_LOOKUP_THREAD_SAFE static __pyx_atomic_int_type __Pyx_ModuleStateLookup_read_counter = 0; #endif #if CYTHON_MODULE_STATE_LOOKUP_THREAD_SAFE static __pyx_atomic_ptr_type __Pyx_ModuleStateLookup_data = 0; #else static __Pyx_ModuleStateLookupData* __Pyx_ModuleStateLookup_data = NULL; #endif static __Pyx_InterpreterIdAndModule* __Pyx_State_FindModuleStateLookupTableLowerBound( __Pyx_InterpreterIdAndModule* table, Py_ssize_t count, int64_t interpreterId) { __Pyx_InterpreterIdAndModule* begin = table; __Pyx_InterpreterIdAndModule* end = begin + count; if (begin->id == interpreterId) { return begin; } while ((end - begin) > __PYX_MODULE_STATE_LOOKUP_SMALL_SIZE) { __Pyx_InterpreterIdAndModule* halfway = begin + (end - begin)/2; if (halfway->id == interpreterId) { return halfway; } if (halfway->id < interpreterId) { begin = halfway; } else { end = halfway; } } for (; begin < end; ++begin) { if (begin->id >= interpreterId) return begin; } return begin; } static PyObject *__Pyx_State_FindModule(CYTHON_UNUSED void* dummy) { int64_t interpreter_id = PyInterpreterState_GetID(__Pyx_PyInterpreterState_Get()); if (interpreter_id == -1) return NULL; #if CYTHON_MODULE_STATE_LOOKUP_THREAD_SAFE __Pyx_ModuleStateLookupData* data = (__Pyx_ModuleStateLookupData*)__pyx_atomic_pointer_load_relaxed(&__Pyx_ModuleStateLookup_data); { __pyx_atomic_incr_acq_rel(&__Pyx_ModuleStateLookup_read_counter); if (likely(data)) { __Pyx_ModuleStateLookupData* new_data = (__Pyx_ModuleStateLookupData*)__pyx_atomic_pointer_load_acquire(&__Pyx_ModuleStateLookup_data); if (likely(data == new_data)) { goto read_finished; } } __pyx_atomic_decr_acq_rel(&__Pyx_ModuleStateLookup_read_counter); __Pyx_ModuleStateLookup_Lock(); __pyx_atomic_incr_relaxed(&__Pyx_ModuleStateLookup_read_counter); data = (__Pyx_ModuleStateLookupData*)__pyx_atomic_pointer_load_relaxed(&__Pyx_ModuleStateLookup_data); __Pyx_ModuleStateLookup_Unlock(); } read_finished:; #else __Pyx_ModuleStateLookupData* data = __Pyx_ModuleStateLookup_data; #endif __Pyx_InterpreterIdAndModule* found = NULL; if (unlikely(!data)) goto end; if (data->interpreter_id_as_index) { if (interpreter_id < data->count) { found = data->table+interpreter_id; } } else { found = __Pyx_State_FindModuleStateLookupTableLowerBound( data->table, data->count, interpreter_id); } end: { PyObject *result=NULL; if (found && found->id == interpreter_id) { result = found->module; } #if CYTHON_MODULE_STATE_LOOKUP_THREAD_SAFE __pyx_atomic_decr_acq_rel(&__Pyx_ModuleStateLookup_read_counter); #endif return result; } } #if CYTHON_MODULE_STATE_LOOKUP_THREAD_SAFE static void __Pyx_ModuleStateLookup_wait_until_no_readers(void) { while (__pyx_atomic_load(&__Pyx_ModuleStateLookup_read_counter) != 0); } #else #define __Pyx_ModuleStateLookup_wait_until_no_readers() #endif static int __Pyx_State_AddModuleInterpIdAsIndex(__Pyx_ModuleStateLookupData **old_data, PyObject* module, int64_t interpreter_id) { Py_ssize_t to_allocate = (*old_data)->allocated; while (to_allocate <= interpreter_id) { if (to_allocate == 0) to_allocate = 1; else to_allocate *= 2; } __Pyx_ModuleStateLookupData *new_data = *old_data; if (to_allocate != (*old_data)->allocated) { new_data = (__Pyx_ModuleStateLookupData *)realloc( *old_data, sizeof(__Pyx_ModuleStateLookupData)+(to_allocate-1)*sizeof(__Pyx_InterpreterIdAndModule)); if (!new_data) { PyErr_NoMemory(); return -1; } for (Py_ssize_t i = new_data->allocated; i < to_allocate; ++i) { new_data->table[i].id = i; new_data->table[i].module = NULL; } new_data->allocated = to_allocate; } new_data->table[interpreter_id].module = module; if (new_data->count < interpreter_id+1) { new_data->count = interpreter_id+1; } *old_data = new_data; return 0; } static void __Pyx_State_ConvertFromInterpIdAsIndex(__Pyx_ModuleStateLookupData *data) { __Pyx_InterpreterIdAndModule *read = data->table; __Pyx_InterpreterIdAndModule *write = data->table; __Pyx_InterpreterIdAndModule *end = read + data->count; for (; readmodule) { write->id = read->id; write->module = read->module; ++write; } } data->count = write - data->table; for (; writeid = 0; write->module = NULL; } data->interpreter_id_as_index = 0; } static int __Pyx_State_AddModule(PyObject* module, CYTHON_UNUSED void* dummy) { int64_t interpreter_id = PyInterpreterState_GetID(__Pyx_PyInterpreterState_Get()); if (interpreter_id == -1) return -1; int result = 0; __Pyx_ModuleStateLookup_Lock(); #if CYTHON_MODULE_STATE_LOOKUP_THREAD_SAFE __Pyx_ModuleStateLookupData *old_data = (__Pyx_ModuleStateLookupData *) __pyx_atomic_pointer_exchange(&__Pyx_ModuleStateLookup_data, 0); #else __Pyx_ModuleStateLookupData *old_data = __Pyx_ModuleStateLookup_data; #endif __Pyx_ModuleStateLookupData *new_data = old_data; if (!new_data) { new_data = (__Pyx_ModuleStateLookupData *)calloc(1, sizeof(__Pyx_ModuleStateLookupData)); if (!new_data) { result = -1; PyErr_NoMemory(); goto end; } new_data->allocated = 1; new_data->interpreter_id_as_index = 1; } __Pyx_ModuleStateLookup_wait_until_no_readers(); if (new_data->interpreter_id_as_index) { if (interpreter_id < __PYX_MODULE_STATE_LOOKUP_SMALL_SIZE) { result = __Pyx_State_AddModuleInterpIdAsIndex(&new_data, module, interpreter_id); goto end; } __Pyx_State_ConvertFromInterpIdAsIndex(new_data); } { Py_ssize_t insert_at = 0; { __Pyx_InterpreterIdAndModule* lower_bound = __Pyx_State_FindModuleStateLookupTableLowerBound( new_data->table, new_data->count, interpreter_id); assert(lower_bound); insert_at = lower_bound - new_data->table; if (unlikely(insert_at < new_data->count && lower_bound->id == interpreter_id)) { lower_bound->module = module; goto end; // already in table, nothing more to do } } if (new_data->count+1 >= new_data->allocated) { Py_ssize_t to_allocate = (new_data->count+1)*2; new_data = (__Pyx_ModuleStateLookupData*)realloc( new_data, sizeof(__Pyx_ModuleStateLookupData) + (to_allocate-1)*sizeof(__Pyx_InterpreterIdAndModule)); if (!new_data) { result = -1; new_data = old_data; PyErr_NoMemory(); goto end; } new_data->allocated = to_allocate; } ++new_data->count; int64_t last_id = interpreter_id; PyObject *last_module = module; for (Py_ssize_t i=insert_at; icount; ++i) { int64_t current_id = new_data->table[i].id; new_data->table[i].id = last_id; last_id = current_id; PyObject *current_module = new_data->table[i].module; new_data->table[i].module = last_module; last_module = current_module; } } end: #if CYTHON_MODULE_STATE_LOOKUP_THREAD_SAFE __pyx_atomic_pointer_exchange(&__Pyx_ModuleStateLookup_data, new_data); #else __Pyx_ModuleStateLookup_data = new_data; #endif __Pyx_ModuleStateLookup_Unlock(); return result; } static int __Pyx_State_RemoveModule(CYTHON_UNUSED void* dummy) { int64_t interpreter_id = PyInterpreterState_GetID(__Pyx_PyInterpreterState_Get()); if (interpreter_id == -1) return -1; __Pyx_ModuleStateLookup_Lock(); #if CYTHON_MODULE_STATE_LOOKUP_THREAD_SAFE __Pyx_ModuleStateLookupData *data = (__Pyx_ModuleStateLookupData *) __pyx_atomic_pointer_exchange(&__Pyx_ModuleStateLookup_data, 0); #else __Pyx_ModuleStateLookupData *data = __Pyx_ModuleStateLookup_data; #endif if (data->interpreter_id_as_index) { if (interpreter_id < data->count) { data->table[interpreter_id].module = NULL; } goto done; } { __Pyx_ModuleStateLookup_wait_until_no_readers(); __Pyx_InterpreterIdAndModule* lower_bound = __Pyx_State_FindModuleStateLookupTableLowerBound( data->table, data->count, interpreter_id); if (!lower_bound) goto done; if (lower_bound->id != interpreter_id) goto done; __Pyx_InterpreterIdAndModule *end = data->table+data->count; for (;lower_boundid = (lower_bound+1)->id; lower_bound->module = (lower_bound+1)->module; } } --data->count; if (data->count == 0) { free(data); data = NULL; } done: #if CYTHON_MODULE_STATE_LOOKUP_THREAD_SAFE __pyx_atomic_pointer_exchange(&__Pyx_ModuleStateLookup_data, data); #else __Pyx_ModuleStateLookup_data = data; #endif __Pyx_ModuleStateLookup_Unlock(); return 0; } #endif /* #### Code section: utility_code_pragmas_end ### */ #ifdef _MSC_VER #pragma warning( pop ) #endif /* #### Code section: end ### */ #endif /* Py_PYTHON_H */