# Karyotype band colors for ideograms

gpos100 = 0,0,0
gpos    = 0,0,0
gpos75  = 130,130,130
gpos66  = 160,160,160
gpos50  = 200,200,200
gpos33  = 210,210,210
gpos25  = 200,200,200
gvar    = 220,220,220
gneg    = 255,255,255
acen    = 217,47,39
stalk   = 100,127,164

#
# Default UCSC color scheme for chromosome colors. 
#
# For luminance corrected colors, see below.
#
chr1 = 153,102,0
chr2 = 102,102,0
chr3 = 153,153,30
chr4 = 204,0,0
chr5 = 255,0,0
chr6 = 255,0,204
chr7 = 255,204,204
chr8 = 255,153,0
chr9 = 255,204,0
chr10 = 255,255,0
chr11 = 204,255,0
chr12 = 0,255,0
chr13 = 53,128,0
chr14 = 0,0,204
chr15 = 102,153,255
chr16 = 153,204,255
chr17 = 0,255,255
chr18 = 204,255,255
chr19 = 153,0,204
chr20 = 204,51,255
chr21 = 204,153,255
chr22 = 102,102,102
chr23 = 153,153,153
chrX  = 153,153,153
chr24 = 204,204,204
chrY = 204,204,204
chrM = 204,204,153
chr0 = 204,204,153
chrUn = 121,204,61
chrNA = 255,255,255

# chromosome list
chrs  = chr([1-9][0-9]?)
chrs-rev  = rev(chr([1-9][0-9]?))

#
# Luminance-corrected chromosome palettes
#
# lum 70 - 70% luminance
# lum 80 - 80% luminance
# lum 90 - 90% luminance
#
lum70chr1 = 216,161,97
lum70chr2 = 175,175,108
lum70chr3 = 176,176,69
lum70chr4 = 255,108,108
lum70chr5 = 255,84,84
lum70chr6 = 255,83,237
lum70chr7 = 209,159,159
lum70chr8 = 248,147,0
lum70chr9 = 214,165,0
lum70chr10 = 179,179,0
lum70chr11 = 140,188,0
lum70chr12 = 0,204,0
lum70chr13 = 118,188,96
lum70chr14 = 158,158,255
lum70chr15 = 121,169,255
lum70chr16 = 123,176,226
lum70chr17 = 0,196,196
lum70chr18 = 128,181,181
lum70chr19 = 223,132,255
lum70chr20 = 242,114,255
lum70chr21 = 200,149,251
lum70chr22 = 102,102,102
lum70chr23 = 153,153,153
lum70chrX  = 153,153,153
lum70chr24 = 204,204,204
lum70chrY  = 204,204,204
lum70chrM  = 174,174,122
lum70chr0  = 174,174,122
lum70chrUn = 108,191,38
lum70chrNA = 171,171,171
lum80chr1 = 244,188,127
lum80chr2 = 202,202,136
lum80chr3 = 203,203,103
lum80chr4 = 255,137,137
lum80chr5 = 255,116,116
lum80chr6 = 255,119,255
lum80chr7 = 237,186,186
lum80chr8 = 255,174,62
lum80chr9 = 243,192,0
lum80chr10 = 206,206,0
lum80chr11 = 166,216,0
lum80chr12 = 0,232,0
lum80chr13 = 146,216,126
lum80chr14 = 186,186,255
lum80chr15 = 152,196,255
lum80chr16 = 152,203,254
lum80chr17 = 0,224,224
lum80chr18 = 156,208,208
lum80chr19 = 250,161,255
lum80chr20 = 255,146,255
lum80chr21 = 227,177,255
lum80chr22 = 198,198,198
lum80chr23 = 153,153,153
lum80chrX  = 153,153,153
lum80chr24 = 204,204,204
lum80chrY  = 204,204,204
lum80chrM  = 174,174,122
lum80chr0  = 174,174,122
lum80chrUn = 108,191,38
lum80chrNA = 171,171,171
lum90chr1 = 255,216,156
lum90chr2 = 230,230,165
lum90chr3 = 232,232,135
lum90chr4 = 255,166,166
lum90chr5 = 255,147,147
lum90chr6 = 255,152,255
lum90chr7 = 255,214,214
lum90chr8 = 255,202,102
lum90chr9 = 255,220,58
lum90chr10 = 234,234,0
lum90chr11 = 194,245,0
lum90chr12 = 34,255,34
lum90chr13 = 174,244,155
lum90chr14 = 215,215,255
lum90chr15 = 182,224,255
lum90chr16 = 182,231,255
lum90chr17 = 0,252,252
lum90chr18 = 185,236,236
lum90chr19 = 255,191,255
lum90chr20 = 255,177,255
lum90chr21 = 255,206,255
lum90chr22 = 198,198,198
lum90chr23 = 153,153,153
lum90chrX  = 153,153,153
lum90chr24 = 204,204,204
lum90chrY  = 204,204,204
lum90chrM  = 174,174,122
lum90chr0  = 174,174,122
lum90chrUn = 108,191,38
lum90chrNA = 171,171,171
