#
# Add the following sections to your Galaxy server's tool_conf.xml file.
#
  <section name="Text Manipulation" id="text manipulation">
    <tool file="fastx_toolkit/seqid_uncollapser.xml" />
  </section>

  <section name="FASTA/Q Information" id="cshl_library_information">
    <tool file="fastx_toolkit/fastx_quality_statistics.xml" />
    <tool file="fastx_toolkit/fastq_quality_boxplot.xml" />
    <tool file="fastx_toolkit/fastx_nucleotides_distribution.xml" />
    <tool file="fastx_toolkit/fasta_clipping_histogram.xml" />
  </section>

  <section name="FASTA/Q Preprocessing" id="cshl_fastx_manipulation">
    <tool file="fastx_toolkit/fastq_to_fasta.xml" />
    <tool file="fastx_toolkit/fastq_quality_converter.xml" />
    <tool file="fastx_toolkit/fastx_clipper.xml" />
    <tool file="fastx_toolkit/fastx_trimmer.xml" />
    <tool file="fastx_toolkit/fastx_trimmer_from_end.xml" />
    <tool file="fastx_toolkit/fastq_quality_trimmer.xml" />
    <tool file="fastx_toolkit/fastx_renamer.xml" />
    <tool file="fastx_toolkit/fastx_reverse_complement.xml" />
    <tool file="fastx_toolkit/fasta_formatter.xml" />
    <tool file="fastx_toolkit/fasta_nucleotide_changer.xml" />
    <tool file="fastx_toolkit/fastx_artifacts_filter.xml" />
    <tool file="fastx_toolkit/fastq_quality_filter.xml" />
    <tool file="fastx_toolkit/fastq_masker.xml" />
    <tool file="fastx_toolkit/fastx_collapser.xml" />
    <tool file="fastx_toolkit/fastx_uncollapser.xml" />
    <tool file="fastx_toolkit/fastx_barcode_splitter.xml" />
  </section>