/* $Id: complement.h 40271 2011-05-28 02:29:18Z twu $ */
#ifndef COMPLEMENT_INCLUDED
#define COMPLEMENT_INCLUDED

/* Purine (A,G): R => T,C: Y
   Pyrmidine (C,T): Y => G,A: R
   A,T: W => T,A: W
   G,C: S => C,G: S
   A,C: M => T,G: K
   G,T: K => C,A: M
   A,T,C: H => T,A,G: D
   G,C,T: B => C,G,A: V
   G,A,C: V => C,T,G: B
   G,A,T: D => C,T,A: H
   G,A,T,C: N => C,T,A,G: N 

   Also X
*/

/* Also provides reverse of comp symbols |, >, <, ), (, ], [, =, # */
   
/*
                                 1111111111222222222233333333334444444444555555555566666666667777777777888888888899999999990000000000111111111122222222
                       01234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
                       @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ !"#$%&'()*+,-./0123456789:;<=>?@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefghijklmnopqrstuvwxyz{|}~@
*/

/* Don't translate double quotation, because it is interpreted as end of string */
/* Don't translate backslash, because it is interpreted as an escape character */
/* Both complement series account for U->T */
#define COMPLEMENT_LC "???????????????????????????????? ??#$%&')(*+,-./0123456789:;>=<??TVGHEFCDIJMLKNOPQYSAABWXRZ]?[^_`tvghefcdijmlknopqysaabwxrz}|{~?"
#define COMPLEMENT_UC "???????????????????????????????? ??#$%&')(*+,-./0123456789:;>=<??TVGHEFCDIJMLKNOPQYSAABWXRZ]?[^_`TVGHEFCDIJMLKNOPQYSAABWXRZ}|{~?"

#define NO_UPPERCASE  "???????????????????????????????? ??#$%&'()*+,-./0123456789:;<=>??ABCDEFGHIJKLMNOPQRSTUVWXYZ[?]^_`abcdefghijklmnopqrstuvwxyz{|}~?"
#define UPPERCASE_STD "???????????????????????????????? ??#$%&'()*+,-./0123456789:;<=>??ABCDEFGHIJKLMNOPQRSTUVWXYZ[?]^_`ABCDEFGHIJKLMNOPQRSTUVWXYZ{|}~?"
#define UPPERCASE_U2T "???????????????????????????????? ??#$%&'()*+,-./0123456789:;<=>??ABCDEFGHIJKLMNOPQRSTTVWXYZ[?]^_`ABCDEFGHIJKLMNOPQRSTTVWXYZ{|}~?"

#endif