/*  Copyright 2018 Oxford Nanopore Technologies, Ltd */

/*  This Source Code Form is subject to the terms of the Oxford Nanopore
 *  Technologies, Ltd. Public License, v. 1.0. If a copy of the License 
 *  was not  distributed with this file, You can obtain one at
 *  http://nanoporetech.com
 */

#pragma once
#ifndef FLAPPIE_COMMON_H
#define FLAPPIE_COMMON_H

#include "flappie_structures.h"

raw_table trim_and_segment_raw(raw_table rt, size_t trim_start, size_t trim_end, size_t varseg_chunk, float varseg_thresh);
raw_table trim_raw_by_mad(raw_table rt, size_t chunk_size, float proportion);

#endif /* FLAPPIE_COMMON_H */