# genomelake
Efficient random access to genomic data.

Supports the following types of input data:

- bigwig
- DNA sequence
- v-plots

genomelake extracts signal from genomic inputs in provided BED intervals.


## Requirements
- python 2.7 or 3.5
- bcolz
- cython
- numpy
- pybedtools
- pysam

The installer will check (and install) dependencies except cython and pyBigWig.

## Installation
1. Install cython with Anaconda by running:

`conda install cython`

2. Install pyBigWig with pip by running:

`pip install pyBigWig`

3. Clone the repository and then do:

`python setup.py install`

## License
genomedatalayer is released under the BSD-3 license. See ``LICENSE`` for details.