# mutation rate: theta = 4*N*mu*1.443, where N=10,000 and mu=1.25e-8 for humans
0.0007215

# stochastic mutation matrix (A,C,G,T)
0.503, 0.082, 0.315, 0.100 | 0.186, 0.002, 0.158, 0.655 | 0.654, 0.158, 0, 0.189 | 0.097, 0.303, 0.085, 0.515

# recombination rate: rho = 4*N*r, where N=10,000 and r=1.25e-8 for humans
0.0005