/*  Copyright 2018 Oxford Nanopore Technologies, Ltd */

/*  This Source Code Form is subject to the terms of the Oxford Nanopore
 *  Technologies, Ltd. Public License, v. 1.0. If a copy of the License 
 *  was not  distributed with this file, You can obtain one at
 *  http://nanoporetech.com
 */

#pragma once
#ifndef FAST5_INTERFACE_H
#define FAST5_INTERFACE_H

#include <hdf5.h>
#include <stdbool.h>

#include "flappie_structures.h"

raw_table read_raw(const char *filename, bool scale_to_pA);
hid_t open_or_create_hdf5(const char * filename);

void write_summary(hid_t hdf5file, const char *readname,
                   const struct _raw_basecall_info res, 
                   hsize_t chunk_size, int compression_level);


#endif /* FAST5_INTERFACE_H */